Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35364 * 126.38705 * 2 1 4 4 C 1.41496 * 105.50611 * 180.13739 * 3 2 1 5 5 C 1.47706 * 126.52091 * 179.84311 * 4 3 2 6 6 O 1.21570 * 120.00132 * 359.71043 * 5 4 3 7 7 N 1.34777 * 120.00119 * 179.70815 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46684 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47756 * 294.99812 * 9 8 7 11 11 C 1.53009 * 109.46984 * 175.00142 * 9 8 7 12 12 N 1.46497 * 109.47333 * 55.00709 * 9 8 7 13 13 C 1.46503 * 120.00269 * 59.99200 * 12 9 8 14 14 C 1.34779 * 119.99806 * 239.99887 * 12 9 8 15 15 O 1.21281 * 120.00104 * 359.97438 * 14 12 9 16 16 C 1.50696 * 120.00013 * 179.97438 * 14 12 9 17 17 S 1.81001 * 109.47295 * 179.97438 * 16 14 12 18 18 C 1.76192 * 100.00186 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00254 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00073 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99868 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99932 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47166 * 59.99756 * 22 20 18 24 24 H 1.48493 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47193 * 299.99968 * 22 20 18 26 26 N 1.31812 * 106.96025 * 359.57844 * 4 3 2 27 27 N 1.28463 * 110.07501 * 0.26243 * 26 4 3 28 28 H 0.97002 * 124.88427 * 180.02562 * 27 26 4 29 29 H 1.08997 * 109.47494 * 270.35445 * 1 2 3 30 30 H 1.08998 * 109.47170 * 30.35718 * 1 2 3 31 31 H 1.08998 * 109.46906 * 150.35442 * 1 2 3 32 32 H 1.08007 * 127.24605 * 359.97438 * 3 2 1 33 33 H 0.96995 * 120.00018 * 0.27591 * 7 5 4 34 34 H 1.09000 * 109.47212 * 300.00355 * 8 7 5 35 35 H 1.09001 * 109.46577 * 60.00430 * 8 7 5 36 36 H 1.08999 * 109.47112 * 300.00392 * 11 9 8 37 37 H 1.09001 * 109.46642 * 60.00139 * 11 9 8 38 38 H 1.08998 * 109.46901 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.46795 * 90.00379 * 13 12 9 40 40 H 1.09006 * 109.47104 * 210.00389 * 13 12 9 41 41 H 1.09000 * 109.46905 * 330.00404 * 13 12 9 42 42 H 1.09004 * 109.47096 * 299.99371 * 16 14 12 43 43 H 1.09000 * 109.47135 * 59.99652 * 16 14 12 44 44 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 -0.0033 5 6 4.8764 1.3811 -0.0078 6 8 4.8213 2.5956 -0.0143 7 7 6.0730 0.7609 -0.0046 8 6 7.3072 1.5503 -0.0097 9 6 8.5140 0.6097 -0.0053 10 1 8.5343 0.0489 0.9291 11 6 9.7996 1.4290 -0.1362 12 7 8.4116 -0.3214 -1.1316 13 6 8.3668 0.1906 -2.5036 14 6 8.3585 -1.6490 -0.9057 15 8 8.3959 -2.0729 0.2300 16 6 8.2526 -2.6068 -2.0643 17 16 8.2025 -4.3052 -1.4405 18 6 8.0825 -5.1864 -2.9615 19 1 8.0603 -4.6479 -3.8974 20 6 8.0164 -6.5729 -2.9570 21 7 8.0440 -7.2294 -1.8164 22 14 7.8884 -7.5072 -4.5695 23 1 9.0747 -7.2072 -5.4109 24 1 7.8335 -8.9652 -4.2938 25 1 6.6557 -7.0916 -5.2858 26 7 3.5420 -0.7296 0.0043 27 7 2.3081 -1.0871 0.0064 28 1 1.9966 -2.0057 0.0120 29 1 -0.3634 0.0064 1.0276 30 1 -0.3633 0.8867 -0.5194 31 1 -0.3633 -0.8931 -0.5083 32 1 2.0057 2.1260 -0.0004 33 1 6.1170 -0.2080 -0.0034 34 1 7.3361 2.1737 -0.9033 35 1 7.3367 2.1840 0.8767 36 1 9.7794 1.9899 -1.0706 37 1 9.8758 2.1218 0.7018 38 1 10.6593 0.7590 -0.1336 39 1 9.3808 0.2677 -2.8959 40 1 7.7869 -0.4903 -3.1267 41 1 7.8993 1.1752 -2.5088 42 1 7.3417 -2.3987 -2.6257 43 1 9.1173 -2.4850 -2.7166 44 1 7.9982 -8.1983 -1.8133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701174808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -27.438635 kcal Electronic energy + Delta-G solvation = -27072.712506 eV Core-core repulsion = 23151.939852 eV Total energy + Delta-G solvation = -3920.772654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.70357 -41.29543 -40.27001 -37.70896 -35.38257 -34.58664 -33.80516 -33.18824 -32.68975 -30.21336 -28.17004 -27.85174 -27.65649 -27.53829 -24.64797 -22.81437 -22.24223 -21.14992 -20.33039 -19.59013 -18.68441 -18.33722 -18.09295 -17.26306 -17.02140 -16.88310 -16.75078 -16.62268 -16.15070 -15.66985 -15.21423 -14.81464 -14.61874 -14.54907 -14.52257 -14.09751 -13.92598 -13.84597 -13.68509 -13.46709 -13.29272 -13.16684 -13.11053 -13.04556 -12.88588 -12.81111 -12.61163 -11.99873 -11.86960 -11.72603 -11.37242 -11.13299 -10.88612 -10.55650 -10.26783 -10.14361 -9.95638 -9.75176 -8.65990 -8.34678 -6.12234 0.45847 1.09993 1.24750 1.42551 1.44474 1.54098 1.55507 1.82517 2.04561 2.23137 2.27413 2.29869 2.99226 3.26070 3.36608 3.55668 3.76165 3.80768 4.03587 4.07426 4.14195 4.23872 4.26576 4.42172 4.46695 4.56645 4.58161 4.65145 4.70943 4.78120 4.78969 4.91103 5.01212 5.03802 5.10048 5.20795 5.31197 5.36781 5.40983 5.56532 6.06752 6.18874 6.22674 6.29936 6.80512 7.04526 7.06481 7.12011 8.74126 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008635 B = 0.003422 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.926475 B = 8180.271342 C =10706.895841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.031 3.969 3 C -0.201 4.201 4 C -0.042 4.042 5 C 0.604 3.396 6 O -0.562 6.562 7 N -0.711 5.711 8 C 0.113 3.887 9 C 0.125 3.875 10 H 0.085 0.915 11 C -0.148 4.148 12 N -0.604 5.604 13 C 0.070 3.930 14 C 0.534 3.466 15 O -0.560 6.560 16 C -0.124 4.124 17 S -0.144 6.144 18 C -0.548 4.548 19 H 0.080 0.920 20 C 0.016 3.984 21 N -0.910 5.910 22 Si 0.995 3.005 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.263 1.263 26 N -0.282 5.282 27 N -0.370 5.370 28 H 0.458 0.542 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.405 0.595 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 19.877 -0.241 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.229 4.229 4 C -0.202 4.202 5 C 0.389 3.611 6 O -0.440 6.440 7 N -0.361 5.361 8 C -0.011 4.011 9 C 0.021 3.979 10 H 0.103 0.897 11 C -0.206 4.206 12 N -0.339 5.339 13 C -0.072 4.072 14 C 0.322 3.678 15 O -0.438 6.438 16 C -0.276 4.276 17 S 0.083 5.917 18 C -0.696 4.696 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.817 3.183 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.187 1.187 26 N -0.119 5.119 27 N -0.087 5.087 28 H 0.306 0.694 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.188 0.812 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.879 19.072 1.515 21.532 hybrid contribution -0.476 -0.741 -1.864 2.062 sum -10.355 18.330 -0.349 21.056 Atomic orbital electron populations 1.20550 0.83089 1.05604 1.04851 1.22095 0.97191 0.85899 1.04312 1.21735 0.89789 1.00867 1.10519 1.21995 0.95775 0.90232 1.12150 1.17037 0.82219 0.86131 0.75682 1.90740 1.87376 1.13582 1.52319 1.45904 1.05460 1.11151 1.73598 1.21925 0.81466 0.93578 1.04136 1.21415 0.95687 0.90320 0.90464 0.89729 1.22002 0.94233 0.99830 1.04547 1.47896 1.73057 1.04140 1.08761 1.22032 1.03429 1.01155 0.80557 1.20094 0.75187 0.83168 0.89394 1.90689 1.50563 1.77778 1.24779 1.23372 1.05997 0.97998 1.00183 1.85525 1.96543 0.95819 1.13799 1.23163 1.58663 0.94608 0.93159 0.90165 1.26080 0.93780 0.97581 1.01429 1.70173 1.47870 1.08694 1.27900 0.85049 0.79458 0.76699 0.77083 1.18722 1.20317 1.18713 1.73629 1.03545 1.15058 1.19684 1.43504 1.02223 1.10877 1.52087 0.69446 0.88707 0.88158 0.89177 0.81194 0.76025 0.89385 0.89172 0.89995 0.89159 0.92500 0.90407 0.91039 0.89033 0.87949 0.87642 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.44 71.24 0.74 0.14 16 2 C 0.03 0.54 7.23 41.40 0.30 0.84 16 3 C -0.20 -4.55 10.73 22.41 0.24 -4.31 16 4 C -0.04 -1.19 7.13 42.45 0.30 -0.89 16 5 C 0.60 18.02 7.82 86.75 0.68 18.70 16 6 O -0.56 -18.49 16.93 -3.94 -0.07 -18.56 16 7 N -0.71 -19.39 5.39 -466.09 -2.51 -21.90 16 8 C 0.11 2.39 4.92 86.38 0.42 2.82 16 9 C 0.12 2.79 2.80 44.99 0.13 2.91 16 10 H 0.08 2.38 6.90 -2.39 -0.02 2.37 16 11 C -0.15 -2.31 9.19 71.99 0.66 -1.65 16 12 N -0.60 -15.66 2.24 -822.57 -1.84 -17.51 16 13 C 0.07 1.31 9.30 127.77 1.19 2.50 16 14 C 0.53 19.72 7.39 87.66 0.65 20.37 16 15 O -0.56 -25.48 15.19 -3.03 -0.05 -25.53 16 16 C -0.12 -4.99 4.71 71.23 0.34 -4.66 16 17 S -0.14 -7.97 20.57 -56.49 -1.16 -9.13 16 18 C -0.55 -31.21 9.50 67.96 0.65 -30.57 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.02 0.92 5.49 84.86 0.47 1.39 16 21 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 22 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 26 N -0.28 -8.03 11.92 -48.18 -0.57 -8.60 16 27 N -0.37 -7.51 6.83 -47.93 -0.33 -7.84 16 28 H 0.46 6.46 8.96 -219.99 -1.97 4.49 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.40 12.55 7.59 -92.71 -0.70 11.85 16 34 H 0.09 1.64 6.88 -2.39 -0.02 1.62 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 0.98 7.67 -2.39 -0.02 0.96 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.43 6.44 -2.38 -0.02 1.41 16 41 H 0.09 1.35 6.53 -2.39 -0.02 1.33 16 42 H 0.10 3.81 7.40 -2.39 -0.02 3.79 16 43 H 0.11 3.86 8.11 -2.40 -0.02 3.84 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -83.46 387.46 0.92 -82.54 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -1.63 Total: 28.90 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.76 Total: 7.59 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.97 Total: -111.10 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.11 Total: -44.08 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -83.46 0.92 -82.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701174808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.101 kcal (2) G-P(sol) polarization free energy of solvation -83.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds