Wall clock time and date at job start Sat Apr 11 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 120.00788 * 2 1 4 4 C 1.38226 * 120.02532 * 180.27942 * 3 2 1 5 5 C 1.38265 * 120.04947 * 359.44039 * 4 3 2 6 6 C 1.50704 * 119.99039 * 180.30133 * 5 4 3 7 7 N 1.46895 * 109.46851 * 90.00145 * 6 5 4 8 8 C 1.46905 * 110.99900 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47379 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.47108 * 295.00382 * 9 8 7 11 11 C 1.52998 * 109.47294 * 174.99924 * 9 8 7 12 12 N 1.46507 * 109.47002 * 54.99849 * 9 8 7 13 13 C 1.34769 * 119.99981 * 204.99737 * 12 9 8 14 14 O 1.21285 * 120.00040 * 0.02562 * 13 12 9 15 15 C 1.50701 * 120.00037 * 180.02562 * 13 12 9 16 16 S 1.80997 * 109.47328 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00075 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99908 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00060 * 180.02562 * 17 16 15 20 20 N 1.31627 * 119.99823 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47392 * 59.99591 * 21 19 17 23 23 H 1.48502 * 109.47283 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47240 * 299.99723 * 21 19 17 25 25 C 1.38183 * 120.02475 * 0.28283 * 5 4 3 26 26 C 1.38431 * 120.01798 * 179.72477 * 2 1 3 27 27 F 1.35104 * 120.02518 * 359.97223 * 26 2 1 28 28 H 1.08995 * 109.46802 * 270.27158 * 1 2 3 29 29 H 1.08993 * 109.47375 * 30.27666 * 1 2 3 30 30 H 1.09000 * 109.46629 * 150.27856 * 1 2 3 31 31 H 1.08000 * 119.99099 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.97943 * 179.72632 * 4 3 2 33 33 H 1.08995 * 109.47182 * 210.00513 * 6 5 4 34 34 H 1.08997 * 109.46605 * 330.00375 * 6 5 4 35 35 H 1.00900 * 111.00295 * 303.95593 * 7 6 5 36 36 H 1.08999 * 109.47150 * 300.00442 * 8 7 6 37 37 H 1.09000 * 109.46933 * 59.99916 * 8 7 6 38 38 H 1.09003 * 109.46807 * 60.00111 * 11 9 8 39 39 H 1.08998 * 109.47100 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47072 * 300.00019 * 11 9 8 41 41 H 0.97001 * 119.99598 * 25.00544 * 12 9 8 42 42 H 1.09007 * 109.46979 * 300.00353 * 15 13 12 43 43 H 1.09000 * 109.47073 * 60.00173 * 15 13 12 44 44 H 0.96996 * 119.99914 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.00879 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1974 -0.0058 5 6 4.2733 0.0008 0.0000 6 6 5.7803 0.0029 0.0005 7 7 6.2695 0.0100 1.3856 8 6 7.7380 0.0128 1.4253 9 6 8.2088 0.0209 2.8810 10 1 7.9057 0.9540 3.3558 11 6 9.7333 -0.1020 2.9247 12 7 7.6073 -1.1081 3.5951 13 6 7.4446 -1.0505 4.9317 14 8 7.7957 -0.0638 5.5433 15 6 6.8263 -2.2120 5.6663 16 16 6.7444 -1.8331 7.4343 17 6 6.0039 -3.3164 8.0311 18 1 5.7504 -4.1085 7.3421 19 6 5.7456 -3.4665 9.3866 20 7 6.0542 -2.5009 10.2262 21 14 4.9600 -5.0387 10.0192 22 1 5.8317 -6.1949 9.6900 23 1 4.7914 -4.9500 11.4920 24 1 3.6327 -5.2213 9.3788 25 6 3.5843 -1.1970 0.0058 26 6 2.1996 -1.1986 0.0058 27 9 1.5249 -2.3691 0.0119 28 1 -0.3633 0.0049 1.0276 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3632 -0.8925 -0.5095 31 1 1.6583 2.1322 0.0004 32 1 4.1199 2.1330 -0.0103 33 1 6.1451 -0.8889 -0.5091 34 1 6.1425 0.8909 -0.5173 35 1 5.8927 0.7932 1.8982 36 1 8.1167 -0.8787 0.9255 37 1 8.1134 0.9012 0.9175 38 1 10.1808 0.7381 2.3934 39 1 10.0686 -0.0967 3.9618 40 1 10.0363 -1.0352 2.4500 41 1 7.3263 -1.8972 3.1058 42 1 5.8202 -2.3885 5.2858 43 1 7.4342 -3.1037 5.5133 44 1 5.8734 -2.6056 11.1734 45 1 4.1257 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699393798.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:35 Heat of formation + Delta-G solvation = -94.323788 kcal Electronic energy + Delta-G solvation = -25969.541446 eV Core-core repulsion = 22025.948473 eV Total energy + Delta-G solvation = -3943.592974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.90479 -40.71754 -40.26327 -37.91151 -35.79405 -34.58200 -33.71204 -32.38093 -31.49243 -29.96345 -29.15395 -27.64913 -26.36371 -24.26459 -23.82470 -22.58549 -21.88153 -21.44213 -19.82140 -18.19471 -17.88001 -17.70056 -17.28423 -16.87596 -16.72128 -16.63226 -16.38872 -16.13677 -15.81949 -15.63016 -15.05264 -14.81795 -14.62429 -14.54054 -14.32249 -14.21310 -13.97628 -13.80642 -13.46300 -13.24112 -13.16449 -13.00259 -12.89813 -12.86367 -12.74153 -12.60829 -12.55083 -12.36636 -11.92725 -11.76313 -11.67946 -11.12759 -10.84519 -10.26950 -9.98606 -9.83353 -9.58878 -9.29513 -8.65082 -8.34164 -6.11698 0.14924 0.26180 1.28361 1.43457 1.47171 1.58231 1.72019 2.27609 2.39620 2.53554 2.99536 3.23477 3.32367 3.37546 3.70541 3.78823 3.87143 3.98047 4.08743 4.17884 4.21006 4.30994 4.33935 4.43018 4.53648 4.57076 4.60801 4.66761 4.69937 4.70759 4.78986 4.81070 4.88344 5.07132 5.10437 5.18964 5.22180 5.31029 5.40303 5.41644 5.52271 5.63967 5.94860 6.04960 6.19973 6.35364 6.65071 7.06885 7.37472 8.74897 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008371 B = 0.002683 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3344.027923 B =10435.371144 C =12976.311127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.097 4.097 4 C -0.119 4.119 5 C -0.066 4.066 6 C 0.105 3.895 7 N -0.695 5.695 8 C 0.064 3.936 9 C 0.143 3.857 10 H 0.062 0.938 11 C -0.158 4.158 12 N -0.694 5.694 13 C 0.536 3.464 14 O -0.570 6.570 15 C -0.129 4.129 16 S -0.149 6.149 17 C -0.548 4.548 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.263 1.263 25 C -0.138 4.138 26 C 0.064 3.936 27 F -0.152 7.152 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.342 0.658 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.414 0.586 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.271 0.729 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 6.487 -29.867 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.115 4.115 4 C -0.138 4.138 5 C -0.066 4.066 6 C -0.023 4.023 7 N -0.327 5.327 8 C -0.066 4.066 9 C 0.038 3.962 10 H 0.081 0.919 11 C -0.217 4.217 12 N -0.347 5.347 13 C 0.321 3.679 14 O -0.449 6.449 15 C -0.280 4.280 16 S 0.079 5.921 17 C -0.696 4.696 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.157 4.157 26 C 0.045 3.955 27 F -0.131 7.131 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.825 7.459 -28.659 29.748 hybrid contribution -0.960 -1.679 -0.174 1.942 sum -3.785 5.779 -28.834 29.650 Atomic orbital electron populations 1.20780 0.89297 1.03954 1.03163 1.20271 0.98067 0.92110 1.02746 1.21223 0.94435 0.97425 0.98394 1.21434 0.94338 0.98477 0.99514 1.19771 0.96317 0.91987 0.98545 1.20870 0.88828 1.02929 0.89639 1.60424 1.07914 1.50948 1.13389 1.22230 0.87370 1.03404 0.93553 1.21049 0.93261 0.89468 0.92408 0.91944 1.22103 0.94348 1.03704 1.01508 1.45653 1.62696 1.21076 1.05227 1.19921 0.77596 0.87190 0.83186 1.90673 1.51533 1.34477 1.68183 1.23362 1.04504 1.00592 0.99573 1.85485 1.81370 1.26650 0.98638 1.23175 1.47012 1.03174 0.96247 0.90203 1.26115 0.95740 1.01360 0.95862 1.70173 1.46220 1.34445 1.03890 0.85025 0.78843 0.77163 0.77099 1.18637 1.20207 1.18797 1.21154 0.91718 1.00363 1.02488 1.17913 0.90774 0.81116 1.05702 1.91445 1.80672 1.46780 1.94230 0.90741 0.88925 0.91808 0.82744 0.83287 0.89112 0.92045 0.84001 0.88630 0.91444 0.89506 0.94947 0.90817 0.74968 0.87999 0.87712 0.91971 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.83 71.24 0.70 -0.92 16 2 C -0.13 -2.31 5.89 -19.82 -0.12 -2.43 16 3 C -0.10 -1.34 9.70 22.26 0.22 -1.13 16 4 C -0.12 -1.54 9.70 22.27 0.22 -1.33 16 5 C -0.07 -0.97 5.39 -19.87 -0.11 -1.07 16 6 C 0.11 1.13 5.81 85.56 0.50 1.62 16 7 N -0.70 -9.76 6.22 -517.94 -3.22 -12.98 16 8 C 0.06 0.75 5.24 86.30 0.45 1.20 16 9 C 0.14 2.88 2.81 44.99 0.13 3.00 16 10 H 0.06 1.58 7.58 -2.39 -0.02 1.57 16 11 C -0.16 -2.96 9.48 71.98 0.68 -2.28 16 12 N -0.69 -17.53 4.80 -442.54 -2.12 -19.65 16 13 C 0.54 20.13 7.81 87.66 0.68 20.82 16 14 O -0.57 -26.56 15.52 -3.05 -0.05 -26.61 16 15 C -0.13 -5.35 6.16 71.24 0.44 -4.91 16 16 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 17 C -0.55 -32.17 9.50 67.96 0.65 -31.52 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.81 5.49 84.86 0.47 1.28 16 20 N -0.91 -56.87 13.22 21.65 0.29 -56.59 16 21 Si 1.00 44.54 29.55 68.60 2.03 46.57 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.14 -2.57 9.68 22.31 0.22 -2.35 16 26 C 0.06 1.36 7.24 22.37 0.16 1.52 16 27 F -0.15 -3.69 16.48 44.97 0.74 -2.95 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.06 0.95 7.64 -2.39 -0.02 0.93 16 31 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.06 0.45 8.08 -2.39 -0.02 0.43 16 35 H 0.34 5.51 8.72 -89.69 -0.78 4.73 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.41 8.45 8.60 -92.71 -0.80 7.65 16 42 H 0.10 3.95 8.14 -2.39 -0.02 3.93 16 43 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -79.14 399.66 1.21 -77.93 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.57 Total: 22.38 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 5.28 Total: -18.48 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -5.06 Total: -89.22 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.74 Total: -2.95 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -79.14 1.21 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699393798.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.395 kcal (2) G-P(sol) polarization free energy of solvation -79.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds