Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35369 * 126.38305 * 2 1 4 4 C 1.41499 * 105.50172 * 180.09007 * 3 2 1 5 5 C 1.47708 * 126.51617 * 179.90083 * 4 3 2 6 6 O 1.21567 * 120.00312 * 5.95241 * 5 4 3 7 7 N 1.34777 * 119.99650 * 185.95677 * 5 4 3 8 8 C 1.46500 * 120.00409 * 5.37010 * 7 5 4 9 9 C 1.46509 * 119.99822 * 185.37471 * 7 5 4 10 10 H 1.08998 * 109.46798 * 0.02562 * 9 7 5 11 11 C 1.52991 * 109.47098 * 239.99714 * 9 7 5 12 12 C 1.52999 * 109.46991 * 119.99608 * 9 7 5 13 13 N 1.46499 * 109.47340 * 305.00331 * 12 9 7 14 14 C 1.34781 * 120.00007 * 180.02562 * 13 12 9 15 15 O 1.21275 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99857 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.46888 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00085 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00072 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00489 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00223 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99461 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47563 * 89.99613 * 22 20 18 24 24 H 1.48503 * 109.47120 * 209.99310 * 22 20 18 25 25 H 1.48499 * 109.47457 * 329.99396 * 22 20 18 26 26 N 1.31813 * 106.96309 * 359.63573 * 4 3 2 27 27 N 1.28467 * 110.07396 * 0.22852 * 26 4 3 28 28 H 0.96998 * 124.88419 * 179.97438 * 27 26 4 29 29 H 1.09006 * 109.47053 * 270.29501 * 1 2 3 30 30 H 1.08998 * 109.47726 * 30.29453 * 1 2 3 31 31 H 1.08996 * 109.47503 * 150.29724 * 1 2 3 32 32 H 1.07998 * 127.24610 * 359.96648 * 3 2 1 33 33 H 1.09001 * 109.47545 * 275.36655 * 8 7 5 34 34 H 1.09004 * 109.47395 * 155.36107 * 8 7 5 35 35 H 1.09006 * 109.46846 * 35.36371 * 8 7 5 36 36 H 1.09005 * 109.47546 * 300.00269 * 11 9 7 37 37 H 1.08998 * 109.47287 * 59.99875 * 11 9 7 38 38 H 1.09004 * 109.47293 * 180.02562 * 11 9 7 39 39 H 1.09002 * 109.47287 * 64.99970 * 12 9 7 40 40 H 1.08997 * 109.47243 * 185.00151 * 12 9 7 41 41 H 0.96999 * 120.00051 * 359.97438 * 13 12 9 42 42 H 1.09002 * 109.47043 * 300.00251 * 16 14 13 43 43 H 1.08997 * 109.46843 * 60.00038 * 16 14 13 44 44 H 0.97007 * 119.99967 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5855 -0.0021 5 6 4.8764 1.3813 -0.0050 6 8 4.8245 2.5910 0.1034 7 7 6.0693 0.7663 -0.1280 8 6 6.1276 -0.6763 -0.3766 9 6 7.3079 1.5404 -0.0129 10 1 7.0662 2.5872 0.1709 11 6 8.1063 1.4213 -1.3125 12 6 8.1419 0.9984 1.1496 13 7 7.3353 1.0015 2.3725 14 6 7.8666 0.5639 3.5313 15 8 9.0122 0.1672 3.5616 16 6 7.0369 0.5677 4.7895 17 16 8.0241 -0.0723 6.1649 18 6 6.8431 0.0403 7.4676 19 1 5.8524 0.4208 7.2669 20 6 7.1854 -0.3609 8.7515 21 7 6.3033 -0.2763 9.7247 22 14 8.8986 -1.0197 9.0984 23 1 9.7933 0.1031 9.4782 24 1 8.8358 -2.0007 10.2114 25 1 9.4289 -1.6852 7.8814 26 7 3.5420 -0.7296 0.0048 27 7 2.3081 -1.0870 0.0061 28 1 1.9966 -2.0057 0.0105 29 1 -0.3633 0.0053 1.0277 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 2.0056 2.1260 -0.0005 33 1 6.0607 -1.2113 0.5707 34 1 7.0692 -0.9227 -0.8673 35 1 5.2962 -0.9683 -1.0182 36 1 8.3479 0.3743 -1.4960 37 1 7.5121 1.8074 -2.1407 38 1 9.0280 1.9969 -1.2268 39 1 8.4583 -0.0204 0.9257 40 1 9.0198 1.6285 1.2918 41 1 6.4191 1.3192 2.3484 42 1 6.7205 1.5865 5.0129 43 1 6.1591 -0.0626 4.6476 44 1 6.5427 -0.5564 10.6220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701170189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = 7.804742 kcal Electronic energy + Delta-G solvation = -27029.738781 eV Core-core repulsion = 23110.494395 eV Total energy + Delta-G solvation = -3919.244387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.03257 -40.24062 -38.99637 -36.76994 -34.24897 -33.17541 -32.44234 -32.40747 -31.45010 -29.47558 -27.49562 -27.14089 -26.00644 -25.51693 -24.63138 -21.60529 -21.20077 -20.36897 -19.25505 -18.17401 -17.84133 -17.05181 -16.62948 -16.44998 -16.22181 -15.83545 -15.20451 -15.04535 -14.93321 -14.21856 -14.11062 -13.91308 -13.66620 -13.55386 -13.44098 -13.29258 -13.09886 -12.96789 -12.77010 -12.75160 -12.54701 -12.38357 -12.16168 -11.82808 -11.24761 -11.23327 -10.98790 -10.96455 -10.57410 -10.31628 -9.83689 -9.72527 -9.49236 -9.28949 -8.99036 -8.93560 -8.90273 -8.47048 -6.88534 -6.26496 -3.97713 1.26165 1.75342 2.39581 2.72679 2.82844 3.03495 3.12985 3.33795 3.37487 3.52353 3.70606 4.01880 4.28831 4.35425 4.44029 4.55159 4.72700 4.82056 4.94436 4.95242 4.98969 5.03261 5.12524 5.25361 5.31192 5.32447 5.38010 5.40502 5.43751 5.55938 5.61882 5.71434 5.74212 5.82028 5.89533 6.02419 6.07431 6.27032 6.58124 6.61808 7.05054 7.48958 7.65881 7.91040 7.96723 8.44677 8.54083 9.19721 10.82853 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.002911 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.820269 B = 9616.461752 C =11492.506012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.015 3.985 3 C -0.177 4.177 4 C -0.011 4.011 5 C 0.602 3.398 6 O -0.531 6.531 7 N -0.599 5.599 8 C 0.081 3.919 9 C 0.124 3.876 10 H 0.111 0.889 11 C -0.157 4.157 12 C 0.113 3.887 13 N -0.732 5.732 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 N -0.250 5.250 27 N -0.382 5.382 28 H 0.445 0.555 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 -0.607 -27.572 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.171 4.171 5 C 0.389 3.611 6 O -0.405 6.405 7 N -0.332 5.332 8 C -0.062 4.062 9 C 0.020 3.980 10 H 0.129 0.871 11 C -0.216 4.216 12 C -0.012 4.012 13 N -0.386 5.386 14 C 0.318 3.682 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.086 5.914 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 N -0.087 5.087 27 N -0.096 5.096 28 H 0.289 0.711 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.015 -1.561 -27.270 28.201 hybrid contribution -1.879 0.379 0.440 1.967 sum -8.895 -1.181 -26.830 28.291 Atomic orbital electron populations 1.20378 0.86455 1.03954 1.03698 1.21489 0.95509 0.87118 1.06960 1.21519 0.90375 0.99830 1.08812 1.21801 0.94985 0.89819 1.10515 1.17003 0.81611 0.86213 0.76308 1.90809 1.86329 1.13005 1.50375 1.47742 1.05007 1.09716 1.70716 1.21963 1.02825 0.79081 1.02285 1.21444 0.83635 0.97826 0.95058 0.87149 1.22060 1.00376 1.02920 0.96235 1.21674 0.94072 1.02142 0.83329 1.45878 1.16888 1.67722 1.08138 1.20238 0.87535 0.76376 0.84060 1.90688 1.17900 1.45559 1.85474 1.23271 1.02533 1.05675 0.95940 1.84726 1.21464 1.83768 1.01472 1.22333 1.00527 1.49995 0.93991 0.89442 1.24711 0.97655 0.94072 0.94873 1.69940 1.34565 1.45986 1.01299 0.86729 0.84424 0.80264 0.80399 1.19188 1.19976 1.15914 1.73784 1.01135 1.14856 1.18931 1.43441 1.03154 1.09670 1.53374 0.71077 0.89998 0.89447 0.91069 0.81993 0.91900 0.91167 0.89855 0.91776 0.91617 0.90686 0.91159 0.90245 0.76736 0.88541 0.88705 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.31 10.44 36.01 0.38 0.06 16 2 C 0.01 0.11 7.23 -82.21 -0.59 -0.49 16 3 C -0.18 -1.73 10.73 -39.36 -0.42 -2.15 16 4 C -0.01 -0.12 6.75 -82.77 -0.56 -0.68 16 5 C 0.60 7.44 7.37 -12.39 -0.09 7.35 16 6 O -0.53 -7.90 16.27 5.31 0.09 -7.81 16 7 N -0.60 -6.16 2.24 -175.09 -0.39 -6.55 16 8 C 0.08 0.71 8.43 59.85 0.50 1.22 16 9 C 0.12 1.20 2.79 -67.93 -0.19 1.01 16 10 H 0.11 1.21 6.91 -51.93 -0.36 0.85 16 11 C -0.16 -1.13 9.18 37.15 0.34 -0.78 16 12 C 0.11 1.32 4.97 -4.04 -0.02 1.30 16 13 N -0.73 -10.57 5.39 -60.29 -0.32 -10.89 16 14 C 0.53 10.04 7.85 -10.98 -0.09 9.95 16 15 O -0.52 -11.55 15.86 5.56 0.09 -11.46 16 16 C -0.12 -2.56 6.16 36.01 0.22 -2.33 16 17 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 18 C -0.52 -15.39 10.04 30.94 0.31 -15.08 16 19 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -27.00 13.97 55.49 0.78 -26.23 16 22 Si 0.86 22.13 27.74 -169.99 -4.71 17.42 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 26 N -0.25 -2.43 9.02 33.42 0.30 -2.13 16 27 N -0.38 -2.67 6.83 33.50 0.23 -2.44 16 28 H 0.44 1.57 8.96 -190.44 -1.71 -0.13 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 35 H 0.08 0.71 5.96 -51.93 -0.31 0.40 16 36 H 0.06 0.41 6.67 -51.93 -0.35 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.40 5.47 7.87 -40.82 -0.32 5.15 16 42 H 0.10 1.90 8.14 -51.91 -0.42 1.48 16 43 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 44 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -37.56 382.57 -8.07 -45.64 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.59 Total: 2.25 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.30 Total: 2.12 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.59 Total: -48.24 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.17 Total: -19.27 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.56 -8.07 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701170189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.443 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds