Wall clock time and date at job start Sat Apr 11 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39673 * 127.32384 * 2 1 4 4 N 1.30871 * 107.86421 * 180.27870 * 3 2 1 5 5 N 1.28445 * 110.92471 * 359.73334 * 4 3 2 6 6 C 1.46497 * 125.19250 * 180.02562 * 5 4 3 7 7 C 1.36600 * 109.61860 * 0.02562 * 5 4 3 8 8 C 1.47170 * 126.88233 * 179.97438 * 7 5 4 9 9 O 1.21624 * 119.99942 * 90.30605 * 8 7 5 10 10 N 1.34773 * 119.99558 * 270.57921 * 8 7 5 11 11 C 1.46502 * 119.99511 * 184.79320 * 10 8 7 12 12 C 1.53003 * 109.47076 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47167 * 64.99941 * 12 11 10 14 14 C 1.53005 * 109.47095 * 184.99861 * 12 11 10 15 15 N 1.46497 * 109.47355 * 305.00008 * 12 11 10 16 16 C 1.34770 * 120.00571 * 154.99843 * 15 12 11 17 17 O 1.21287 * 119.99826 * 359.97438 * 16 15 12 18 18 C 1.50703 * 120.00572 * 180.02562 * 16 15 12 19 19 S 1.81000 * 109.47058 * 180.02562 * 18 16 15 20 20 C 1.76205 * 99.99875 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99764 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00285 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99798 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00125 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46693 * 89.99874 * 24 22 20 26 26 H 1.48494 * 109.47152 * 209.99990 * 24 22 20 27 27 H 1.48499 * 109.46971 * 330.00155 * 24 22 20 28 28 H 1.09002 * 109.47164 * 270.16504 * 1 2 3 29 29 H 1.09004 * 109.47017 * 30.16417 * 1 2 3 30 30 H 1.08998 * 109.47703 * 150.15718 * 1 2 3 31 31 H 1.07999 * 126.07422 * 0.03330 * 3 2 1 32 32 H 1.08997 * 109.47444 * 274.95522 * 6 5 4 33 33 H 1.09003 * 109.46856 * 34.95150 * 6 5 4 34 34 H 1.09001 * 109.47455 * 154.95379 * 6 5 4 35 35 H 0.96999 * 120.00414 * 4.79101 * 10 8 7 36 36 H 1.08998 * 109.47418 * 300.00013 * 11 10 8 37 37 H 1.09002 * 109.47525 * 60.00394 * 11 10 8 38 38 H 1.09000 * 109.46776 * 180.02562 * 14 12 11 39 39 H 1.08998 * 109.46964 * 299.99824 * 14 12 11 40 40 H 1.08996 * 109.47047 * 60.00007 * 14 12 11 41 41 H 0.97008 * 119.99558 * 334.99808 * 15 12 11 42 42 H 1.08994 * 109.46642 * 300.00219 * 18 16 15 43 43 H 1.08997 * 109.46766 * 60.00088 * 18 16 15 44 44 H 0.96997 * 119.99858 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5877 0.6747 -0.0061 5 7 3.6206 -0.6093 -0.0044 6 6 4.8390 -1.4227 -0.0093 7 6 2.3461 -1.1007 0.0026 8 6 1.9454 -2.5168 0.0061 9 8 1.7798 -3.0994 1.0609 10 7 1.7673 -3.1695 -1.1595 11 6 1.2675 -4.5466 -1.1588 12 6 1.1569 -5.0498 -2.5995 13 1 2.1512 -5.1041 -3.0427 14 6 0.5188 -6.4404 -2.6065 15 7 0.3257 -4.1271 -3.3766 16 6 0.4760 -4.0476 -4.7135 17 8 1.2998 -4.7397 -5.2734 18 6 -0.3787 -3.0980 -5.5128 19 16 0.0572 -3.2231 -7.2651 20 6 -1.0602 -2.0416 -7.9434 21 1 -1.7362 -1.5036 -7.2954 22 6 -1.0724 -1.8031 -9.3107 23 7 -0.2488 -2.4592 -10.1006 24 14 -2.2574 -0.5510 -10.0299 25 1 -1.6109 0.7857 -10.0536 26 1 -2.6199 -0.9502 -11.4135 27 1 -3.4836 -0.4930 -9.1942 28 1 -0.3633 0.0030 1.0277 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3634 -0.8913 -0.5114 31 1 2.0452 2.1457 0.0005 32 1 5.1854 -1.5521 -1.0346 33 1 5.6117 -0.9230 0.5749 34 1 4.6265 -2.3982 0.4282 35 1 1.9700 -2.7275 -1.9988 36 1 1.9564 -5.1830 -0.6032 37 1 0.2851 -4.5765 -0.6876 38 1 0.4404 -6.7989 -3.6329 39 1 1.1373 -7.1269 -2.0284 40 1 -0.4755 -6.3860 -2.1633 41 1 -0.3329 -3.5733 -2.9287 42 1 -1.4294 -3.3561 -5.3808 43 1 -0.2089 -2.0782 -5.1677 44 1 -0.2570 -2.2922 -11.0560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704049595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:26 Heat of formation + Delta-G solvation = -0.654722 kcal Electronic energy + Delta-G solvation = -26781.960840 eV Core-core repulsion = 22862.349623 eV Total energy + Delta-G solvation = -3919.611216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.80335 -40.10162 -39.24065 -36.49211 -34.31780 -34.01122 -32.47104 -32.26703 -31.47122 -28.94161 -28.62835 -26.80471 -26.34008 -25.52628 -23.03102 -21.90686 -21.24970 -20.47164 -20.13997 -18.37464 -17.83611 -16.99339 -16.73204 -16.49729 -16.09094 -15.73015 -15.23951 -15.00711 -14.83959 -14.71071 -14.20644 -13.85034 -13.71395 -13.65940 -13.39528 -13.25923 -13.03688 -12.95849 -12.82609 -12.78071 -12.62136 -12.43830 -12.15216 -11.93890 -11.27973 -11.09620 -11.06506 -10.93238 -10.79614 -10.55985 -9.86353 -9.64563 -9.48318 -9.45908 -9.14221 -9.08148 -8.96929 -8.29884 -6.55430 -6.25960 -3.97044 1.35518 1.72050 2.33675 2.40308 2.76947 2.92575 2.97691 3.19738 3.24843 3.28462 3.60830 4.10862 4.16340 4.20699 4.31284 4.69128 4.72294 4.77900 4.82184 4.96483 4.99158 5.05221 5.09555 5.09814 5.22813 5.31611 5.32754 5.43263 5.46516 5.57949 5.70435 5.76851 5.80279 5.82670 5.84284 6.06490 6.08057 6.26839 6.42406 6.46958 6.94108 7.53790 7.56110 7.62966 7.76568 8.30992 8.47149 9.19704 10.81436 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.002753 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.755820 B =10166.895931 C =11724.346214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.153 4.153 3 C 0.006 3.994 4 N -0.281 5.281 5 N -0.272 5.272 6 C 0.086 3.914 7 C -0.038 4.038 8 C 0.596 3.404 9 O -0.522 6.522 10 N -0.714 5.714 11 C 0.111 3.889 12 C 0.132 3.868 13 H 0.096 0.904 14 C -0.161 4.161 15 N -0.738 5.738 16 C 0.534 3.466 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.187 0.813 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.409 0.591 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 0.521 22.724 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.164 4.164 3 C -0.171 4.171 4 N -0.111 5.111 5 N -0.061 5.061 6 C -0.055 4.055 7 C -0.167 4.167 8 C 0.379 3.621 9 O -0.396 6.396 10 N -0.367 5.367 11 C -0.013 4.013 12 C 0.027 3.973 13 H 0.114 0.886 14 C -0.220 4.220 15 N -0.394 5.394 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.204 0.796 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.245 0.755 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.804 -0.870 22.352 23.381 hybrid contribution -2.676 1.843 -0.038 3.249 sum 4.128 0.972 22.314 22.713 Atomic orbital electron populations 1.20147 0.88213 1.02961 1.02379 1.20711 0.96945 0.90633 1.08120 1.23487 0.87638 1.00040 1.05927 1.73163 1.24528 0.93086 1.20339 1.45518 1.05381 1.03776 1.51399 1.22205 0.83908 0.94524 1.04837 1.21249 0.86299 0.94467 1.14635 1.16990 0.77446 0.83643 0.84028 1.90857 1.50503 1.67168 1.31060 1.46025 1.66629 1.15170 1.08858 1.21834 1.00812 0.81901 0.96715 1.21137 0.96777 0.90061 0.89361 0.88617 1.22116 1.00973 0.95221 1.03700 1.46161 1.41628 1.44134 1.07462 1.20354 0.83363 0.82878 0.81399 1.90714 1.34974 1.43313 1.69724 1.23540 1.01979 1.00578 1.04412 1.85392 1.51651 1.55088 0.91150 1.22859 1.23950 1.26420 0.95212 0.90911 1.24989 0.96112 0.96489 0.95943 1.70011 1.35668 1.39785 1.04807 0.86170 0.80435 0.80605 0.78323 1.20233 1.20742 1.19659 0.91142 0.90639 0.91836 0.79596 0.89276 0.88224 0.88940 0.75486 0.89518 0.90306 0.90919 0.91460 0.92091 0.76693 0.89162 0.89222 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.28 36.00 0.37 -0.27 16 2 C -0.15 -1.59 6.30 -104.03 -0.65 -2.24 16 3 C 0.01 0.07 12.00 -17.43 -0.21 -0.14 16 4 N -0.28 -3.24 11.90 30.59 0.36 -2.87 16 5 N -0.27 -2.86 3.75 -63.88 -0.24 -3.10 16 6 C 0.09 0.58 11.22 59.85 0.67 1.26 16 7 C -0.04 -0.42 6.71 -82.05 -0.55 -0.97 16 8 C 0.60 6.39 6.77 -12.64 -0.09 6.31 16 9 O -0.52 -7.12 17.12 5.26 0.09 -7.03 16 10 N -0.71 -6.14 5.38 -61.46 -0.33 -6.47 16 11 C 0.11 0.86 5.24 -4.04 -0.02 0.84 16 12 C 0.13 1.23 2.73 -67.93 -0.19 1.04 16 13 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 14 C -0.16 -1.44 9.48 37.16 0.35 -1.08 16 15 N -0.74 -8.11 4.52 -53.80 -0.24 -8.36 16 16 C 0.53 8.82 7.81 -10.99 -0.09 8.73 16 17 O -0.51 -10.53 15.52 5.55 0.09 -10.45 16 18 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 24 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 8.07 -51.93 -0.42 0.09 16 31 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.57 7.65 -51.93 -0.40 0.17 16 35 H 0.41 3.52 8.13 -40.82 -0.33 3.19 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 43 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -36.67 396.31 -7.29 -43.96 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.51 Total: 2.88 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.02 Total: -1.81 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.28 Total: -45.76 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.67 -7.29 -43.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704049595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.308 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds