Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 119.98721 * 2 1 4 4 C 1.38434 * 119.96871 * 180.29460 * 3 2 1 5 5 F 1.35108 * 120.01830 * 179.70826 * 4 3 2 6 6 C 1.38474 * 119.95273 * 359.73689 * 4 3 2 7 7 C 1.38176 * 119.97711 * 359.97438 * 6 4 3 8 8 C 1.38223 * 119.98724 * 179.75893 * 2 1 3 9 9 C 1.50699 * 119.97452 * 359.97162 * 8 2 1 10 10 N 1.46902 * 109.47126 * 79.72912 * 9 8 2 11 11 C 1.46896 * 111.00080 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47093 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46830 * 294.99770 * 12 11 10 14 14 C 1.53000 * 109.47187 * 175.00278 * 12 11 10 15 15 N 1.46496 * 109.47630 * 54.99918 * 12 11 10 16 16 C 1.34777 * 120.00258 * 205.00405 * 15 12 11 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09003 * 109.47149 * 270.24774 * 1 2 3 29 29 H 1.09005 * 109.47107 * 30.24305 * 1 2 3 30 30 H 1.08997 * 109.47217 * 150.24523 * 1 2 3 31 31 H 1.07997 * 120.01182 * 0.03293 * 3 2 1 32 32 H 1.08003 * 120.01181 * 180.02562 * 6 4 3 33 33 H 1.07999 * 119.98608 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47060 * 319.73151 * 9 8 2 35 35 H 1.09000 * 109.47227 * 199.72850 * 9 8 2 36 36 H 1.00904 * 110.99986 * 56.04581 * 10 9 8 37 37 H 1.08994 * 109.47322 * 59.99980 * 11 10 9 38 38 H 1.09001 * 109.46773 * 299.99862 * 11 10 9 39 39 H 1.09002 * 109.46821 * 299.99498 * 14 12 11 40 40 H 1.08992 * 109.47302 * 59.99702 * 14 12 11 41 41 H 1.09006 * 109.47229 * 180.02562 * 14 12 11 42 42 H 0.96999 * 119.99694 * 24.99795 * 15 12 11 43 43 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 44 44 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 45 45 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5822 1.1968 -0.0062 5 9 4.2584 2.3665 -0.0121 6 6 4.2732 -0.0032 -0.0068 7 6 3.5805 -1.1987 -0.0008 8 6 2.1978 -1.1972 0.0050 9 6 1.4434 -2.5018 0.0112 10 7 0.9840 -2.8081 -1.3501 11 6 0.2423 -4.0757 -1.3826 12 6 -0.2183 -4.3605 -2.8135 13 1 -0.9346 -3.5993 -3.1228 14 6 -0.8815 -5.7381 -2.8712 15 7 0.9380 -4.3371 -3.7126 16 6 0.7693 -4.0582 -5.0204 17 8 -0.3399 -3.8269 -5.4529 18 6 1.9590 -4.0336 -5.9452 19 16 1.4107 -3.6327 -7.6229 20 6 2.9568 -3.6700 -8.4671 21 1 3.8631 -3.8949 -7.9245 22 6 3.0101 -3.4094 -9.8294 23 7 4.1651 -3.4378 -10.4602 24 14 1.4429 -3.0184 -10.7677 25 1 1.2072 -1.5524 -10.7486 26 1 1.5789 -3.4796 -12.1726 27 1 0.2966 -3.7123 -10.1276 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5100 31 1 1.6578 2.1325 0.0005 32 1 5.3532 -0.0046 -0.0112 33 1 4.1193 -2.1347 -0.0017 34 1 0.5830 -2.4208 0.6754 35 1 2.0991 -3.2990 0.3613 36 1 1.7576 -2.8247 -1.9977 37 1 -0.6264 -4.0053 -0.7281 38 1 0.8894 -4.8840 -1.0419 39 1 -0.1652 -6.4993 -2.5618 40 1 -1.7418 -5.7555 -2.2022 41 1 -1.2093 -5.9412 -3.8907 42 1 1.8251 -4.5223 -3.3668 43 1 2.6684 -3.2794 -5.6046 44 1 2.4400 -5.0117 -5.9444 45 1 4.2024 -3.2560 -11.4123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699393872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -68.401966 kcal Electronic energy + Delta-G solvation = -26214.758328 eV Core-core repulsion = 22272.289409 eV Total energy + Delta-G solvation = -3942.468919 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.13205 -39.96739 -39.47208 -37.04913 -34.68544 -33.02745 -32.43302 -31.88999 -30.78945 -28.67371 -27.67898 -26.39121 -25.60502 -24.07260 -22.61648 -21.72550 -21.11614 -20.38450 -17.95647 -17.51996 -17.06310 -16.69057 -16.47747 -15.88721 -15.84361 -15.42806 -15.31145 -14.97302 -14.82646 -14.34753 -14.07594 -13.88184 -13.68702 -13.48902 -13.44464 -13.32232 -12.85021 -12.78944 -12.75694 -12.36757 -12.32471 -12.12342 -12.03836 -11.76052 -11.51428 -11.25975 -11.24648 -11.06536 -10.99731 -10.58509 -9.84974 -9.48888 -9.23513 -9.03555 -8.97771 -8.92581 -8.70959 -8.49046 -6.90594 -6.28362 -3.99803 0.79204 0.91509 2.77237 2.99759 3.15179 3.31020 3.35068 3.51186 3.65595 3.89071 3.95972 4.33165 4.33898 4.38901 4.55767 4.59552 4.74100 4.79230 4.85097 4.92512 5.08772 5.10961 5.15966 5.22181 5.30106 5.32991 5.35055 5.36042 5.38166 5.48057 5.57416 5.67577 5.77039 5.81947 5.93649 5.97187 5.97851 6.01490 6.08687 6.24347 6.53337 6.58270 6.63811 6.97453 7.59656 7.94703 8.42025 8.51580 9.17961 10.80930 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.002644 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.679372 B =10588.521002 C =12534.067735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.028 4.028 3 C -0.159 4.159 4 C 0.104 3.896 5 F -0.141 7.141 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.101 4.101 9 C 0.101 3.899 10 N -0.683 5.683 11 C 0.053 3.947 12 C 0.145 3.855 13 H 0.096 0.904 14 C -0.163 4.163 15 N -0.732 5.732 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.087 0.913 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.347 0.653 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.394 0.606 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 1.620 27.993 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.178 4.178 4 C 0.084 3.916 5 F -0.119 7.119 6 C -0.180 4.180 7 C -0.099 4.099 8 C -0.102 4.102 9 C -0.028 4.028 10 N -0.315 5.315 11 C -0.077 4.077 12 C 0.040 3.960 13 H 0.114 0.886 14 C -0.222 4.222 15 N -0.387 5.387 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.167 0.833 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.227 0.773 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.209 2.446 27.148 28.195 hybrid contribution 2.389 -0.497 0.132 2.443 sum -4.821 1.950 27.280 27.771 Atomic orbital electron populations 1.20939 0.90169 1.04589 1.02265 1.19606 0.96653 0.91248 0.95346 1.21067 0.92213 0.99495 1.05026 1.17732 0.90196 0.81328 1.02306 1.91507 1.80313 1.46273 1.93845 1.21093 1.00909 0.91237 1.04790 1.20913 0.93416 0.97642 0.97882 1.19690 0.93190 0.94760 1.02570 1.20834 0.98084 0.92638 0.91224 1.60402 1.30626 1.33618 1.06844 1.22299 0.98862 0.89878 0.96638 1.20935 0.88911 0.98268 0.87868 0.88563 1.22165 1.00494 0.96351 1.03216 1.46006 1.10211 1.73923 1.08550 1.20218 0.90537 0.75334 0.81882 1.90697 1.26011 1.46941 1.75406 1.23285 0.98996 1.05589 0.99669 1.84789 1.15284 1.92603 0.98768 1.22320 0.92325 1.55514 0.96737 0.89448 1.24715 0.96548 0.93495 0.96555 1.69940 1.24392 1.47200 1.10228 0.86732 0.84586 0.80390 0.80135 1.19187 1.19972 1.15910 0.91238 0.91399 0.89014 0.84765 0.84759 0.85176 0.89752 0.94221 0.83332 0.89483 0.94596 0.92653 0.91766 0.91417 0.77283 0.88600 0.88642 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.26 36.00 0.33 -0.56 16 2 C -0.03 -0.24 5.88 -104.63 -0.62 -0.86 16 3 C -0.16 -1.49 9.68 -39.51 -0.38 -1.87 16 4 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 5 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 6 C -0.16 -1.43 10.03 -39.52 -0.40 -1.83 16 7 C -0.08 -0.63 9.67 -39.59 -0.38 -1.01 16 8 C -0.10 -0.82 5.39 -104.62 -0.56 -1.38 16 9 C 0.10 0.65 4.94 -4.98 -0.02 0.63 16 10 N -0.68 -5.27 5.80 -115.06 -0.67 -5.94 16 11 C 0.05 0.36 5.30 -3.83 -0.02 0.34 16 12 C 0.15 1.45 2.88 -67.94 -0.20 1.25 16 13 H 0.10 1.22 7.58 -51.93 -0.39 0.82 16 14 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 15 N -0.73 -8.46 4.35 -53.81 -0.23 -8.69 16 16 C 0.53 9.08 7.81 -10.98 -0.09 9.00 16 17 O -0.52 -10.81 15.53 5.56 0.09 -10.73 16 18 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 19 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 20 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 24 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.09 0.72 6.33 -51.93 -0.33 0.39 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.13 0.75 8.04 -52.49 -0.42 0.33 16 34 H 0.08 0.49 7.30 -51.93 -0.38 0.11 16 35 H 0.04 0.22 8.00 -51.93 -0.42 -0.20 16 36 H 0.35 2.94 7.57 -39.29 -0.30 2.64 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.39 3.48 8.15 -40.82 -0.33 3.15 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -34.07 392.12 -9.43 -43.49 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.79 Total: 2.63 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.83 Total: -10.85 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.13 Total: -40.52 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.07 -9.43 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699393872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.909 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds