Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37773 * 119.90486 * 2 1 4 4 C 1.39689 * 119.90642 * 179.71372 * 3 2 1 5 5 C 1.47571 * 120.14601 * 180.27291 * 4 3 2 6 6 O 1.21587 * 120.00047 * 127.22110 * 5 4 3 7 7 N 1.34776 * 120.00083 * 307.22422 * 5 4 3 8 8 C 1.47155 * 120.97715 * 4.60702 * 7 5 4 9 9 C 1.53300 * 108.37973 * 230.50737 * 8 7 5 10 10 O 1.42956 * 109.22379 * 307.70183 * 9 8 7 11 11 C 1.42961 * 114.16854 * 62.58064 * 10 9 8 12 12 H 1.08995 * 109.51322 * 57.34320 * 11 10 9 13 13 C 1.53008 * 109.51184 * 177.44267 * 11 10 9 14 14 N 1.46497 * 109.47239 * 299.99988 * 13 11 10 15 15 C 1.36936 * 119.99739 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00602 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99614 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00476 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99777 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47541 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47512 * 119.99929 * 19 17 15 22 22 H 1.48507 * 109.47205 * 239.99579 * 19 17 15 23 23 C 1.47153 * 120.98137 * 184.31990 * 7 5 4 24 24 C 1.39939 * 119.71505 * 0.58131 * 4 3 2 25 25 F 1.35101 * 120.09728 * 179.73142 * 24 4 3 26 26 C 1.38159 * 119.80651 * 359.71517 * 24 4 3 27 27 C 1.38529 * 120.09694 * 359.97274 * 26 24 4 28 28 F 1.35091 * 119.86350 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.46762 * 269.72297 * 1 2 3 30 30 H 1.09002 * 109.47356 * 149.72783 * 1 2 3 31 31 H 1.09000 * 109.47358 * 29.72265 * 1 2 3 32 32 H 1.08000 * 120.04603 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.68489 * 350.23211 * 8 7 5 34 34 H 1.08998 * 109.68151 * 110.75268 * 8 7 5 35 35 H 1.09003 * 109.51108 * 67.62581 * 9 8 7 36 36 H 1.08998 * 109.51389 * 187.77173 * 9 8 7 37 37 H 1.09006 * 109.46782 * 59.99895 * 13 11 10 38 38 H 1.09003 * 109.46798 * 179.97438 * 13 11 10 39 39 H 0.97003 * 119.99724 * 0.02562 * 14 13 11 40 40 H 0.96995 * 120.00852 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.68100 * 249.21036 * 23 7 5 42 42 H 1.08995 * 109.68217 * 9.76796 * 23 7 5 43 43 H 1.08010 * 119.95252 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1943 0.0000 4 6 3.5908 1.1943 0.0061 5 6 4.3319 2.4705 0.0122 6 8 5.1843 2.6744 0.8548 7 7 4.0637 3.4099 -0.9163 8 6 2.9693 3.2286 -1.8831 9 6 3.5190 3.4900 -3.2901 10 8 4.1798 4.7575 -3.3093 11 6 5.3140 4.8395 -2.4430 12 1 6.0295 4.0603 -2.7052 13 6 5.9743 6.2115 -2.5940 14 7 6.4062 6.3955 -3.9818 15 6 7.0277 7.5565 -4.3572 16 1 7.1992 8.3367 -3.6304 17 6 7.4364 7.7310 -5.6723 18 7 7.2270 6.7804 -6.5582 19 14 8.2836 9.3150 -6.1846 20 1 8.3982 10.2172 -5.0107 21 1 9.6393 9.0052 -6.7056 22 1 7.4864 9.9822 -7.2451 23 6 4.8527 4.6499 -0.9890 24 6 4.2845 -0.0210 -0.0002 25 9 5.6355 -0.0299 0.0001 26 6 3.5839 -1.2117 -0.0064 27 6 2.1986 -1.2026 -0.0058 28 9 1.5182 -2.3696 -0.0114 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3634 -0.8875 -0.5181 31 1 -0.3634 0.8924 -0.5095 32 1 1.6531 2.1291 0.0004 33 1 2.5896 2.2088 -1.8209 34 1 2.1666 3.9331 -1.6653 35 1 4.2281 2.7057 -3.5554 36 1 2.6976 3.4966 -4.0065 37 1 5.2587 6.9902 -2.3299 38 1 6.8387 6.2734 -1.9329 39 1 6.2518 5.6949 -4.6347 40 1 7.5129 6.9021 -7.4771 41 1 4.2365 5.4955 -0.6832 42 1 5.7207 4.5717 -0.3345 43 1 4.1169 -2.1511 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700154644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -118.405833 kcal Electronic energy + Delta-G solvation = -29566.243299 eV Core-core repulsion = 25055.392874 eV Total energy + Delta-G solvation = -4510.850425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.58367 -49.38445 -40.85155 -39.21422 -38.17480 -35.16611 -34.43508 -33.20616 -32.45009 -31.54877 -30.12998 -28.20577 -27.30162 -25.89173 -24.39021 -23.52897 -23.00059 -22.11029 -20.89087 -19.67834 -18.65817 -18.02417 -17.71779 -17.08704 -16.76036 -16.44207 -16.17397 -15.95480 -15.71198 -15.33041 -15.30551 -15.04101 -14.89256 -14.51137 -14.41394 -14.11451 -13.92538 -13.67303 -13.31734 -13.15737 -12.87634 -12.67286 -12.62324 -12.49476 -12.36529 -12.02198 -11.87974 -11.63170 -11.04993 -10.90786 -10.80715 -10.58222 -10.20719 -10.00720 -9.93501 -9.69385 -9.58225 -9.13084 -8.86682 -8.64743 -6.88720 -5.72411 -3.01160 0.11273 0.39225 2.20153 2.49721 2.84809 3.26774 3.46065 3.51420 3.53857 3.77266 3.85499 3.89735 3.99886 4.07581 4.44511 4.56320 4.68148 4.77653 4.84644 4.97863 5.02533 5.04735 5.09283 5.13612 5.21010 5.25025 5.33982 5.40642 5.49805 5.56191 5.59851 5.60454 5.65491 5.82278 5.90664 6.09342 6.18672 6.26841 6.54700 6.67727 7.03064 7.41432 7.72962 7.78906 8.45606 9.57524 10.14480 10.50466 11.50437 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.002334 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.598862 B =11992.164138 C =12261.449317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.036 4.036 4 C -0.166 4.166 5 C 0.563 3.437 6 O -0.520 6.520 7 N -0.604 5.604 8 C 0.063 3.937 9 C 0.046 3.954 10 O -0.355 6.355 11 C 0.073 3.927 12 H 0.064 0.936 13 C 0.164 3.836 14 N -0.726 5.726 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.086 3.914 24 C 0.174 3.826 25 F -0.114 7.114 26 C -0.191 4.191 27 C 0.148 3.852 28 F -0.124 7.124 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.388 0.612 40 H 0.254 0.746 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 -18.072 14.524 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.134 4.134 3 C -0.055 4.055 4 C -0.170 4.170 5 C 0.350 3.650 6 O -0.396 6.396 7 N -0.337 5.337 8 C -0.060 4.060 9 C -0.032 4.032 10 O -0.273 6.273 11 C 0.014 3.986 12 H 0.082 0.918 13 C 0.035 3.965 14 N -0.370 5.370 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.036 4.036 24 C 0.153 3.847 25 F -0.092 7.092 26 C -0.210 4.210 27 C 0.128 3.872 28 F -0.102 7.102 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.077 -17.666 14.871 28.137 hybrid contribution 0.612 0.038 -0.459 0.766 sum -15.465 -17.628 14.412 27.524 Atomic orbital electron populations 1.20765 0.88855 1.04047 1.03414 1.19911 0.97895 0.91131 1.04414 1.20971 0.91228 0.98400 0.94853 1.20010 0.94638 0.93098 1.09262 1.17906 0.82697 0.82852 0.81502 1.90847 1.32995 1.79048 1.36706 1.48069 1.33998 1.19428 1.32213 1.22794 0.89858 1.03169 0.90184 1.22918 0.97743 0.87727 0.94853 1.88174 1.43428 1.31557 1.64100 1.22903 0.87629 1.00730 0.87304 0.91779 1.20626 0.95354 0.90837 0.89646 1.42215 1.70581 1.19800 1.04448 1.19270 1.29678 0.94254 0.93760 0.91074 1.24746 1.02007 0.98156 0.96112 1.69681 1.52543 1.32929 1.02858 0.86108 0.78910 0.82900 0.78210 1.20543 1.21907 1.21886 1.22516 0.97175 0.85039 0.98863 1.17150 0.77530 0.92077 0.97930 1.91619 1.27580 1.97148 1.92826 1.20986 0.93114 0.98968 1.07972 1.17273 0.88828 0.81349 0.99766 1.91539 1.79623 1.45824 1.93254 0.90286 0.90663 0.90287 0.83123 0.88771 0.89837 0.92779 0.87576 0.95311 0.94617 0.77819 0.93611 0.89940 0.87842 0.82538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 9.83 36.01 0.35 -0.12 16 2 C -0.13 -0.85 5.88 -104.61 -0.62 -1.47 16 3 C -0.04 -0.26 7.07 -39.21 -0.28 -0.54 16 4 C -0.17 -1.73 4.94 -104.91 -0.52 -2.25 16 5 C 0.56 7.58 6.95 -12.45 -0.09 7.50 16 6 O -0.52 -8.91 16.31 5.29 0.09 -8.82 16 7 N -0.60 -7.50 3.01 -173.23 -0.52 -8.02 16 8 C 0.06 0.59 5.60 -3.53 -0.02 0.57 16 9 C 0.05 0.55 6.98 37.31 0.26 0.81 16 10 O -0.35 -6.04 10.13 -35.23 -0.36 -6.39 16 11 C 0.07 1.24 2.88 -26.36 -0.08 1.16 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 13 C 0.16 3.33 5.96 -4.04 -0.02 3.31 16 14 N -0.73 -18.91 5.50 -59.90 -0.33 -19.24 16 15 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 19 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C 0.09 1.21 5.94 -3.32 -0.02 1.19 16 24 C 0.17 1.84 7.27 -38.97 -0.28 1.56 16 25 F -0.11 -1.47 16.63 2.25 0.04 -1.44 16 26 C -0.19 -1.55 9.99 -39.50 -0.39 -1.95 16 27 C 0.15 1.10 7.24 -39.29 -0.28 0.82 16 28 F -0.12 -0.94 16.46 2.25 0.04 -0.91 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 7.63 -51.93 -0.40 -0.09 16 31 H 0.08 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.15 0.78 7.25 -52.49 -0.38 0.40 16 33 H 0.09 0.68 4.86 -51.93 -0.25 0.43 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.39 10.75 7.54 -40.82 -0.31 10.44 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 43 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -34.88 365.77 -7.54 -42.42 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.48 Total: 4.03 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.23 Total: 3.14 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.13 Total: -55.20 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.27 Total: -15.22 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.07 Total: -2.34 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.88 -7.54 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700154644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.986 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds