Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 126.03842 * 2 1 4 4 N 1.30838 * 108.20312 * 180.02562 * 3 2 1 5 5 N 1.40088 * 108.20068 * 359.77854 * 4 3 2 6 6 C 1.46503 * 126.03204 * 180.22797 * 5 4 3 7 7 C 1.53000 * 109.47420 * 305.15988 * 6 5 4 8 8 C 1.50706 * 109.46865 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00008 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99522 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99475 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47129 * 179.97438 * 11 10 8 13 13 N 1.46494 * 109.47340 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99918 * 179.97438 * 13 12 11 15 15 O 1.21276 * 120.00237 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99960 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47031 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99875 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99721 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99503 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00340 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47449 * 89.99564 * 22 20 18 24 24 H 1.48497 * 109.47313 * 209.99578 * 22 20 18 25 25 H 1.48506 * 109.47137 * 329.99805 * 22 20 18 26 26 C 1.34940 * 107.93023 * 0.36844 * 5 4 3 27 27 H 1.08999 * 109.46941 * 269.97134 * 1 2 3 28 28 H 1.08991 * 109.47234 * 29.97396 * 1 2 3 29 29 H 1.09002 * 109.46951 * 149.98010 * 1 2 3 30 30 H 1.08001 * 125.89521 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46694 * 65.16147 * 6 5 4 32 32 H 1.08999 * 109.47197 * 185.15258 * 6 5 4 33 33 H 1.08996 * 109.47042 * 299.99805 * 7 6 5 34 34 H 1.09000 * 109.47085 * 59.99765 * 7 6 5 35 35 H 0.96993 * 120.00261 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47210 * 299.98875 * 11 10 8 37 37 H 1.09000 * 109.47646 * 59.99787 * 11 10 8 38 38 H 1.09000 * 109.46447 * 299.99980 * 12 11 10 39 39 H 1.09000 * 109.47014 * 59.99420 * 12 11 10 40 40 H 0.96993 * 120.00054 * 359.97438 * 13 12 11 41 41 H 1.08996 * 109.47254 * 300.00309 * 16 14 13 42 42 H 1.09000 * 109.47133 * 60.00429 * 16 14 13 43 43 H 0.97006 * 119.99382 * 180.02562 * 21 20 18 44 44 H 1.08002 * 126.13053 * 179.90865 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5844 -0.6705 0.0042 6 6 4.7746 -1.5247 0.0100 7 6 5.6762 -1.1513 -1.1684 8 6 6.9002 -2.0305 -1.1626 9 8 7.0380 -2.8724 -0.3007 10 7 7.8421 -1.8803 -2.1149 11 6 9.0317 -2.7353 -2.1096 12 6 9.9334 -2.3618 -3.2880 13 7 11.1233 -3.2164 -3.2824 14 6 12.0647 -3.0669 -4.2351 15 8 11.9272 -2.2246 -5.0968 16 6 13.2891 -3.9456 -4.2291 17 16 14.3557 -3.5038 -5.6232 18 6 15.6693 -4.6526 -5.3794 19 1 15.6350 -5.3442 -4.5506 20 6 16.7477 -4.6692 -6.2530 21 7 17.7292 -5.5271 -6.0706 22 14 16.8067 -3.4735 -7.6869 23 1 17.4887 -2.2245 -7.2621 24 1 17.5549 -4.0875 -8.8131 25 1 15.4235 -3.1576 -8.1253 26 6 2.3032 -1.0942 -0.0006 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9950 2.1578 -0.0004 31 1 5.3192 -1.3826 0.9435 32 1 4.4732 -2.5684 -0.0795 33 1 5.1316 -1.2934 -2.1018 34 1 5.9775 -0.1076 -1.0788 35 1 7.7320 -1.2067 -2.8040 36 1 9.5764 -2.5943 -1.1761 37 1 8.7297 -3.7787 -2.2002 38 1 9.3885 -2.5030 -4.2214 39 1 10.2354 -1.3184 -3.1979 40 1 11.2335 -3.8898 -2.5931 41 1 13.8339 -3.8033 -3.2959 42 1 12.9876 -4.9893 -4.3183 43 1 18.4831 -5.5385 -6.6810 44 1 1.9724 -2.1223 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703107634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -5.080307 kcal Electronic energy + Delta-G solvation = -24567.331387 eV Core-core repulsion = 20647.528263 eV Total energy + Delta-G solvation = -3919.803124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66844 -40.29990 -39.35838 -36.26435 -34.99591 -34.15793 -32.46888 -32.21916 -31.25416 -30.28647 -28.31047 -26.83489 -25.64747 -24.79528 -22.95556 -21.50729 -21.05638 -20.59668 -20.37766 -18.19019 -17.87388 -16.91268 -16.75649 -16.59017 -16.14662 -15.82684 -15.73401 -15.32754 -14.98294 -14.82626 -14.61994 -14.12849 -13.93894 -13.77689 -13.69284 -13.38790 -13.34383 -13.25199 -12.82780 -12.65353 -12.55353 -12.36652 -12.18130 -11.96121 -11.82448 -11.30156 -11.03594 -10.96777 -10.66926 -10.52618 -9.90201 -9.88188 -9.66457 -9.65167 -9.17022 -9.02678 -8.77626 -8.54868 -6.96073 -6.31798 -4.04218 1.42632 1.92227 2.06929 2.35584 2.43512 2.83196 2.85608 3.29929 3.34897 3.47585 3.63289 3.93865 4.08174 4.23535 4.30230 4.32788 4.43678 4.53748 4.67860 4.69063 4.74451 4.82681 4.93981 5.04091 5.07343 5.07583 5.19323 5.21620 5.27686 5.38859 5.48930 5.56763 5.58578 5.70468 5.71023 5.82341 5.95937 6.22181 6.33283 6.54244 6.87516 7.25279 7.44360 7.62244 7.91244 8.35266 8.38909 9.14254 10.77456 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.045235 B = 0.001263 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.847194 B =22157.219493 C =22552.109474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.244 4.244 3 C 0.049 3.951 4 N -0.295 5.295 5 N -0.373 5.373 6 C 0.151 3.849 7 C -0.153 4.153 8 C 0.522 3.478 9 O -0.539 6.539 10 N -0.724 5.724 11 C 0.108 3.892 12 C 0.111 3.889 13 N -0.735 5.735 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.523 4.523 19 H 0.089 0.911 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.055 3.945 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.182 0.818 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.403 0.597 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.271 0.729 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.841 9.189 13.241 37.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.255 4.255 3 C -0.137 4.137 4 N -0.116 5.116 5 N -0.156 5.156 6 C 0.030 3.970 7 C -0.194 4.194 8 C 0.307 3.693 9 O -0.416 6.416 10 N -0.377 5.377 11 C -0.016 4.016 12 C -0.014 4.014 13 N -0.391 5.391 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.107 0.893 20 C -0.112 4.112 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.091 4.091 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.199 0.801 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.237 0.763 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -32.416 10.166 12.359 36.151 hybrid contribution -0.299 -0.904 0.351 1.015 sum -32.716 9.262 12.711 36.300 Atomic orbital electron populations 1.20052 0.89267 1.02193 1.01565 1.20178 0.97199 0.91870 1.16297 1.23837 0.89936 0.99899 1.00036 1.77333 1.21334 0.88805 1.24153 1.48626 1.05385 1.04761 1.56796 1.21405 0.83313 0.92759 0.99536 1.21881 0.94678 1.01977 1.00833 1.20333 0.83950 0.83927 0.81053 1.90754 1.78405 1.35628 1.36832 1.45771 1.21482 1.39331 1.31115 1.21488 0.85749 0.95325 0.99064 1.21327 0.86397 0.95777 0.97914 1.45757 1.21410 1.39871 1.32020 1.20306 0.83444 0.83879 0.80442 1.90707 1.77492 1.34679 1.36265 1.23278 0.96622 1.02064 1.05532 1.84792 1.21746 1.51254 1.33718 1.22313 1.05380 1.21427 1.17898 0.89333 1.24707 0.94131 0.95132 0.97266 1.69942 1.08887 1.35145 1.37652 0.86738 0.81178 0.81536 0.82412 1.19186 1.19892 1.15946 1.22394 0.84098 1.00196 1.02410 0.92145 0.91838 0.92157 0.80102 0.88705 0.87662 0.88066 0.87095 0.75915 0.90416 0.90444 0.90860 0.90836 0.76290 0.88308 0.88275 0.91904 0.80982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.37 36.01 0.37 0.09 16 2 C -0.24 -1.54 6.10 -105.05 -0.64 -2.18 16 3 C 0.05 0.35 11.96 -17.36 -0.21 0.15 16 4 N -0.30 -2.65 12.42 30.63 0.38 -2.27 16 5 N -0.37 -2.74 3.68 -61.36 -0.23 -2.97 16 6 C 0.15 0.91 5.80 -4.04 -0.02 0.88 16 7 C -0.15 -0.81 5.88 -27.88 -0.16 -0.97 16 8 C 0.52 3.87 7.83 -10.98 -0.09 3.79 16 9 O -0.54 -5.92 15.98 5.56 0.09 -5.83 16 10 N -0.72 -4.49 5.56 -60.29 -0.33 -4.83 16 11 C 0.11 0.79 5.79 -4.04 -0.02 0.77 16 12 C 0.11 1.01 5.79 -4.04 -0.02 0.98 16 13 N -0.73 -8.31 5.56 -60.30 -0.33 -8.64 16 14 C 0.53 8.89 7.85 -10.98 -0.09 8.80 16 15 O -0.52 -10.59 15.86 5.56 0.09 -10.51 16 16 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 17 S -0.14 -3.51 18.55 -107.50 -1.99 -5.51 16 18 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 22 Si 0.86 21.54 27.74 -169.99 -4.71 16.82 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 26 C 0.05 0.33 11.36 -17.23 -0.20 0.14 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.11 0.50 8.03 -51.93 -0.42 0.09 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 1.64 8.47 -40.82 -0.35 1.29 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 41 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -37.67 395.77 -7.55 -45.22 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.60 Total: -0.38 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.64 Total: -1.51 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.26 Total: -44.28 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.18 Total: -16.33 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.67 -7.55 -45.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703107634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.142 kcal (2) G-P(sol) polarization free energy of solvation -37.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds