Wall clock time and date at job start Sat Apr 11 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37773 * 119.90486 * 2 1 4 4 C 1.39689 * 119.90642 * 179.71372 * 3 2 1 5 5 C 1.47571 * 120.14601 * 180.27291 * 4 3 2 6 6 O 1.21587 * 120.00047 * 127.22110 * 5 4 3 7 7 N 1.34776 * 120.00083 * 307.22422 * 5 4 3 8 8 C 1.47155 * 120.97715 * 4.60702 * 7 5 4 9 9 C 1.53300 * 108.37973 * 230.50737 * 8 7 5 10 10 O 1.42956 * 109.22379 * 307.70183 * 9 8 7 11 11 C 1.42961 * 114.16854 * 62.58064 * 10 9 8 12 12 H 1.08995 * 109.51322 * 57.34320 * 11 10 9 13 13 C 1.53008 * 109.51184 * 177.44267 * 11 10 9 14 14 N 1.46497 * 109.47239 * 299.99988 * 13 11 10 15 15 C 1.36936 * 119.99739 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00602 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99614 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00476 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99777 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47541 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47512 * 119.99929 * 19 17 15 22 22 H 1.48507 * 109.47205 * 239.99579 * 19 17 15 23 23 C 1.47153 * 120.98137 * 184.31990 * 7 5 4 24 24 C 1.39939 * 119.71505 * 0.58131 * 4 3 2 25 25 F 1.35101 * 120.09728 * 179.73142 * 24 4 3 26 26 C 1.38159 * 119.80651 * 359.71517 * 24 4 3 27 27 C 1.38529 * 120.09694 * 359.97274 * 26 24 4 28 28 F 1.35091 * 119.86350 * 180.02562 * 27 26 24 29 29 H 1.08998 * 109.46762 * 269.72297 * 1 2 3 30 30 H 1.09002 * 109.47356 * 149.72783 * 1 2 3 31 31 H 1.09000 * 109.47358 * 29.72265 * 1 2 3 32 32 H 1.08000 * 120.04603 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.68489 * 350.23211 * 8 7 5 34 34 H 1.08998 * 109.68151 * 110.75268 * 8 7 5 35 35 H 1.09003 * 109.51108 * 67.62581 * 9 8 7 36 36 H 1.08998 * 109.51389 * 187.77173 * 9 8 7 37 37 H 1.09006 * 109.46782 * 59.99895 * 13 11 10 38 38 H 1.09003 * 109.46798 * 179.97438 * 13 11 10 39 39 H 0.97003 * 119.99724 * 0.02562 * 14 13 11 40 40 H 0.96995 * 120.00852 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.68100 * 249.21036 * 23 7 5 42 42 H 1.08995 * 109.68217 * 9.76796 * 23 7 5 43 43 H 1.08010 * 119.95252 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1943 0.0000 4 6 3.5908 1.1943 0.0061 5 6 4.3319 2.4705 0.0122 6 8 5.1843 2.6744 0.8548 7 7 4.0637 3.4099 -0.9163 8 6 2.9693 3.2286 -1.8831 9 6 3.5190 3.4900 -3.2901 10 8 4.1798 4.7575 -3.3093 11 6 5.3140 4.8395 -2.4430 12 1 6.0295 4.0603 -2.7052 13 6 5.9743 6.2115 -2.5940 14 7 6.4062 6.3955 -3.9818 15 6 7.0277 7.5565 -4.3572 16 1 7.1992 8.3367 -3.6304 17 6 7.4364 7.7310 -5.6723 18 7 7.2270 6.7804 -6.5582 19 14 8.2836 9.3150 -6.1846 20 1 8.3982 10.2172 -5.0107 21 1 9.6393 9.0052 -6.7056 22 1 7.4864 9.9822 -7.2451 23 6 4.8527 4.6499 -0.9890 24 6 4.2845 -0.0210 -0.0002 25 9 5.6355 -0.0299 0.0001 26 6 3.5839 -1.2117 -0.0064 27 6 2.1986 -1.2026 -0.0058 28 9 1.5182 -2.3696 -0.0114 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3634 -0.8875 -0.5181 31 1 -0.3634 0.8924 -0.5095 32 1 1.6531 2.1291 0.0004 33 1 2.5896 2.2088 -1.8209 34 1 2.1666 3.9331 -1.6653 35 1 4.2281 2.7057 -3.5554 36 1 2.6976 3.4966 -4.0065 37 1 5.2587 6.9902 -2.3299 38 1 6.8387 6.2734 -1.9329 39 1 6.2518 5.6949 -4.6347 40 1 7.5129 6.9021 -7.4771 41 1 4.2365 5.4955 -0.6832 42 1 5.7207 4.5717 -0.3345 43 1 4.1169 -2.1511 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700154644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:49 Heat of formation + Delta-G solvation = -141.828154 kcal Electronic energy + Delta-G solvation = -29567.258968 eV Core-core repulsion = 25055.392874 eV Total energy + Delta-G solvation = -4511.866094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.24462 -50.17475 -41.81459 -40.10009 -39.22587 -36.70223 -35.85837 -34.00082 -33.73329 -32.62063 -31.61169 -29.38931 -27.78934 -27.40841 -25.27442 -25.01081 -23.91579 -23.28482 -22.22932 -20.59714 -19.35313 -19.25964 -18.76399 -18.51525 -17.83245 -17.37364 -17.14322 -16.79110 -16.67536 -16.48335 -16.35583 -16.08658 -15.90627 -15.65814 -15.59659 -15.14058 -15.03129 -14.49819 -14.43909 -14.27245 -14.21275 -13.95089 -13.50076 -13.45956 -13.10283 -12.99499 -12.82298 -12.68481 -12.55823 -12.53682 -12.26988 -12.02647 -11.89937 -11.71944 -11.31131 -11.09762 -10.96851 -10.23728 -9.82221 -9.68270 -9.00825 -7.93951 -5.23510 -0.57782 -0.21883 1.24647 1.48124 1.49484 1.58798 1.60142 2.11850 2.56459 2.61631 2.72263 3.04167 3.14693 3.38458 3.40002 3.50540 3.56976 3.82074 3.87782 3.91134 4.01906 4.11542 4.29294 4.35511 4.40136 4.43649 4.50015 4.60772 4.61712 4.63246 4.71443 4.73735 4.82174 4.82536 4.93368 5.07520 5.08947 5.14010 5.19633 5.49096 5.53188 6.05777 6.20059 6.27803 6.77712 7.33741 8.07545 8.32222 9.30014 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.002334 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.598862 B =11992.164138 C =12261.449317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.117 4.117 3 C -0.026 4.026 4 C -0.179 4.179 5 C 0.562 3.438 6 O -0.567 6.567 7 N -0.602 5.602 8 C 0.067 3.933 9 C 0.037 3.963 10 O -0.383 6.383 11 C 0.087 3.913 12 H 0.044 0.956 13 C 0.160 3.840 14 N -0.741 5.741 15 C -0.245 4.245 16 H 0.079 0.921 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.292 1.292 23 C 0.096 3.904 24 C 0.146 3.854 25 F -0.137 7.137 26 C -0.185 4.185 27 C 0.147 3.853 28 F -0.123 7.123 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.179 0.821 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.044 0.956 36 H 0.133 0.867 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.309 -18.164 15.248 30.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.118 4.118 3 C -0.044 4.044 4 C -0.183 4.183 5 C 0.351 3.649 6 O -0.446 6.446 7 N -0.335 5.335 8 C -0.054 4.054 9 C -0.040 4.040 10 O -0.302 6.302 11 C 0.028 3.972 12 H 0.062 0.938 13 C 0.033 3.967 14 N -0.383 5.383 15 C -0.377 4.377 16 H 0.097 0.903 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.221 1.221 22 H -0.219 1.219 23 C -0.027 4.027 24 C 0.125 3.875 25 F -0.116 7.116 26 C -0.205 4.205 27 C 0.127 3.873 28 F -0.101 7.101 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.196 0.804 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.150 0.850 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.836 -17.764 15.624 30.240 hybrid contribution 1.353 -0.036 -0.656 1.504 sum -17.483 -17.800 14.968 29.095 Atomic orbital electron populations 1.20900 0.86621 1.05297 1.04426 1.20197 0.99281 0.90191 1.02098 1.21209 0.89626 0.99873 0.93724 1.19899 0.95844 0.91308 1.11252 1.18366 0.82145 0.83589 0.80818 1.90815 1.35156 1.79981 1.38694 1.48140 1.34267 1.18603 1.32457 1.22998 0.89172 1.05645 0.87569 1.23237 0.97970 0.85422 0.97405 1.88112 1.43299 1.34293 1.64478 1.22550 0.87599 0.97858 0.89209 0.93767 1.20775 0.95844 0.93208 0.86849 1.42412 1.70671 1.18859 1.06381 1.19704 1.28891 0.95013 0.94070 0.90319 1.25621 1.03457 1.01598 0.96302 1.69844 1.54199 1.35046 1.02969 0.85023 0.77303 0.79124 0.77985 1.18875 1.22076 1.21911 1.22262 0.97524 0.86608 0.96308 1.17438 0.76796 0.93162 1.00069 1.91555 1.29360 1.97300 1.93342 1.21073 0.93614 0.98654 1.07117 1.17385 0.88566 0.81867 0.99493 1.91550 1.79457 1.45893 1.93186 0.89236 0.90397 0.88168 0.80416 0.86005 0.87130 0.93784 0.84959 0.94703 0.94027 0.79300 0.94019 0.88310 0.89006 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 9.83 71.24 0.70 0.25 16 2 C -0.12 -1.10 5.88 -19.86 -0.12 -1.22 16 3 C -0.03 -0.29 7.07 22.51 0.16 -0.13 16 4 C -0.18 -3.53 4.94 -20.05 -0.10 -3.63 16 5 C 0.56 14.94 6.95 86.71 0.60 15.54 16 6 O -0.57 -20.01 16.31 -3.99 -0.07 -20.07 16 7 N -0.60 -14.27 3.01 -820.24 -2.47 -16.75 16 8 C 0.07 1.09 5.60 86.36 0.48 1.57 16 9 C 0.04 0.83 6.98 72.08 0.50 1.33 16 10 O -0.38 -12.89 10.13 -148.98 -1.51 -14.40 16 11 C 0.09 2.97 2.88 30.84 0.09 3.06 16 12 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 13 C 0.16 6.59 5.96 86.38 0.51 7.11 16 14 N -0.74 -39.31 5.50 -343.44 -1.89 -41.20 16 15 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 18 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 19 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 C 0.10 2.66 5.94 86.49 0.51 3.18 16 24 C 0.15 3.07 7.27 22.66 0.16 3.24 16 25 F -0.14 -3.75 16.63 44.97 0.75 -3.00 16 26 C -0.19 -2.81 9.99 22.32 0.22 -2.59 16 27 C 0.15 1.84 7.24 22.46 0.16 2.00 16 28 F -0.12 -1.55 16.46 44.97 0.74 -0.81 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.32 7.63 -2.39 -0.02 0.30 16 31 H 0.10 0.03 8.08 -2.39 -0.02 0.01 16 32 H 0.18 1.00 7.25 -2.91 -0.02 0.98 16 33 H 0.12 1.31 4.86 -2.39 -0.01 1.29 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.38 21.47 7.54 -92.71 -0.70 20.77 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.09 2.77 7.11 -2.39 -0.02 2.76 16 43 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -78.04 365.77 3.43 -74.61 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.36 Total: 20.84 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 5.21 Total: 12.39 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -4.08 Total: -118.50 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.57 Total: -34.48 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 1.49 Total: -3.82 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.04 3.43 -74.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700154644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.218 kcal (2) G-P(sol) polarization free energy of solvation -78.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds