Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35368 * 127.24656 * 2 1 4 4 N 1.35034 * 107.22815 * 180.02562 * 3 2 1 5 5 C 1.46500 * 124.88545 * 180.02562 * 4 3 2 6 6 N 1.28472 * 110.23192 * 359.71842 * 4 3 2 7 7 C 1.31805 * 110.07062 * 0.46042 * 6 4 3 8 8 C 1.47716 * 126.52040 * 179.81811 * 7 6 4 9 9 O 1.21566 * 120.00487 * 179.41569 * 8 7 6 10 10 N 1.34777 * 119.99741 * 359.68510 * 8 7 6 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46997 * 325.00809 * 11 10 8 13 13 C 1.53007 * 109.46722 * 85.00322 * 11 10 8 14 14 C 1.52994 * 109.47471 * 205.00150 * 11 10 8 15 15 N 1.46497 * 109.46866 * 55.00222 * 14 11 10 16 16 C 1.34783 * 119.99701 * 179.97438 * 15 14 11 17 17 O 1.21274 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.50707 * 119.99754 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47132 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00169 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99459 * 0.02562 * 20 19 18 22 22 C 1.38794 * 120.00050 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99822 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99764 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47305 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46918 * 120.00471 * 24 22 20 27 27 H 1.48497 * 109.47109 * 239.99957 * 24 22 20 28 28 H 1.09007 * 109.47246 * 269.99940 * 1 2 3 29 29 H 1.08994 * 109.47124 * 30.00439 * 1 2 3 30 30 H 1.09005 * 109.46978 * 150.00515 * 1 2 3 31 31 H 1.07991 * 126.38582 * 359.96978 * 3 2 1 32 32 H 1.09000 * 109.47381 * 89.99894 * 5 4 3 33 33 H 1.09005 * 109.47109 * 209.99647 * 5 4 3 34 34 H 1.09000 * 109.47152 * 329.98904 * 5 4 3 35 35 H 0.96999 * 120.00043 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47129 * 300.00089 * 13 11 10 37 37 H 1.08994 * 109.47176 * 60.00197 * 13 11 10 38 38 H 1.09002 * 109.46998 * 180.02562 * 13 11 10 39 39 H 1.09006 * 109.47026 * 175.00069 * 14 11 10 40 40 H 1.09001 * 109.47428 * 295.00357 * 14 11 10 41 41 H 0.96998 * 120.00251 * 359.97438 * 15 14 11 42 42 H 1.08997 * 109.47114 * 299.99963 * 18 16 15 43 43 H 1.09001 * 109.46960 * 60.00069 * 18 16 15 44 44 H 0.97003 * 119.99123 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6153 -0.0006 5 6 4.7937 1.4576 -0.0002 6 7 3.5998 -0.6694 0.0050 7 6 2.3635 -1.1263 -0.0004 8 6 1.9506 -2.5446 -0.0006 9 8 0.7699 -2.8340 0.0048 10 7 2.8829 -3.5179 -0.0011 11 6 2.4734 -4.9245 -0.0007 12 1 1.5639 -5.0379 0.5893 13 6 2.2092 -5.3791 -1.4375 14 6 3.5864 -5.7795 0.6083 15 7 3.9219 -5.2684 1.9396 16 6 4.8820 -5.8695 2.6700 17 8 5.4686 -6.8331 2.2248 18 6 5.2275 -5.3434 4.0393 19 16 6.5442 -6.3550 4.7598 20 6 6.7429 -5.5401 6.3094 21 1 6.1312 -4.6835 6.5513 22 6 7.6848 -5.9997 7.2193 23 7 8.4299 -7.0439 6.9245 24 14 7.8960 -5.1353 8.8618 25 1 6.9458 -3.9973 8.9481 26 1 7.6225 -6.0926 9.9637 27 1 9.2871 -4.6293 8.9797 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 2.0219 2.1137 -0.0005 32 1 5.0912 1.6659 1.0275 33 1 5.6026 0.9387 -0.5146 34 1 4.5792 2.3950 -0.5135 35 1 3.8250 -3.2871 -0.0011 36 1 1.4163 -4.7700 -1.8714 37 1 3.1186 -5.2656 -2.0275 38 1 1.9042 -6.4256 -1.4372 39 1 3.2476 -6.8123 0.6903 40 1 4.4687 -5.7362 -0.0304 41 1 3.4530 -4.4974 2.2955 42 1 5.5670 -4.3109 3.9568 43 1 4.3453 -5.3859 4.6781 44 1 9.0884 -7.3648 7.5604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704008848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -29.096994 kcal Electronic energy + Delta-G solvation = -26391.515412 eV Core-core repulsion = 22470.670846 eV Total energy + Delta-G solvation = -3920.844566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.63241 -41.03100 -40.28653 -37.49446 -34.88931 -34.82933 -34.59280 -33.17284 -32.02542 -30.81250 -29.02699 -27.75636 -27.56475 -26.81257 -24.13930 -22.27360 -21.76710 -21.52607 -21.17087 -19.86886 -18.77069 -17.82782 -17.61383 -17.46442 -17.28477 -16.89785 -16.83503 -16.40543 -15.92618 -15.74858 -15.22310 -14.90352 -14.63618 -14.48666 -14.27727 -14.15970 -14.12521 -13.84975 -13.60215 -13.34003 -13.28660 -13.23019 -13.17274 -13.04042 -12.92922 -12.91644 -12.60320 -12.09577 -11.80576 -11.72064 -11.16858 -11.11758 -11.01554 -10.36095 -10.29435 -10.19029 -10.12248 -9.68083 -8.67578 -8.35966 -6.13812 0.51863 1.15925 1.25206 1.40430 1.45321 1.56756 1.57472 1.60086 2.06627 2.24939 2.28383 2.35143 2.98196 3.30190 3.35444 3.54015 3.88407 3.93074 4.02238 4.04580 4.23167 4.26706 4.36381 4.40914 4.48099 4.48569 4.56464 4.59864 4.69108 4.70419 4.75503 4.91198 4.94934 5.06690 5.21243 5.22610 5.35909 5.40909 5.42008 5.52130 5.90275 6.18927 6.36253 6.40178 6.88756 7.05505 7.13483 7.17366 8.73522 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.002509 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.059243 B =11157.735346 C =12895.871981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.279 5.279 5 C 0.075 3.925 6 N -0.278 5.278 7 C -0.051 4.051 8 C 0.606 3.394 9 O -0.557 6.557 10 N -0.709 5.709 11 C 0.141 3.859 12 H 0.092 0.908 13 C -0.155 4.155 14 C 0.116 3.884 15 N -0.715 5.715 16 C 0.537 3.463 17 O -0.559 6.559 18 C -0.132 4.132 19 S -0.145 6.145 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.999 3.001 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.222 0.778 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.411 0.589 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.410 0.590 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 21.382 -18.167 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.183 4.183 3 C -0.152 4.152 4 N -0.067 5.067 5 C -0.063 4.063 6 N -0.116 5.116 7 C -0.209 4.209 8 C 0.392 3.608 9 O -0.433 6.433 10 N -0.361 5.361 11 C 0.037 3.963 12 H 0.110 0.890 13 C -0.213 4.213 14 C -0.008 4.008 15 N -0.369 5.369 16 C 0.323 3.677 17 O -0.437 6.437 18 C -0.283 4.283 19 S 0.082 5.918 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.821 3.179 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.198 1.198 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.239 0.761 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.247 0.753 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.246 0.754 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.823 19.169 -18.880 29.805 hybrid contribution -0.714 1.803 1.632 2.535 sum -13.537 20.972 -17.248 30.341 Atomic orbital electron populations 1.20119 0.87588 1.03077 1.02294 1.20712 0.98237 0.90830 1.08531 1.23220 0.82871 1.01788 1.07280 1.45762 1.08695 1.03229 1.49009 1.22611 0.83414 0.94374 1.05903 1.73461 1.22895 0.95538 1.19713 1.21853 0.90527 0.94931 1.13633 1.17046 0.85095 0.83257 0.75375 1.90750 1.17784 1.83197 1.51615 1.45952 1.10241 1.05561 1.74324 1.21216 0.97366 0.79139 0.98607 0.88965 1.22063 1.02585 1.02761 0.93920 1.21753 0.98015 0.98444 0.82592 1.45753 1.38785 1.34321 1.18003 1.19973 0.79126 0.82564 0.86053 1.90694 1.52604 1.28149 1.72284 1.23377 1.03860 1.04517 0.96524 1.85516 1.44916 1.42751 1.18575 1.23225 1.25465 1.18229 1.02532 0.90149 1.26122 0.94175 0.95736 1.03090 1.70186 1.22242 1.24725 1.37529 0.84904 0.78489 0.78243 0.76291 1.18197 1.19896 1.19765 0.91667 0.89534 0.92211 0.76121 0.88574 0.88418 0.85129 0.75272 0.92401 0.91309 0.89512 0.89518 0.90620 0.75380 0.87524 0.87610 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 9.92 71.23 0.71 -0.49 16 2 C -0.17 -3.24 6.25 -19.72 -0.12 -3.36 16 3 C -0.01 -0.11 11.40 83.54 0.95 0.85 16 4 N -0.28 -3.89 3.70 -369.45 -1.37 -5.26 16 5 C 0.08 0.35 11.31 127.77 1.44 1.79 16 6 N -0.28 -5.72 11.67 -48.17 -0.56 -6.29 16 7 C -0.05 -1.16 7.13 42.46 0.30 -0.86 16 8 C 0.61 14.66 7.79 86.75 0.68 15.34 16 9 O -0.56 -15.92 14.78 -3.92 -0.06 -15.98 16 10 N -0.71 -14.19 4.51 -445.54 -2.01 -16.21 16 11 C 0.14 2.63 2.74 44.99 0.12 2.75 16 12 H 0.09 1.89 7.57 -2.39 -0.02 1.87 16 13 C -0.15 -2.45 9.48 71.98 0.68 -1.76 16 14 C 0.12 2.51 5.23 86.38 0.45 2.97 16 15 N -0.71 -18.72 5.39 -463.06 -2.50 -21.21 16 16 C 0.54 19.96 7.85 87.66 0.69 20.65 16 17 O -0.56 -25.60 15.86 -3.01 -0.05 -25.64 16 18 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 19 S -0.14 -8.09 20.57 -56.49 -1.16 -9.25 16 20 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 24 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.24 6.72 -2.38 -0.02 1.23 16 31 H 0.22 0.64 8.06 -2.92 -0.02 0.62 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.13 -0.29 8.13 -2.39 -0.02 -0.31 16 35 H 0.41 7.94 8.33 -92.71 -0.77 7.17 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.41 9.24 8.14 -92.71 -0.75 8.48 16 42 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -84.35 393.45 1.58 -82.77 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.49 Total: 23.60 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 7.46 Total: 3.38 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -6.15 Total: -104.70 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.11 Total: -41.62 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -84.35 1.58 -82.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704008848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.675 kcal (2) G-P(sol) polarization free energy of solvation -84.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds