Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35364 * 126.38705 * 2 1 4 4 C 1.41496 * 105.50611 * 180.13739 * 3 2 1 5 5 C 1.47706 * 126.52091 * 179.84311 * 4 3 2 6 6 O 1.21570 * 120.00132 * 359.71043 * 5 4 3 7 7 N 1.34777 * 120.00119 * 179.70815 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46684 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47756 * 294.99812 * 9 8 7 11 11 C 1.53009 * 109.46984 * 175.00142 * 9 8 7 12 12 N 1.46497 * 109.47333 * 55.00709 * 9 8 7 13 13 C 1.46503 * 120.00269 * 59.99200 * 12 9 8 14 14 C 1.34779 * 119.99806 * 239.99887 * 12 9 8 15 15 O 1.21281 * 120.00104 * 359.97438 * 14 12 9 16 16 C 1.50696 * 120.00013 * 179.97438 * 14 12 9 17 17 S 1.81001 * 109.47295 * 179.97438 * 16 14 12 18 18 C 1.76192 * 100.00186 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00254 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99868 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47166 * 59.99756 * 22 20 18 24 24 H 1.48493 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47193 * 299.99968 * 22 20 18 26 26 N 1.31812 * 106.96025 * 359.57844 * 4 3 2 27 27 N 1.28463 * 110.07501 * 0.26243 * 26 4 3 28 28 H 0.97002 * 124.88427 * 180.02562 * 27 26 4 29 29 H 1.08997 * 109.47494 * 270.35445 * 1 2 3 30 30 H 1.08998 * 109.47170 * 30.35718 * 1 2 3 31 31 H 1.08998 * 109.46906 * 150.35442 * 1 2 3 32 32 H 1.08007 * 127.24605 * 359.97438 * 3 2 1 33 33 H 0.96995 * 120.00018 * 0.27591 * 7 5 4 34 34 H 1.09000 * 109.47212 * 300.00355 * 8 7 5 35 35 H 1.09001 * 109.46577 * 60.00430 * 8 7 5 36 36 H 1.08999 * 109.47112 * 300.00392 * 11 9 8 37 37 H 1.09001 * 109.46642 * 60.00139 * 11 9 8 38 38 H 1.08998 * 109.46901 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.46795 * 90.00379 * 13 12 9 40 40 H 1.09006 * 109.47104 * 210.00389 * 13 12 9 41 41 H 1.09000 * 109.46905 * 330.00404 * 13 12 9 42 42 H 1.09004 * 109.47096 * 299.99371 * 16 14 12 43 43 H 1.09000 * 109.47135 * 59.99652 * 16 14 12 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 -0.0033 5 6 4.8764 1.3811 -0.0078 6 8 4.8213 2.5956 -0.0143 7 7 6.0730 0.7609 -0.0046 8 6 7.3072 1.5503 -0.0097 9 6 8.5140 0.6097 -0.0053 10 1 8.5343 0.0489 0.9291 11 6 9.7996 1.4290 -0.1362 12 7 8.4116 -0.3214 -1.1316 13 6 8.3668 0.1906 -2.5036 14 6 8.3585 -1.6490 -0.9057 15 8 8.3959 -2.0729 0.2300 16 6 8.2526 -2.6068 -2.0643 17 16 8.2025 -4.3052 -1.4405 18 6 8.0825 -5.1864 -2.9615 19 1 8.0603 -4.6479 -3.8974 20 6 8.0164 -6.5729 -2.9570 21 7 8.0440 -7.2294 -1.8164 22 14 7.8884 -7.5072 -4.5695 23 1 9.0747 -7.2072 -5.4109 24 1 7.8335 -8.9652 -4.2938 25 1 6.6557 -7.0916 -5.2858 26 7 3.5420 -0.7296 0.0043 27 7 2.3081 -1.0871 0.0064 28 1 1.9966 -2.0057 0.0120 29 1 -0.3634 0.0064 1.0276 30 1 -0.3633 0.8867 -0.5194 31 1 -0.3633 -0.8931 -0.5083 32 1 2.0057 2.1260 -0.0004 33 1 6.1170 -0.2080 -0.0034 34 1 7.3361 2.1737 -0.9033 35 1 7.3367 2.1840 0.8767 36 1 9.7794 1.9899 -1.0706 37 1 9.8758 2.1218 0.7018 38 1 10.6593 0.7590 -0.1336 39 1 9.3808 0.2677 -2.8959 40 1 7.7869 -0.4903 -3.1267 41 1 7.8993 1.1752 -2.5088 42 1 7.3417 -2.3987 -2.6257 43 1 9.1173 -2.4850 -2.7166 44 1 7.9982 -8.1983 -1.8133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701174808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -0.304096 kcal Electronic energy + Delta-G solvation = -27071.535864 eV Core-core repulsion = 23151.939852 eV Total energy + Delta-G solvation = -3919.596012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.82398 -40.07713 -39.05565 -36.47229 -34.23786 -33.01745 -32.44587 -32.23056 -31.71650 -28.73797 -27.47431 -26.84804 -26.67643 -25.50106 -23.67076 -21.65967 -21.39840 -20.07876 -19.06661 -17.85629 -17.74113 -17.09040 -16.94325 -16.15787 -16.06345 -15.53811 -15.36776 -14.84039 -14.80102 -14.14667 -14.09605 -14.05861 -13.44236 -13.40310 -13.32476 -13.14450 -13.07069 -12.88881 -12.60953 -12.52517 -12.36780 -12.18455 -12.04724 -11.77291 -11.10705 -11.06001 -11.04219 -10.96048 -10.78087 -10.24304 -9.83093 -9.59021 -9.39958 -9.14461 -9.09587 -9.07586 -8.60055 -8.24344 -6.51158 -6.23293 -3.93504 1.47491 1.90682 2.65658 2.86080 2.99947 3.14281 3.21333 3.24534 3.27278 3.36567 3.59057 4.18785 4.29995 4.42995 4.53044 4.71285 4.85591 5.06110 5.07062 5.11785 5.12091 5.12581 5.21391 5.37753 5.39107 5.43661 5.46983 5.53347 5.54471 5.58881 5.69687 5.73875 5.87984 5.93988 6.02335 6.12863 6.18834 6.32430 6.62744 6.80322 7.38932 7.48001 7.57667 7.75131 8.14285 8.33254 8.50601 9.21971 10.83984 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008635 B = 0.003422 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.926475 B = 8180.271342 C =10706.895841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.010 3.990 3 C -0.180 4.180 4 C -0.018 4.018 5 C 0.606 3.394 6 O -0.540 6.540 7 N -0.711 5.711 8 C 0.111 3.889 9 C 0.123 3.877 10 H 0.110 0.890 11 C -0.156 4.156 12 N -0.619 5.619 13 C 0.079 3.921 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.917 3.083 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.245 5.245 27 N -0.376 5.376 28 H 0.447 0.553 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.413 0.587 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 18.391 1.747 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.178 4.178 5 C 0.391 3.609 6 O -0.415 6.415 7 N -0.363 5.363 8 C -0.014 4.014 9 C 0.019 3.981 10 H 0.128 0.872 11 C -0.214 4.214 12 N -0.356 5.356 13 C -0.065 4.065 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 N -0.081 5.081 27 N -0.091 5.091 28 H 0.292 0.708 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.179 0.821 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.976 17.541 3.525 20.017 hybrid contribution -0.709 -0.397 -2.516 2.644 sum -9.684 17.143 1.009 19.716 Atomic orbital electron populations 1.20352 0.86501 1.04034 1.03408 1.21491 0.95476 0.87186 1.07432 1.21475 0.90370 0.99647 1.09266 1.21886 0.95112 0.89900 1.10940 1.16859 0.81683 0.86288 0.76088 1.90771 1.86995 1.12851 1.50929 1.45807 1.04864 1.11505 1.74128 1.21793 0.82777 0.93891 1.02938 1.21297 0.93841 0.90732 0.92273 0.87219 1.22038 0.96747 1.00109 1.02529 1.47942 1.75242 1.05669 1.06763 1.21748 1.01828 1.00294 0.82581 1.20396 0.74969 0.81730 0.90758 1.90703 1.48006 1.76667 1.23521 1.23558 1.04669 1.02352 0.99479 1.85371 1.96240 0.89982 1.11624 1.22825 1.58670 0.93909 0.92998 0.91050 1.24975 0.94572 0.96559 0.97370 1.70008 1.46767 1.08338 1.25175 0.86247 0.78828 0.78385 0.82185 1.19921 1.20805 1.19982 1.73700 1.01646 1.14822 1.17961 1.43392 1.02870 1.09814 1.53019 0.70785 0.90252 0.89529 0.90956 0.82102 0.75105 0.90922 0.90155 0.92032 0.91178 0.91424 0.92565 0.90676 0.91296 0.89284 0.89269 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.44 36.01 0.38 -0.05 16 2 C 0.01 0.09 7.23 -82.21 -0.59 -0.51 16 3 C -0.18 -2.07 10.73 -39.37 -0.42 -2.49 16 4 C -0.02 -0.25 7.13 -82.77 -0.59 -0.84 16 5 C 0.61 8.96 7.82 -12.39 -0.10 8.86 16 6 O -0.54 -8.91 16.93 5.30 0.09 -8.82 16 7 N -0.71 -9.66 5.39 -61.29 -0.33 -9.99 16 8 C 0.11 1.24 4.92 -4.04 -0.02 1.22 16 9 C 0.12 1.43 2.80 -67.93 -0.19 1.24 16 10 H 0.11 1.51 6.90 -51.93 -0.36 1.15 16 11 C -0.16 -1.40 9.19 37.16 0.34 -1.06 16 12 N -0.62 -8.34 2.24 -173.93 -0.39 -8.73 16 13 C 0.08 0.84 9.30 59.85 0.56 1.39 16 14 C 0.53 9.74 7.39 -10.99 -0.08 9.66 16 15 O -0.51 -11.23 15.19 5.56 0.08 -11.15 16 16 C -0.15 -3.00 4.71 36.00 0.17 -2.83 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 22 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 N -0.24 -3.41 11.92 33.42 0.40 -3.01 16 27 N -0.38 -3.89 6.83 33.50 0.23 -3.66 16 28 H 0.45 3.27 8.96 -190.44 -1.71 1.57 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.41 6.20 7.59 -40.82 -0.31 5.89 16 34 H 0.07 0.77 6.88 -51.93 -0.36 0.41 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.83 6.44 -51.93 -0.33 0.50 16 41 H 0.07 0.62 6.53 -51.93 -0.34 0.28 16 42 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 43 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -36.78 387.46 -8.47 -45.25 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.54 Total: 5.24 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.35 Total: 1.80 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.64 Total: -50.56 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.17 Total: -19.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.78 -8.47 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701174808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.946 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds