Wall clock time and date at job start Sat Apr 11 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 127.24918 * 2 1 4 4 N 1.35037 * 107.23000 * 179.88118 * 3 2 1 5 5 C 1.46499 * 124.88662 * 180.14926 * 4 3 2 6 6 N 1.28468 * 110.22780 * 0.40722 * 4 3 2 7 7 C 1.31807 * 110.07644 * 359.74710 * 6 4 3 8 8 C 1.47709 * 126.52140 * 180.02562 * 7 6 4 9 9 O 1.21570 * 120.00151 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99866 * 359.95506 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46934 * 35.00082 * 11 10 8 13 13 C 1.53005 * 109.46873 * 275.00162 * 11 10 8 14 14 C 1.52999 * 109.46845 * 155.00500 * 11 10 8 15 15 N 1.46503 * 109.47058 * 304.99682 * 14 11 10 16 16 C 1.34776 * 120.00124 * 180.02562 * 15 14 11 17 17 O 1.21284 * 119.99506 * 0.02562 * 16 15 14 18 18 C 1.50692 * 120.00086 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.47158 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99964 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99684 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99490 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00281 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.46913 * 90.00276 * 24 22 20 26 26 H 1.48501 * 109.47084 * 210.00148 * 24 22 20 27 27 H 1.48501 * 109.46996 * 330.00370 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.67947 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68047 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68028 * 1 2 3 31 31 H 1.08005 * 126.38490 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47503 * 270.26646 * 5 4 3 33 33 H 1.09004 * 109.46887 * 30.26184 * 5 4 3 34 34 H 1.08993 * 109.47239 * 150.26613 * 5 4 3 35 35 H 0.97005 * 119.99733 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47275 * 299.99711 * 13 11 10 37 37 H 1.08996 * 109.47375 * 60.00426 * 13 11 10 38 38 H 1.09000 * 109.46450 * 180.02562 * 13 11 10 39 39 H 1.08991 * 109.47609 * 64.99977 * 14 11 10 40 40 H 1.09000 * 109.46937 * 184.99975 * 14 11 10 41 41 H 0.96997 * 120.00208 * 0.02562 * 15 14 11 42 42 H 1.08994 * 109.47681 * 300.00171 * 18 16 15 43 43 H 1.09000 * 109.46981 * 60.00159 * 18 16 15 44 44 H 0.97009 * 119.99576 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0027 5 6 4.7938 1.4575 0.0067 6 7 3.5998 -0.6695 -0.0043 7 6 2.3635 -1.1264 -0.0063 8 6 1.9505 -2.5446 -0.0133 9 8 0.7697 -2.8339 -0.0141 10 7 2.8828 -3.5179 -0.0193 11 6 2.4732 -4.9245 -0.0256 12 1 1.5627 -5.0351 -0.6145 13 6 2.2117 -5.3860 1.4095 14 6 3.5852 -5.7766 -0.6407 15 7 3.9182 -5.2591 -1.9703 16 6 4.8770 -5.8566 -2.7053 17 8 5.4637 -6.8230 -2.2661 18 6 5.2191 -5.3247 -4.0730 19 16 6.5336 -6.3335 -4.8013 20 6 6.7287 -5.5120 -6.3478 21 1 6.1166 -4.6542 -6.5845 22 6 7.6681 -5.9679 -7.2622 23 7 7.8134 -5.3544 -8.4177 24 14 8.7262 -7.4520 -6.8530 25 1 8.0441 -8.6881 -7.3132 26 1 10.0389 -7.3275 -7.5360 27 1 8.9366 -7.5201 -5.3845 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3633 -0.8871 -0.5188 30 1 -0.3633 0.8929 -0.5089 31 1 2.0220 2.1138 -0.0004 32 1 5.0910 1.6715 -1.0199 33 1 4.5794 2.3920 0.5252 34 1 5.6027 0.9356 0.5178 35 1 3.8250 -3.2870 -0.0186 36 1 3.1222 -5.2754 1.9984 37 1 1.4196 -4.7790 1.8478 38 1 1.9074 -6.4326 1.4047 39 1 4.4685 -5.7364 -0.0035 40 1 3.2462 -6.8089 -0.7271 41 1 3.4487 -4.4865 -2.3216 42 1 4.3356 -5.3649 -4.7101 43 1 5.5582 -4.2924 -3.9870 44 1 8.4698 -5.6733 -9.0569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704008849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:23 Heat of formation + Delta-G solvation = -0.557234 kcal Electronic energy + Delta-G solvation = -26425.038128 eV Core-core repulsion = 22505.431139 eV Total energy + Delta-G solvation = -3919.606989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.99695 -40.02515 -39.07789 -36.50564 -34.24637 -33.76337 -32.45168 -32.42360 -31.18582 -29.50189 -28.50958 -26.92860 -26.01013 -25.52328 -23.43689 -21.52299 -20.87371 -20.43810 -20.36523 -18.20149 -17.74441 -16.79959 -16.71280 -16.60065 -16.35449 -15.80487 -15.12509 -14.99565 -14.94852 -14.43485 -14.05140 -13.91020 -13.74456 -13.61070 -13.47388 -13.09801 -12.96090 -12.95381 -12.84750 -12.79153 -12.68108 -12.37875 -12.21170 -11.90065 -11.31178 -11.25759 -11.09590 -11.00745 -10.60192 -10.24762 -9.86027 -9.62285 -9.55531 -9.36852 -9.04086 -9.03189 -8.97845 -8.49955 -6.91440 -6.28819 -4.00387 1.28194 1.77349 2.08855 2.73729 2.87659 2.98194 3.16965 3.31320 3.34831 3.50509 3.66411 3.96079 4.33250 4.36867 4.39845 4.53082 4.62680 4.73689 4.85593 4.89611 4.91766 4.98109 5.00903 5.10244 5.22725 5.27555 5.34563 5.42830 5.53913 5.60840 5.68023 5.74574 5.78148 5.88620 5.92409 6.02832 6.18010 6.20492 6.41493 6.49082 7.18354 7.58051 7.58438 7.94363 7.97471 8.42031 8.47503 9.17370 10.80477 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.002480 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.320616 B =11287.664315 C =12782.192146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.144 4.144 3 C -0.024 4.024 4 N -0.281 5.281 5 C 0.085 3.915 6 N -0.257 5.257 7 C -0.022 4.022 8 C 0.609 3.391 9 O -0.529 6.529 10 N -0.716 5.716 11 C 0.132 3.868 12 H 0.098 0.902 13 C -0.160 4.160 14 C 0.114 3.886 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.181 0.819 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.401 0.599 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 14.795 21.985 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C -0.167 4.167 4 N -0.069 5.069 5 C -0.055 4.055 6 N -0.094 5.094 7 C -0.182 4.182 8 C 0.394 3.606 9 O -0.403 6.403 10 N -0.369 5.369 11 C 0.027 3.973 12 H 0.116 0.884 13 C -0.219 4.219 14 C -0.011 4.011 15 N -0.392 5.392 16 C 0.318 3.682 17 O -0.394 6.394 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.199 0.801 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.235 0.765 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.048 12.695 22.543 28.132 hybrid contribution -0.532 1.561 -0.839 1.850 sum -11.580 14.256 21.704 28.433 Atomic orbital electron populations 1.20179 0.88011 1.03144 1.02319 1.20386 0.97500 0.90402 1.07168 1.22642 0.83628 1.00632 1.09771 1.45282 1.07220 1.03705 1.50664 1.22227 0.84691 0.93713 1.04849 1.73506 1.23141 0.93952 1.18755 1.21784 0.89603 0.94880 1.11920 1.16853 0.85334 0.82591 0.75818 1.90776 1.16773 1.82679 1.50109 1.45984 1.10351 1.05579 1.74947 1.21285 0.98479 0.79644 0.97884 0.88358 1.22108 1.02590 1.02078 0.95146 1.21629 0.97494 0.98018 0.83964 1.45953 1.40622 1.34774 1.17833 1.20268 0.78594 0.83014 0.86365 1.90703 1.50737 1.26102 1.71813 1.23275 1.04457 1.04463 0.95291 1.84763 1.44346 1.42676 1.19675 1.22321 1.26133 1.18450 0.99944 0.89424 1.24720 0.95967 0.96768 0.93890 1.69947 1.34596 1.40196 1.07029 0.86727 0.80390 0.83064 0.81624 1.19192 1.19962 1.15906 0.91525 0.89863 0.91973 0.80144 0.89362 0.88557 0.88352 0.75543 0.92014 0.91463 0.90974 0.90842 0.89781 0.76507 0.88503 0.88525 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.93 36.01 0.36 -0.31 16 2 C -0.14 -1.42 6.25 -104.40 -0.65 -2.07 16 3 C -0.02 -0.18 11.40 -17.17 -0.20 -0.38 16 4 N -0.28 -2.25 3.70 -68.13 -0.25 -2.50 16 5 C 0.09 0.31 11.31 59.85 0.68 0.99 16 6 N -0.26 -2.73 11.67 33.42 0.39 -2.34 16 7 C -0.02 -0.25 7.13 -82.76 -0.59 -0.84 16 8 C 0.61 7.19 7.79 -12.39 -0.10 7.09 16 9 O -0.53 -7.30 14.78 5.30 0.08 -7.22 16 10 N -0.72 -7.06 4.51 -54.79 -0.25 -7.31 16 11 C 0.13 1.22 2.73 -67.93 -0.19 1.03 16 12 H 0.10 1.00 7.57 -51.93 -0.39 0.60 16 13 C -0.16 -1.29 9.48 37.16 0.35 -0.94 16 14 C 0.11 1.21 5.23 -4.04 -0.02 1.19 16 15 N -0.74 -9.48 5.39 -60.30 -0.32 -9.81 16 16 C 0.53 9.43 7.85 -10.99 -0.09 9.35 16 17 O -0.52 -11.07 15.86 5.55 0.09 -10.99 16 18 C -0.12 -2.44 6.16 36.00 0.22 -2.21 16 19 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 24 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.86 6.72 -51.93 -0.35 0.51 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.08 8.13 -51.93 -0.42 -0.34 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.41 3.90 8.33 -40.82 -0.34 3.56 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.40 4.54 8.14 -40.82 -0.33 4.21 16 42 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 43 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -37.28 390.77 -6.80 -44.08 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.49 Total: 3.76 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 0.00 Total: 0.81 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.34 Total: -47.90 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.28 -6.80 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704008849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.525 kcal (2) G-P(sol) polarization free energy of solvation -37.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds