Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 127.24918 * 2 1 4 4 N 1.35037 * 107.23000 * 179.88118 * 3 2 1 5 5 C 1.46499 * 124.88662 * 180.14926 * 4 3 2 6 6 N 1.28468 * 110.22780 * 0.40722 * 4 3 2 7 7 C 1.31807 * 110.07644 * 359.74710 * 6 4 3 8 8 C 1.47709 * 126.52140 * 180.02562 * 7 6 4 9 9 O 1.21570 * 120.00151 * 179.97438 * 8 7 6 10 10 N 1.34775 * 119.99866 * 359.95506 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46934 * 35.00082 * 11 10 8 13 13 C 1.53005 * 109.46873 * 275.00162 * 11 10 8 14 14 C 1.52999 * 109.46845 * 155.00500 * 11 10 8 15 15 N 1.46503 * 109.47058 * 304.99682 * 14 11 10 16 16 C 1.34776 * 120.00124 * 180.02562 * 15 14 11 17 17 O 1.21284 * 119.99506 * 0.02562 * 16 15 14 18 18 C 1.50692 * 120.00086 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.47158 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99964 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99956 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99684 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99490 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00281 * 359.97438 * 22 20 19 25 25 H 1.48491 * 109.46913 * 90.00276 * 24 22 20 26 26 H 1.48501 * 109.47084 * 210.00148 * 24 22 20 27 27 H 1.48501 * 109.46996 * 330.00370 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.67947 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68047 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68028 * 1 2 3 31 31 H 1.08005 * 126.38490 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47503 * 270.26646 * 5 4 3 33 33 H 1.09004 * 109.46887 * 30.26184 * 5 4 3 34 34 H 1.08993 * 109.47239 * 150.26613 * 5 4 3 35 35 H 0.97005 * 119.99733 * 0.02562 * 10 8 7 36 36 H 1.08993 * 109.47275 * 299.99711 * 13 11 10 37 37 H 1.08996 * 109.47375 * 60.00426 * 13 11 10 38 38 H 1.09000 * 109.46450 * 180.02562 * 13 11 10 39 39 H 1.08991 * 109.47609 * 64.99977 * 14 11 10 40 40 H 1.09000 * 109.46937 * 184.99975 * 14 11 10 41 41 H 0.96997 * 120.00208 * 0.02562 * 15 14 11 42 42 H 1.08994 * 109.47681 * 300.00171 * 18 16 15 43 43 H 1.09000 * 109.46981 * 60.00159 * 18 16 15 44 44 H 0.97009 * 119.99576 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0027 5 6 4.7938 1.4575 0.0067 6 7 3.5998 -0.6695 -0.0043 7 6 2.3635 -1.1264 -0.0063 8 6 1.9505 -2.5446 -0.0133 9 8 0.7697 -2.8339 -0.0141 10 7 2.8828 -3.5179 -0.0193 11 6 2.4732 -4.9245 -0.0256 12 1 1.5627 -5.0351 -0.6145 13 6 2.2117 -5.3860 1.4095 14 6 3.5852 -5.7766 -0.6407 15 7 3.9182 -5.2591 -1.9703 16 6 4.8770 -5.8566 -2.7053 17 8 5.4637 -6.8230 -2.2661 18 6 5.2191 -5.3247 -4.0730 19 16 6.5336 -6.3335 -4.8013 20 6 6.7287 -5.5120 -6.3478 21 1 6.1166 -4.6542 -6.5845 22 6 7.6681 -5.9679 -7.2622 23 7 7.8134 -5.3544 -8.4177 24 14 8.7262 -7.4520 -6.8530 25 1 8.0441 -8.6881 -7.3132 26 1 10.0389 -7.3275 -7.5360 27 1 8.9366 -7.5201 -5.3845 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3633 -0.8871 -0.5188 30 1 -0.3633 0.8929 -0.5089 31 1 2.0220 2.1138 -0.0004 32 1 5.0910 1.6715 -1.0199 33 1 4.5794 2.3920 0.5252 34 1 5.6027 0.9356 0.5178 35 1 3.8250 -3.2870 -0.0186 36 1 3.1222 -5.2754 1.9984 37 1 1.4196 -4.7790 1.8478 38 1 1.9074 -6.4326 1.4047 39 1 4.4685 -5.7364 -0.0035 40 1 3.2462 -6.8089 -0.7271 41 1 3.4487 -4.4865 -2.3216 42 1 4.3356 -5.3649 -4.7101 43 1 5.5582 -4.2924 -3.9870 44 1 8.4698 -5.6733 -9.0569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704008849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = -28.677422 kcal Electronic energy + Delta-G solvation = -26426.257511 eV Core-core repulsion = 22505.431139 eV Total energy + Delta-G solvation = -3920.826372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.63438 -41.05095 -40.31113 -37.50430 -34.91120 -34.83165 -34.67802 -33.17864 -32.04094 -30.87559 -29.02976 -27.91009 -27.57075 -26.86923 -24.14356 -22.27813 -21.80961 -21.53375 -21.17496 -19.92235 -18.77695 -17.87964 -17.63112 -17.48138 -17.28988 -17.11056 -16.83312 -16.43661 -15.88389 -15.67421 -15.26070 -15.01907 -14.84487 -14.58061 -14.29512 -14.18641 -14.11511 -13.85835 -13.65900 -13.36792 -13.34321 -13.31020 -13.24510 -13.04882 -13.01102 -12.93210 -12.64412 -12.08998 -11.86771 -11.80760 -11.18044 -11.12382 -11.06874 -10.55950 -10.36243 -10.21133 -10.12572 -9.68163 -9.00778 -8.52631 -6.23639 0.51661 0.97007 1.15655 1.31449 1.45864 1.52540 1.54508 1.59548 2.05496 2.22448 2.26021 2.34554 2.69917 2.85609 3.35167 3.53423 3.81985 3.88452 4.02013 4.04194 4.18896 4.23990 4.36190 4.40639 4.43971 4.48300 4.56541 4.59467 4.68927 4.70273 4.75147 4.90902 4.95271 5.06568 5.20693 5.22303 5.34576 5.41460 5.51968 5.69499 5.89819 6.10090 6.34394 6.37638 6.88559 6.92271 7.11395 7.13686 8.59985 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012033 B = 0.002480 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.320616 B =11287.664315 C =12782.192146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.279 5.279 5 C 0.075 3.925 6 N -0.278 5.278 7 C -0.052 4.052 8 C 0.606 3.394 9 O -0.557 6.557 10 N -0.709 5.709 11 C 0.140 3.860 12 H 0.092 0.908 13 C -0.155 4.155 14 C 0.116 3.884 15 N -0.714 5.714 16 C 0.539 3.461 17 O -0.556 6.556 18 C -0.114 4.114 19 S -0.168 6.168 20 C -0.530 4.530 21 H 0.060 0.940 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.235 1.235 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.222 0.778 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.410 0.590 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 15.801 23.495 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.183 4.183 3 C -0.152 4.152 4 N -0.067 5.067 5 C -0.063 4.063 6 N -0.116 5.116 7 C -0.210 4.210 8 C 0.392 3.608 9 O -0.433 6.433 10 N -0.361 5.361 11 C 0.036 3.964 12 H 0.110 0.890 13 C -0.213 4.213 14 C -0.007 4.007 15 N -0.368 5.368 16 C 0.324 3.676 17 O -0.434 6.434 18 C -0.265 4.265 19 S 0.058 5.942 20 C -0.678 4.678 21 H 0.078 0.922 22 C -0.161 4.161 23 N -0.556 5.556 24 Si 0.738 3.262 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.159 1.159 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.238 0.762 32 H 0.114 0.886 33 H 0.148 0.852 34 H 0.117 0.883 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.247 0.753 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.999 13.730 24.068 29.812 hybrid contribution -0.636 1.423 -1.247 1.996 sum -11.635 15.152 22.821 29.761 Atomic orbital electron populations 1.20120 0.87599 1.02992 1.02376 1.20712 0.98237 0.90858 1.08518 1.23219 0.82896 1.01795 1.07304 1.45757 1.08681 1.03247 1.49015 1.22609 0.83422 0.94376 1.05896 1.73450 1.22881 0.95519 1.19700 1.21860 0.90510 0.94970 1.13635 1.17036 0.85109 0.83247 0.75375 1.90753 1.17802 1.83197 1.51589 1.45951 1.10228 1.05574 1.74348 1.21231 0.97469 0.79131 0.98602 0.89010 1.22061 1.02595 1.02730 0.93947 1.21769 0.98082 0.98424 0.82460 1.45748 1.38745 1.34171 1.18125 1.19853 0.79253 0.82686 0.85795 1.90695 1.52500 1.27827 1.72418 1.23272 1.02699 1.04006 0.96494 1.84637 1.47439 1.44059 1.18038 1.22466 1.25655 1.17863 1.01820 0.92208 1.25594 0.97219 0.99473 0.93776 1.70026 1.35657 1.41847 1.08070 0.85846 0.79325 0.79624 0.81449 1.18682 1.18273 1.15881 0.91340 0.92333 0.89746 0.76174 0.88617 0.85169 0.88346 0.75238 0.91264 0.92517 0.89458 0.90388 0.89278 0.75347 0.87243 0.87122 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 9.93 71.24 0.71 -0.50 16 2 C -0.17 -3.25 6.25 -19.72 -0.12 -3.38 16 3 C -0.01 -0.11 11.40 83.53 0.95 0.84 16 4 N -0.28 -3.92 3.70 -369.46 -1.37 -5.29 16 5 C 0.08 0.36 11.31 127.77 1.44 1.81 16 6 N -0.28 -5.67 11.67 -48.17 -0.56 -6.24 16 7 C -0.05 -1.16 7.13 42.46 0.30 -0.86 16 8 C 0.61 14.42 7.79 86.75 0.68 15.10 16 9 O -0.56 -15.74 14.78 -3.94 -0.06 -15.80 16 10 N -0.71 -13.61 4.51 -445.54 -2.01 -15.62 16 11 C 0.14 2.44 2.73 44.99 0.12 2.57 16 12 H 0.09 1.79 7.57 -2.39 -0.02 1.77 16 13 C -0.15 -2.28 9.48 71.98 0.68 -1.60 16 14 C 0.12 2.30 5.23 86.38 0.45 2.75 16 15 N -0.71 -17.28 5.39 -463.07 -2.50 -19.78 16 16 C 0.54 18.43 7.85 87.65 0.69 19.12 16 17 O -0.56 -23.18 15.86 -3.04 -0.05 -23.23 16 18 C -0.11 -4.36 6.16 71.23 0.44 -3.92 16 19 S -0.17 -8.52 18.55 -56.49 -1.05 -9.57 16 20 C -0.53 -31.12 10.04 67.95 0.68 -30.44 16 21 H 0.06 3.72 8.03 -2.91 -0.02 3.69 16 22 C 0.04 2.64 5.50 84.86 0.47 3.10 16 23 N -0.92 -56.21 13.97 21.65 0.30 -55.90 16 24 Si 0.92 45.02 27.74 68.60 1.90 46.93 16 25 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.25 6.72 -2.39 -0.02 1.23 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.13 -0.26 8.13 -2.38 -0.02 -0.28 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.41 7.54 8.33 -92.70 -0.77 6.76 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.41 8.67 8.14 -92.71 -0.75 7.91 16 42 H 0.11 3.93 8.14 -2.40 -0.02 3.92 16 43 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -81.91 390.77 1.58 -80.32 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.53 Total: 19.58 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 7.49 Total: 4.58 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -6.13 Total: -102.82 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.11 Total: -39.02 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.93 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.05 Total: -9.57 kcal Total: -81.91 1.58 -80.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704008849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.646 kcal (2) G-P(sol) polarization free energy of solvation -81.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds