Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 120.00788 * 2 1 4 4 C 1.38226 * 120.02532 * 180.27942 * 3 2 1 5 5 C 1.38265 * 120.04947 * 359.44039 * 4 3 2 6 6 C 1.50704 * 119.99039 * 180.30133 * 5 4 3 7 7 N 1.46895 * 109.46851 * 90.00145 * 6 5 4 8 8 C 1.46905 * 110.99900 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47379 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47108 * 295.00382 * 9 8 7 11 11 C 1.52998 * 109.47294 * 174.99924 * 9 8 7 12 12 N 1.46507 * 109.47002 * 54.99849 * 9 8 7 13 13 C 1.34769 * 119.99981 * 204.99737 * 12 9 8 14 14 O 1.21285 * 120.00040 * 0.02562 * 13 12 9 15 15 C 1.50701 * 120.00037 * 180.02562 * 13 12 9 16 16 S 1.80997 * 109.47328 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00075 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99908 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00060 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99823 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47392 * 59.99591 * 21 19 17 23 23 H 1.48502 * 109.47283 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47240 * 299.99723 * 21 19 17 25 25 C 1.38183 * 120.02475 * 0.28283 * 5 4 3 26 26 C 1.38431 * 120.01798 * 179.72477 * 2 1 3 27 27 F 1.35104 * 120.02518 * 359.97223 * 26 2 1 28 28 H 1.08995 * 109.46802 * 270.27158 * 1 2 3 29 29 H 1.08993 * 109.47375 * 30.27666 * 1 2 3 30 30 H 1.09000 * 109.46629 * 150.27856 * 1 2 3 31 31 H 1.08000 * 119.99099 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.97943 * 179.72632 * 4 3 2 33 33 H 1.08995 * 109.47182 * 210.00513 * 6 5 4 34 34 H 1.08997 * 109.46605 * 330.00375 * 6 5 4 35 35 H 1.00900 * 111.00295 * 303.95593 * 7 6 5 36 36 H 1.08999 * 109.47150 * 300.00442 * 8 7 6 37 37 H 1.09000 * 109.46933 * 59.99916 * 8 7 6 38 38 H 1.09003 * 109.46807 * 60.00111 * 11 9 8 39 39 H 1.08998 * 109.47100 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47072 * 300.00019 * 11 9 8 41 41 H 0.97001 * 119.99598 * 25.00544 * 12 9 8 42 42 H 1.09007 * 109.46979 * 300.00353 * 15 13 12 43 43 H 1.09000 * 109.47073 * 60.00173 * 15 13 12 44 44 H 0.96996 * 119.99914 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.00879 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1974 -0.0058 5 6 4.2733 0.0008 0.0000 6 6 5.7803 0.0029 0.0005 7 7 6.2695 0.0100 1.3856 8 6 7.7380 0.0128 1.4253 9 6 8.2088 0.0209 2.8810 10 1 7.9057 0.9540 3.3558 11 6 9.7333 -0.1020 2.9247 12 7 7.6073 -1.1081 3.5951 13 6 7.4446 -1.0505 4.9317 14 8 7.7957 -0.0638 5.5433 15 6 6.8263 -2.2120 5.6663 16 16 6.7444 -1.8331 7.4343 17 6 6.0039 -3.3164 8.0311 18 1 5.7504 -4.1085 7.3421 19 6 5.7456 -3.4665 9.3866 20 7 6.0542 -2.5009 10.2262 21 14 4.9600 -5.0387 10.0192 22 1 5.8317 -6.1949 9.6900 23 1 4.7914 -4.9500 11.4920 24 1 3.6327 -5.2213 9.3788 25 6 3.5843 -1.1970 0.0058 26 6 2.1996 -1.1986 0.0058 27 9 1.5249 -2.3691 0.0119 28 1 -0.3633 0.0049 1.0276 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6583 2.1322 0.0004 32 1 4.1199 2.1330 -0.0103 33 1 6.1451 -0.8889 -0.5091 34 1 6.1425 0.8909 -0.5173 35 1 5.8927 0.7932 1.8982 36 1 8.1167 -0.8787 0.9255 37 1 8.1134 0.9012 0.9175 38 1 10.1808 0.7381 2.3934 39 1 10.0686 -0.0967 3.9618 40 1 10.0363 -1.0352 2.4500 41 1 7.3263 -1.8972 3.1058 42 1 5.8202 -2.3885 5.2858 43 1 7.4342 -3.1037 5.5133 44 1 5.8734 -2.6056 11.1734 45 1 4.1257 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699393798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -71.047751 kcal Electronic energy + Delta-G solvation = -25968.532122 eV Core-core repulsion = 22025.948473 eV Total energy + Delta-G solvation = -3942.583649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.10368 -39.74714 -39.25964 -37.01697 -34.88198 -32.91126 -32.37857 -31.22486 -30.85737 -28.67202 -28.33905 -25.69965 -25.41895 -23.63198 -23.18587 -21.62377 -21.16680 -20.16051 -17.82501 -17.40318 -17.04563 -16.47402 -16.23759 -15.95723 -15.93505 -15.32285 -15.06713 -14.75942 -14.66793 -14.40476 -14.16095 -13.95339 -13.70093 -13.50226 -13.25570 -13.10434 -12.92331 -12.73432 -12.54201 -12.32401 -12.18288 -12.11594 -11.92995 -11.83139 -11.60167 -11.23318 -10.99934 -10.99375 -10.92893 -10.71759 -9.76601 -9.28116 -9.19208 -9.01283 -8.94365 -8.75252 -8.68334 -8.17288 -6.43577 -6.16701 -3.86364 0.79725 0.91324 3.11276 3.17034 3.23011 3.27317 3.31121 3.36765 3.79128 3.90348 4.02194 4.25873 4.30440 4.39605 4.55264 4.62025 4.73594 4.90151 4.96469 5.08098 5.16242 5.18291 5.23191 5.25063 5.25844 5.26791 5.35484 5.43384 5.45602 5.60205 5.67916 5.75274 5.77177 5.83950 5.99282 6.01745 6.03205 6.14045 6.16590 6.24976 6.55970 6.62551 6.80894 7.01885 7.64459 7.90141 8.40288 8.76384 9.28602 10.90728 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008371 B = 0.002683 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3344.027923 B =10435.371144 C =12976.311127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.061 4.061 6 C 0.100 3.900 7 N -0.681 5.681 8 C 0.051 3.949 9 C 0.146 3.854 10 H 0.085 0.915 11 C -0.163 4.163 12 N -0.720 5.720 13 C 0.534 3.466 14 O -0.525 6.525 15 C -0.152 4.152 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.869 5.869 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.125 4.125 26 C 0.095 3.905 27 F -0.138 7.138 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.348 0.652 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.401 0.599 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.268 0.732 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 6.852 -27.522 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C -0.111 4.111 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.029 4.029 7 N -0.312 5.312 8 C -0.078 4.078 9 C 0.040 3.960 10 H 0.103 0.897 11 C -0.222 4.222 12 N -0.374 5.374 13 C 0.320 3.680 14 O -0.400 6.400 15 C -0.303 4.303 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.145 4.145 26 C 0.076 3.924 27 F -0.116 7.116 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.235 0.765 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.890 7.841 -26.244 27.542 hybrid contribution -0.980 -1.869 -0.767 2.246 sum -3.870 5.972 -27.011 27.933 Atomic orbital electron populations 1.20743 0.90188 1.03211 1.03071 1.19978 0.97112 0.92053 1.02859 1.20882 0.94000 0.97030 0.99209 1.21092 0.94198 0.97740 1.00838 1.19555 0.95373 0.92279 0.98963 1.20868 0.89985 1.01647 0.90387 1.60429 1.07520 1.50932 1.12354 1.22318 0.87675 1.01497 0.96326 1.20828 0.92762 0.91674 0.90725 0.89738 1.22157 0.95081 1.01641 1.03296 1.45850 1.64442 1.19893 1.07174 1.20246 0.77668 0.88481 0.81593 1.90684 1.49277 1.33134 1.66861 1.23515 1.03061 0.99004 1.04684 1.85340 1.80965 1.25191 0.91995 1.22841 1.46866 1.03073 0.95494 0.91030 1.24982 0.95423 0.97444 0.95724 1.70009 1.44974 1.31956 1.03472 0.86240 0.79622 0.82071 0.77669 1.19961 1.20847 1.19934 1.21002 0.91910 0.99558 1.02013 1.17548 0.90065 0.80989 1.03769 1.91493 1.80332 1.45943 1.93881 0.90562 0.90991 0.91209 0.85056 0.85580 0.89870 0.93983 0.83374 0.90289 0.93783 0.92053 0.91335 0.92475 0.76531 0.89279 0.89469 0.92197 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.83 36.01 0.35 -0.49 16 2 C -0.12 -1.09 5.89 -104.56 -0.62 -1.70 16 3 C -0.09 -0.73 9.70 -39.59 -0.38 -1.11 16 4 C -0.12 -0.92 9.70 -39.58 -0.38 -1.30 16 5 C -0.06 -0.51 5.39 -104.63 -0.56 -1.07 16 6 C 0.10 0.69 5.81 -4.98 -0.03 0.66 16 7 N -0.68 -5.71 6.22 -115.06 -0.72 -6.43 16 8 C 0.05 0.39 5.24 -3.82 -0.02 0.37 16 9 C 0.15 1.60 2.81 -67.93 -0.19 1.41 16 10 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 11 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 12 N -0.72 -9.63 4.80 -53.81 -0.26 -9.89 16 13 C 0.53 10.05 7.81 -10.99 -0.09 9.96 16 14 O -0.52 -11.88 15.52 5.55 0.09 -11.80 16 15 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 16 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 17 C -0.53 -15.53 9.50 30.94 0.29 -15.23 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 21 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.13 -1.20 9.68 -39.51 -0.38 -1.59 16 26 C 0.10 1.00 7.24 -39.42 -0.29 0.72 16 27 F -0.14 -1.60 16.48 2.25 0.04 -1.57 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.51 7.64 -51.93 -0.40 0.12 16 31 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 35 H 0.35 3.18 8.72 -39.29 -0.34 2.84 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.40 4.59 8.60 -40.82 -0.35 4.24 16 42 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -34.81 399.66 -10.08 -44.89 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.94 Total: 3.36 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.82 Total: -11.60 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.24 Total: -42.15 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.81 -10.08 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699393798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.160 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds