Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38231 * 119.98721 * 2 1 4 4 C 1.38434 * 119.96871 * 180.29460 * 3 2 1 5 5 F 1.35108 * 120.01830 * 179.70826 * 4 3 2 6 6 C 1.38474 * 119.95273 * 359.73689 * 4 3 2 7 7 C 1.38176 * 119.97711 * 359.97438 * 6 4 3 8 8 C 1.38223 * 119.98724 * 179.75893 * 2 1 3 9 9 C 1.50699 * 119.97452 * 359.97162 * 8 2 1 10 10 N 1.46902 * 109.47126 * 79.72912 * 9 8 2 11 11 C 1.46896 * 111.00080 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47093 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46830 * 294.99770 * 12 11 10 14 14 C 1.53000 * 109.47187 * 175.00278 * 12 11 10 15 15 N 1.46496 * 109.47630 * 54.99918 * 12 11 10 16 16 C 1.34777 * 120.00258 * 205.00405 * 15 12 11 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 12 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 12 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09003 * 109.47149 * 270.24774 * 1 2 3 29 29 H 1.09005 * 109.47107 * 30.24305 * 1 2 3 30 30 H 1.08997 * 109.47217 * 150.24523 * 1 2 3 31 31 H 1.07997 * 120.01182 * 0.03293 * 3 2 1 32 32 H 1.08003 * 120.01181 * 180.02562 * 6 4 3 33 33 H 1.07999 * 119.98608 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47060 * 319.73151 * 9 8 2 35 35 H 1.09000 * 109.47227 * 199.72850 * 9 8 2 36 36 H 1.00904 * 110.99986 * 56.04581 * 10 9 8 37 37 H 1.08994 * 109.47322 * 59.99980 * 11 10 9 38 38 H 1.09001 * 109.46773 * 299.99862 * 11 10 9 39 39 H 1.09002 * 109.46821 * 299.99498 * 14 12 11 40 40 H 1.08992 * 109.47302 * 59.99702 * 14 12 11 41 41 H 1.09006 * 109.47229 * 180.02562 * 14 12 11 42 42 H 0.96999 * 119.99694 * 24.99795 * 15 12 11 43 43 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 44 44 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 45 45 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5822 1.1968 -0.0062 5 9 4.2584 2.3665 -0.0121 6 6 4.2732 -0.0032 -0.0068 7 6 3.5805 -1.1987 -0.0008 8 6 2.1978 -1.1972 0.0050 9 6 1.4434 -2.5018 0.0112 10 7 0.9840 -2.8081 -1.3501 11 6 0.2423 -4.0757 -1.3826 12 6 -0.2183 -4.3605 -2.8135 13 1 -0.9346 -3.5993 -3.1228 14 6 -0.8815 -5.7381 -2.8712 15 7 0.9380 -4.3371 -3.7126 16 6 0.7693 -4.0582 -5.0204 17 8 -0.3399 -3.8269 -5.4529 18 6 1.9590 -4.0336 -5.9452 19 16 1.4107 -3.6327 -7.6229 20 6 2.9568 -3.6700 -8.4671 21 1 3.8631 -3.8949 -7.9245 22 6 3.0101 -3.4094 -9.8294 23 7 4.1651 -3.4378 -10.4602 24 14 1.4429 -3.0184 -10.7677 25 1 1.2072 -1.5524 -10.7486 26 1 1.5789 -3.4796 -12.1726 27 1 0.2966 -3.7123 -10.1276 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5100 31 1 1.6578 2.1325 0.0005 32 1 5.3532 -0.0046 -0.0112 33 1 4.1193 -2.1347 -0.0017 34 1 0.5830 -2.4208 0.6754 35 1 2.0991 -3.2990 0.3613 36 1 1.7576 -2.8247 -1.9977 37 1 -0.6264 -4.0053 -0.7281 38 1 0.8894 -4.8840 -1.0419 39 1 -0.1652 -6.4993 -2.5618 40 1 -1.7418 -5.7555 -2.2022 41 1 -1.2093 -5.9412 -3.8907 42 1 1.8251 -4.5223 -3.3668 43 1 2.6684 -3.2794 -5.6046 44 1 2.4400 -5.0117 -5.9444 45 1 4.2024 -3.2560 -11.4123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699393872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -90.810789 kcal Electronic energy + Delta-G solvation = -26215.730047 eV Core-core repulsion = 22272.289409 eV Total energy + Delta-G solvation = -3943.440639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92287 -40.85327 -40.42210 -37.90740 -35.53588 -34.66956 -33.65968 -32.90140 -31.57537 -29.98908 -28.27653 -27.84521 -27.00962 -24.70001 -23.22379 -22.67276 -21.79381 -21.48729 -19.91122 -18.26385 -18.04855 -17.61993 -17.47825 -17.09357 -16.71137 -16.65955 -16.45231 -16.08013 -15.83292 -15.63868 -15.03947 -14.93286 -14.72515 -14.61362 -14.28222 -14.10756 -14.07766 -13.91452 -13.48562 -13.34381 -13.23038 -13.00504 -12.98582 -12.86413 -12.81478 -12.58257 -12.47407 -12.16841 -11.87185 -11.85529 -11.78443 -11.17038 -10.91534 -10.52037 -10.09587 -9.88077 -9.54189 -9.27806 -8.98243 -8.51583 -6.21656 0.12172 0.27492 1.00659 1.31480 1.47231 1.57229 1.64073 2.24087 2.29560 2.51519 2.73427 2.86882 3.27519 3.29944 3.73582 3.81823 3.86539 3.96129 4.00397 4.20081 4.23317 4.27219 4.29867 4.41088 4.48389 4.60756 4.66709 4.74494 4.76069 4.81087 4.83737 4.86121 4.90171 5.07409 5.13725 5.17814 5.31480 5.32840 5.39147 5.57932 5.62347 5.70762 5.94139 6.07766 6.11381 6.38406 6.51961 6.93952 7.27277 8.60897 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.002644 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.679372 B =10588.521002 C =12534.067735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.038 4.038 3 C -0.172 4.172 4 C 0.077 3.923 5 F -0.154 7.154 6 C -0.170 4.170 7 C -0.080 4.080 8 C -0.103 4.103 9 C 0.106 3.894 10 N -0.697 5.697 11 C 0.064 3.936 12 C 0.145 3.855 13 H 0.068 0.932 14 C -0.158 4.158 15 N -0.706 5.706 16 C 0.539 3.461 17 O -0.561 6.561 18 C -0.112 4.112 19 S -0.176 6.176 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.236 1.236 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.342 0.658 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.411 0.589 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 0.318 30.140 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.039 4.039 3 C -0.190 4.190 4 C 0.058 3.942 5 F -0.132 7.132 6 C -0.189 4.189 7 C -0.098 4.098 8 C -0.104 4.104 9 C -0.022 4.022 10 N -0.329 5.329 11 C -0.065 4.065 12 C 0.040 3.960 13 H 0.087 0.913 14 C -0.217 4.217 15 N -0.360 5.360 16 C 0.324 3.676 17 O -0.439 6.439 18 C -0.263 4.263 19 S 0.050 5.950 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.160 1.160 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.248 0.752 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.020 1.127 29.350 30.447 hybrid contribution 2.695 -0.131 -0.359 2.722 sum -5.325 0.997 28.991 29.493 Atomic orbital electron populations 1.20926 0.89219 1.04206 1.03183 1.19861 0.97457 0.91325 0.95272 1.21234 0.92139 1.00283 1.05387 1.18046 0.90767 0.81466 1.03958 1.91467 1.80587 1.47040 1.94150 1.21332 1.01650 0.91249 1.04657 1.21219 0.93588 0.98122 0.96920 1.19962 0.93479 0.95335 1.01602 1.20849 0.98659 0.92092 0.90629 1.60377 1.30695 1.34291 1.07507 1.22230 0.99853 0.90223 0.94183 1.21077 0.87701 0.98015 0.89170 0.91349 1.22111 1.01742 0.96122 1.01730 1.45771 1.11971 1.71521 1.06706 1.19849 0.88957 0.75489 0.83303 1.90688 1.27209 1.49515 1.76507 1.23282 1.00257 1.06817 0.95907 1.84721 1.13850 1.93057 1.03369 1.22471 0.93048 1.54869 0.97187 0.92011 1.25563 0.99434 0.93443 0.97559 1.70018 1.26300 1.48351 1.10933 0.85871 0.80864 0.80250 0.79423 1.18804 1.18348 1.15996 0.89636 0.91761 0.89340 0.84343 0.83766 0.82765 0.88741 0.92356 0.83935 0.87785 0.92346 0.90953 0.89539 0.94802 0.75212 0.87135 0.87007 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.26 71.23 0.66 -0.87 16 2 C -0.04 -0.62 5.88 -19.87 -0.12 -0.74 16 3 C -0.17 -3.20 9.68 22.31 0.22 -2.98 16 4 C 0.08 1.58 7.30 22.37 0.16 1.74 16 5 F -0.15 -3.56 17.27 44.97 0.78 -2.79 16 6 C -0.17 -2.88 10.03 22.31 0.22 -2.66 16 7 C -0.08 -1.08 9.67 22.26 0.22 -0.87 16 8 C -0.10 -1.42 5.39 -19.86 -0.11 -1.53 16 9 C 0.11 0.98 4.94 85.56 0.42 1.40 16 10 N -0.70 -8.46 5.80 -517.95 -3.00 -11.47 16 11 C 0.06 0.62 5.30 86.30 0.46 1.08 16 12 C 0.14 2.52 2.88 44.99 0.13 2.65 16 13 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 14 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 15 N -0.71 -14.60 4.35 -442.54 -1.93 -16.53 16 16 C 0.54 17.65 7.81 87.66 0.68 18.33 16 17 O -0.56 -23.40 15.53 -3.03 -0.05 -23.44 16 18 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16 19 S -0.18 -8.90 18.55 -56.49 -1.05 -9.95 16 20 C -0.53 -30.80 10.04 67.96 0.68 -30.12 16 21 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 22 C 0.05 2.67 5.50 84.86 0.47 3.14 16 23 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 24 Si 0.91 45.29 27.74 68.60 1.90 47.19 16 25 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.86 8.09 -2.38 -0.02 0.84 16 30 H 0.09 1.21 6.33 -2.39 -0.02 1.19 16 31 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 32 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.15 1.26 8.04 -2.91 -0.02 1.24 16 34 H 0.09 0.72 7.30 -2.39 -0.02 0.70 16 35 H 0.06 0.36 8.00 -2.39 -0.02 0.34 16 36 H 0.34 4.70 7.57 -89.69 -0.68 4.02 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.41 5.85 8.15 -92.71 -0.76 5.09 16 43 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 45 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -75.92 392.12 1.72 -74.21 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -0.46 Total: 15.58 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.22 Total: -16.95 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -4.63 Total: -83.86 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -75.92 1.72 -74.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699393872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.602 kcal (2) G-P(sol) polarization free energy of solvation -75.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds