Wall clock time and date at job start Sat Apr 11 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 126.03842 * 2 1 4 4 N 1.30838 * 108.20312 * 180.02562 * 3 2 1 5 5 N 1.40088 * 108.20068 * 359.77854 * 4 3 2 6 6 C 1.46503 * 126.03204 * 180.22797 * 5 4 3 7 7 C 1.53000 * 109.47420 * 305.15988 * 6 5 4 8 8 C 1.50706 * 109.46865 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00008 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99522 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99475 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47129 * 179.97438 * 11 10 8 13 13 N 1.46494 * 109.47340 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99918 * 179.97438 * 13 12 11 15 15 O 1.21276 * 120.00237 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99960 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47031 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99875 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99721 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.99757 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99503 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00340 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47449 * 89.99564 * 22 20 18 24 24 H 1.48497 * 109.47313 * 209.99578 * 22 20 18 25 25 H 1.48506 * 109.47137 * 329.99805 * 22 20 18 26 26 C 1.34940 * 107.93023 * 0.36844 * 5 4 3 27 27 H 1.08999 * 109.46941 * 269.97134 * 1 2 3 28 28 H 1.08991 * 109.47234 * 29.97396 * 1 2 3 29 29 H 1.09002 * 109.46951 * 149.98010 * 1 2 3 30 30 H 1.08001 * 125.89521 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46694 * 65.16147 * 6 5 4 32 32 H 1.08999 * 109.47197 * 185.15258 * 6 5 4 33 33 H 1.08996 * 109.47042 * 299.99805 * 7 6 5 34 34 H 1.09000 * 109.47085 * 59.99765 * 7 6 5 35 35 H 0.96993 * 120.00261 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47210 * 299.98875 * 11 10 8 37 37 H 1.09000 * 109.47646 * 59.99787 * 11 10 8 38 38 H 1.09000 * 109.46447 * 299.99980 * 12 11 10 39 39 H 1.09000 * 109.47014 * 59.99420 * 12 11 10 40 40 H 0.96993 * 120.00054 * 359.97438 * 13 12 11 41 41 H 1.08996 * 109.47254 * 300.00309 * 16 14 13 42 42 H 1.09000 * 109.47133 * 60.00429 * 16 14 13 43 43 H 0.97006 * 119.99382 * 180.02562 * 21 20 18 44 44 H 1.08002 * 126.13053 * 179.90865 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5844 -0.6705 0.0042 6 6 4.7746 -1.5247 0.0100 7 6 5.6762 -1.1513 -1.1684 8 6 6.9002 -2.0305 -1.1626 9 8 7.0380 -2.8724 -0.3007 10 7 7.8421 -1.8803 -2.1149 11 6 9.0317 -2.7353 -2.1096 12 6 9.9334 -2.3618 -3.2880 13 7 11.1233 -3.2164 -3.2824 14 6 12.0647 -3.0669 -4.2351 15 8 11.9272 -2.2246 -5.0968 16 6 13.2891 -3.9456 -4.2291 17 16 14.3557 -3.5038 -5.6232 18 6 15.6693 -4.6526 -5.3794 19 1 15.6350 -5.3442 -4.5506 20 6 16.7477 -4.6692 -6.2530 21 7 17.7292 -5.5271 -6.0706 22 14 16.8067 -3.4735 -7.6869 23 1 17.4887 -2.2245 -7.2621 24 1 17.5549 -4.0875 -8.8131 25 1 15.4235 -3.1576 -8.1253 26 6 2.3032 -1.0942 -0.0006 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8901 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9950 2.1578 -0.0004 31 1 5.3192 -1.3826 0.9435 32 1 4.4732 -2.5684 -0.0795 33 1 5.1316 -1.2934 -2.1018 34 1 5.9775 -0.1076 -1.0788 35 1 7.7320 -1.2067 -2.8040 36 1 9.5764 -2.5943 -1.1761 37 1 8.7297 -3.7787 -2.2002 38 1 9.3885 -2.5030 -4.2214 39 1 10.2354 -1.3184 -3.1979 40 1 11.2335 -3.8898 -2.5931 41 1 13.8339 -3.8033 -3.2959 42 1 12.9876 -4.9893 -4.3183 43 1 18.4831 -5.5385 -6.6810 44 1 1.9724 -2.1223 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703107634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:13 Heat of formation + Delta-G solvation = -33.698915 kcal Electronic energy + Delta-G solvation = -24568.572383 eV Core-core repulsion = 20647.528263 eV Total energy + Delta-G solvation = -3921.044120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13780 -40.99806 -40.55407 -37.09339 -35.49419 -35.09682 -34.67182 -32.64674 -31.99837 -31.27558 -29.26455 -27.85623 -27.27762 -25.33155 -23.67206 -22.22876 -21.70940 -21.42456 -20.93182 -19.92956 -18.63982 -18.02913 -17.45881 -17.28934 -17.11847 -16.96369 -16.75384 -16.66816 -16.05646 -15.64109 -15.51312 -15.22470 -14.93135 -14.68199 -14.66164 -14.45150 -14.10352 -13.80250 -13.77119 -13.59436 -13.34649 -13.07401 -13.03437 -12.91545 -12.85828 -12.69374 -12.63214 -12.38557 -11.87058 -11.44266 -11.25273 -11.17202 -11.03115 -10.54263 -10.40120 -10.30342 -10.17348 -9.22684 -8.99731 -8.51741 -6.22693 0.94700 0.98025 1.31700 1.40737 1.48074 1.48675 1.52618 1.56108 1.88915 1.91688 2.24747 2.49352 2.73622 2.86866 3.50079 3.54174 3.65899 3.86434 3.89174 3.99050 4.04438 4.12277 4.23907 4.32282 4.37400 4.46840 4.48128 4.55086 4.67058 4.78402 4.80100 4.83997 4.96517 5.02751 5.20229 5.28815 5.34237 5.34868 5.70498 5.78331 6.11535 6.12677 6.34108 6.40902 6.76328 6.93578 7.07294 7.13277 8.60748 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.045235 B = 0.001263 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.847194 B =22157.219493 C =22552.109474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.255 4.255 3 C 0.039 3.961 4 N -0.333 5.333 5 N -0.380 5.380 6 C 0.150 3.850 7 C -0.140 4.140 8 C 0.525 3.475 9 O -0.576 6.576 10 N -0.716 5.716 11 C 0.118 3.882 12 C 0.115 3.885 13 N -0.711 5.711 14 C 0.539 3.461 15 O -0.559 6.559 16 C -0.113 4.113 17 S -0.175 6.175 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.260 1.260 25 H -0.235 1.235 26 C 0.050 3.950 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.199 0.801 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.418 0.582 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.419 0.581 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.971 9.728 13.227 39.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.267 4.267 3 C -0.146 4.146 4 N -0.154 5.154 5 N -0.162 5.162 6 C 0.029 3.971 7 C -0.180 4.180 8 C 0.312 3.688 9 O -0.456 6.456 10 N -0.369 5.369 11 C -0.006 4.006 12 C -0.009 4.009 13 N -0.366 5.366 14 C 0.324 3.676 15 O -0.437 6.437 16 C -0.264 4.264 17 S 0.052 5.948 18 C -0.678 4.678 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.556 5.556 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.159 1.159 26 C -0.096 4.096 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.216 0.784 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.256 0.744 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -34.574 10.702 12.372 38.249 hybrid contribution 0.239 -1.109 0.509 1.244 sum -34.335 9.593 12.882 37.906 Atomic orbital electron populations 1.20080 0.87731 1.02967 1.01999 1.20535 0.98378 0.91638 1.16121 1.24277 0.89779 1.01180 0.99403 1.77270 1.22457 0.89918 1.25774 1.48726 1.06059 1.04402 1.57026 1.21433 0.83208 0.93254 0.99193 1.21770 0.93667 1.01270 1.01297 1.20618 0.84338 0.83473 0.80419 1.90743 1.79224 1.37320 1.38293 1.45695 1.20815 1.39246 1.31165 1.21314 0.85750 0.95563 0.98020 1.21402 0.85480 0.95256 0.98805 1.45495 1.20698 1.39807 1.30615 1.19889 0.83623 0.83078 0.80989 1.90699 1.78384 1.36384 1.38242 1.23279 0.96563 1.03471 1.03093 1.84688 1.21911 1.50509 1.37696 1.22479 1.06806 1.21543 1.16978 0.91948 1.25561 0.93864 0.96699 0.99779 1.70024 1.09736 1.36791 1.39045 0.85869 0.81244 0.79554 0.79718 1.18710 1.18397 1.15928 1.22936 0.83623 1.01547 1.01463 0.91817 0.91252 0.91228 0.78393 0.90037 0.86416 0.86500 0.87076 0.74476 0.90540 0.90261 0.90643 0.90825 0.74387 0.86714 0.86626 0.91376 0.78326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.37 71.24 0.74 0.30 16 2 C -0.26 -2.90 6.10 -20.14 -0.12 -3.02 16 3 C 0.04 0.54 11.96 85.24 1.02 1.56 16 4 N -0.33 -5.81 12.42 -57.02 -0.71 -6.52 16 5 N -0.38 -5.22 3.68 -348.05 -1.28 -6.50 16 6 C 0.15 1.67 5.80 86.38 0.50 2.17 16 7 C -0.14 -1.27 5.88 29.85 0.18 -1.10 16 8 C 0.52 7.00 7.83 87.66 0.69 7.68 16 9 O -0.58 -12.04 15.98 -3.02 -0.05 -12.09 16 10 N -0.72 -7.40 5.56 -463.05 -2.57 -9.98 16 11 C 0.12 1.46 5.79 86.38 0.50 1.96 16 12 C 0.11 1.81 5.79 86.38 0.50 2.31 16 13 N -0.71 -14.31 5.56 -463.07 -2.57 -16.88 16 14 C 0.54 16.97 7.85 87.66 0.69 17.66 16 15 O -0.56 -22.22 15.86 -3.02 -0.05 -22.27 16 16 C -0.11 -4.03 6.16 71.24 0.44 -3.59 16 17 S -0.17 -8.59 18.55 -56.49 -1.05 -9.64 16 18 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 19 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 20 C 0.05 2.69 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.57 13.97 21.65 0.30 -55.27 16 22 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 23 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16 26 C 0.05 0.54 11.36 83.54 0.95 1.48 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16 32 H 0.12 0.97 8.03 -2.39 -0.02 0.95 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.42 2.40 8.47 -92.71 -0.79 1.61 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.42 5.96 8.47 -92.71 -0.79 5.17 16 41 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 42 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.28 15.49 8.31 -92.70 -0.77 14.72 16 44 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -81.90 395.77 0.57 -81.33 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -0.58 Total: 10.71 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 7.22 Total: 0.78 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -6.83 Total: -95.15 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.10 Total: -34.36 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -81.90 0.57 -81.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703107634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.630 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds