Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35369 * 126.38305 * 2 1 4 4 C 1.41499 * 105.50172 * 180.09007 * 3 2 1 5 5 C 1.47708 * 126.51617 * 179.90083 * 4 3 2 6 6 O 1.21567 * 120.00312 * 5.95241 * 5 4 3 7 7 N 1.34777 * 119.99650 * 185.95677 * 5 4 3 8 8 C 1.46500 * 120.00409 * 5.37010 * 7 5 4 9 9 C 1.46509 * 119.99822 * 185.37471 * 7 5 4 10 10 H 1.08998 * 109.46798 * 0.02562 * 9 7 5 11 11 C 1.52991 * 109.47098 * 239.99714 * 9 7 5 12 12 C 1.52999 * 109.46991 * 119.99608 * 9 7 5 13 13 N 1.46499 * 109.47340 * 305.00331 * 12 9 7 14 14 C 1.34781 * 120.00007 * 180.02562 * 13 12 9 15 15 O 1.21275 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99857 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.46888 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00085 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00072 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00489 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00223 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99461 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47563 * 89.99613 * 22 20 18 24 24 H 1.48503 * 109.47120 * 209.99310 * 22 20 18 25 25 H 1.48499 * 109.47457 * 329.99396 * 22 20 18 26 26 N 1.31813 * 106.96309 * 359.63573 * 4 3 2 27 27 N 1.28467 * 110.07396 * 0.22852 * 26 4 3 28 28 H 0.96998 * 124.88419 * 179.97438 * 27 26 4 29 29 H 1.09006 * 109.47053 * 270.29501 * 1 2 3 30 30 H 1.08998 * 109.47726 * 30.29453 * 1 2 3 31 31 H 1.08996 * 109.47503 * 150.29724 * 1 2 3 32 32 H 1.07998 * 127.24610 * 359.96648 * 3 2 1 33 33 H 1.09001 * 109.47545 * 275.36655 * 8 7 5 34 34 H 1.09004 * 109.47395 * 155.36107 * 8 7 5 35 35 H 1.09006 * 109.46846 * 35.36371 * 8 7 5 36 36 H 1.09005 * 109.47546 * 300.00269 * 11 9 7 37 37 H 1.08998 * 109.47287 * 59.99875 * 11 9 7 38 38 H 1.09004 * 109.47293 * 180.02562 * 11 9 7 39 39 H 1.09002 * 109.47287 * 64.99970 * 12 9 7 40 40 H 1.08997 * 109.47243 * 185.00151 * 12 9 7 41 41 H 0.96999 * 120.00051 * 359.97438 * 13 12 9 42 42 H 1.09002 * 109.47043 * 300.00251 * 16 14 13 43 43 H 1.08997 * 109.46843 * 60.00038 * 16 14 13 44 44 H 0.97007 * 119.99967 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5855 -0.0021 5 6 4.8764 1.3813 -0.0050 6 8 4.8245 2.5910 0.1034 7 7 6.0693 0.7663 -0.1280 8 6 6.1276 -0.6763 -0.3766 9 6 7.3079 1.5404 -0.0129 10 1 7.0662 2.5872 0.1709 11 6 8.1063 1.4213 -1.3125 12 6 8.1419 0.9984 1.1496 13 7 7.3353 1.0015 2.3725 14 6 7.8666 0.5639 3.5313 15 8 9.0122 0.1672 3.5616 16 6 7.0369 0.5677 4.7895 17 16 8.0241 -0.0723 6.1649 18 6 6.8431 0.0403 7.4676 19 1 5.8524 0.4208 7.2669 20 6 7.1854 -0.3609 8.7515 21 7 6.3033 -0.2763 9.7247 22 14 8.8986 -1.0197 9.0984 23 1 9.7933 0.1031 9.4782 24 1 8.8358 -2.0007 10.2114 25 1 9.4289 -1.6852 7.8814 26 7 3.5420 -0.7296 0.0048 27 7 2.3081 -1.0870 0.0061 28 1 1.9966 -2.0057 0.0105 29 1 -0.3633 0.0053 1.0277 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 2.0056 2.1260 -0.0005 33 1 6.0607 -1.2113 0.5707 34 1 7.0692 -0.9227 -0.8673 35 1 5.2962 -0.9683 -1.0182 36 1 8.3479 0.3743 -1.4960 37 1 7.5121 1.8074 -2.1407 38 1 9.0280 1.9969 -1.2268 39 1 8.4583 -0.0204 0.9257 40 1 9.0198 1.6285 1.2918 41 1 6.4191 1.3192 2.3484 42 1 6.7205 1.5865 5.0129 43 1 6.1591 -0.0626 4.6476 44 1 6.5427 -0.5564 10.6220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701170189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -19.762622 kcal Electronic energy + Delta-G solvation = -27030.934192 eV Core-core repulsion = 23110.494395 eV Total energy + Delta-G solvation = -3920.439797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.70131 -41.24809 -40.35912 -37.76898 -35.40241 -34.69993 -33.89172 -33.16064 -32.28008 -30.94563 -28.06677 -27.92540 -27.82038 -26.88401 -25.47113 -22.24665 -22.02623 -21.81835 -20.18260 -19.80147 -18.85472 -17.97962 -17.81564 -17.65153 -17.14519 -17.08260 -16.89197 -16.53022 -15.96402 -15.75866 -15.04816 -15.01994 -14.83675 -14.81087 -14.39200 -14.16731 -14.04010 -13.89630 -13.75342 -13.52457 -13.38189 -13.34383 -13.12600 -13.01796 -12.91637 -12.90133 -12.62271 -12.01155 -11.87774 -11.68834 -11.23855 -11.19226 -11.08879 -10.59232 -10.45083 -10.21145 -9.92589 -9.77198 -9.03063 -8.53755 -6.25465 0.46819 0.94508 1.10325 1.30721 1.44501 1.49511 1.53182 1.70237 2.08908 2.20531 2.24875 2.26534 2.67675 2.84263 3.27213 3.58611 3.75144 3.80631 3.96138 4.06664 4.13138 4.20559 4.24049 4.38441 4.42563 4.58236 4.60374 4.65158 4.70111 4.78748 4.81280 4.92938 5.02846 5.04732 5.11116 5.23734 5.31712 5.36018 5.52323 5.68088 6.07234 6.08380 6.23693 6.30457 6.79466 6.90658 7.04256 7.07645 8.59016 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.002911 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.820269 B = 9616.461752 C =11492.506012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 C -0.207 4.207 4 C -0.037 4.037 5 C 0.597 3.403 6 O -0.566 6.566 7 N -0.594 5.594 8 C 0.083 3.917 9 C 0.129 3.871 10 H 0.097 0.903 11 C -0.150 4.150 12 C 0.112 3.888 13 N -0.713 5.713 14 C 0.539 3.461 15 O -0.555 6.555 16 C -0.114 4.114 17 S -0.162 6.162 18 C -0.534 4.534 19 H 0.058 0.942 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.917 3.083 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.235 1.235 26 N -0.258 5.258 27 N -0.369 5.369 28 H 0.460 0.540 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.404 0.596 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -1.695 -29.269 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.235 4.235 4 C -0.196 4.196 5 C 0.384 3.616 6 O -0.444 6.444 7 N -0.326 5.326 8 C -0.059 4.059 9 C 0.026 3.974 10 H 0.115 0.885 11 C -0.208 4.208 12 C -0.012 4.012 13 N -0.365 5.365 14 C 0.324 3.676 15 O -0.433 6.433 16 C -0.265 4.265 17 S 0.064 5.936 18 C -0.682 4.682 19 H 0.076 0.924 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.181 1.181 25 H -0.159 1.159 26 N -0.096 5.096 27 N -0.087 5.087 28 H 0.308 0.692 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.178 0.822 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.239 0.761 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.909 -2.671 -29.004 29.935 hybrid contribution -2.081 0.738 0.854 2.367 sum -8.989 -1.933 -28.149 29.613 Atomic orbital electron populations 1.20531 0.83680 1.05596 1.04518 1.21923 0.96940 0.86165 1.04442 1.21710 0.90522 1.00714 1.10584 1.21789 0.95071 0.90491 1.12297 1.17263 0.82478 0.85970 0.75854 1.90777 1.86926 1.14432 1.52249 1.47822 1.04662 1.10346 1.69802 1.22018 1.04167 0.77845 1.01842 1.21438 0.83474 0.96859 0.95662 0.88451 1.22026 1.00390 1.04071 0.94356 1.21902 0.94132 1.02799 0.82358 1.45745 1.17209 1.65738 1.07845 1.19820 0.86732 0.76584 0.84449 1.90678 1.19063 1.47620 1.85945 1.23262 1.02272 1.06048 0.94917 1.84564 1.21937 1.84562 1.02535 1.22469 1.00191 1.49842 0.95652 0.92406 1.25593 1.01489 0.94213 0.94653 1.70018 1.36579 1.46871 1.02014 0.85840 0.79623 0.80111 0.80625 1.18592 1.18080 1.15896 1.73714 1.02452 1.14125 1.19284 1.43558 1.02503 1.10646 1.51947 0.69184 0.89407 0.88601 0.88692 0.82235 0.93192 0.89051 0.89490 0.90492 0.91526 0.89345 0.90515 0.89789 0.76134 0.87585 0.87646 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.44 71.24 0.74 0.33 16 2 C 0.03 0.41 7.23 41.40 0.30 0.71 16 3 C -0.21 -4.03 10.73 22.41 0.24 -3.79 16 4 C -0.04 -0.84 6.75 42.45 0.29 -0.55 16 5 C 0.60 14.84 7.37 86.75 0.64 15.48 16 6 O -0.57 -17.34 16.27 -3.93 -0.06 -17.41 16 7 N -0.59 -11.73 2.24 -826.14 -1.85 -13.59 16 8 C 0.08 1.35 8.43 127.77 1.08 2.42 16 9 C 0.13 2.34 2.79 44.99 0.13 2.47 16 10 H 0.10 2.09 6.91 -2.39 -0.02 2.08 16 11 C -0.15 -1.81 9.18 71.98 0.66 -1.15 16 12 C 0.11 2.44 4.97 86.38 0.43 2.87 16 13 N -0.71 -19.86 5.39 -463.06 -2.49 -22.35 16 14 C 0.54 19.87 7.85 87.66 0.69 20.55 16 15 O -0.55 -24.09 15.86 -3.01 -0.05 -24.14 16 16 C -0.11 -4.68 6.16 71.24 0.44 -4.24 16 17 S -0.16 -8.47 18.55 -56.49 -1.05 -9.51 16 18 C -0.53 -32.03 10.04 67.96 0.68 -31.35 16 19 H 0.06 3.69 8.03 -2.91 -0.02 3.66 16 20 C 0.05 2.75 5.50 84.86 0.47 3.21 16 21 N -0.92 -56.70 13.97 21.65 0.30 -56.40 16 22 Si 0.92 45.49 27.74 68.60 1.90 47.39 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 26 N -0.26 -4.79 9.02 -48.18 -0.43 -5.23 16 27 N -0.37 -4.59 6.83 -47.93 -0.33 -4.91 16 28 H 0.46 2.28 8.96 -219.99 -1.97 0.30 16 29 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.10 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.07 6.44 -2.39 -0.02 1.06 16 35 H 0.09 1.37 5.96 -2.38 -0.01 1.35 16 36 H 0.08 0.75 6.67 -2.38 -0.02 0.73 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 1.64 7.84 -2.39 -0.02 1.62 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.40 10.80 7.87 -92.71 -0.73 10.07 16 42 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 43 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 44 H 0.28 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -81.95 382.57 1.02 -80.93 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -1.69 Total: 18.25 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.78 Total: 6.97 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -4.81 Total: -102.48 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.11 Total: -41.54 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.05 Total: -9.51 kcal Total: -81.95 1.02 -80.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701170189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.168 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds