Wall clock time and date at job start Sat Apr 11 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35360 * 126.38408 * 2 1 4 4 C 1.41507 * 105.50130 * 180.08882 * 3 2 1 5 5 C 1.47715 * 126.51802 * 179.90206 * 4 3 2 6 6 O 1.21576 * 119.99599 * 359.71552 * 5 4 3 7 7 N 1.34773 * 119.99965 * 179.70982 * 5 4 3 8 8 C 1.46500 * 119.99910 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47297 * 34.99871 * 8 7 5 10 10 C 1.53006 * 109.46998 * 275.00232 * 8 7 5 11 11 C 1.52997 * 109.47007 * 155.00372 * 8 7 5 12 12 C 1.53001 * 109.46997 * 294.99685 * 11 8 7 13 13 N 1.46504 * 109.46748 * 179.97438 * 12 11 8 14 14 C 1.34778 * 119.99455 * 180.02562 * 13 12 11 15 15 O 1.21285 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99746 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47326 * 180.02562 * 16 14 13 18 18 C 1.76193 * 100.00487 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99768 * 0.02562 * 18 17 16 20 20 C 1.38791 * 120.00543 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00496 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99741 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47202 * 90.00195 * 22 20 18 24 24 H 1.48504 * 109.47214 * 209.99966 * 22 20 18 25 25 H 1.48496 * 109.47149 * 330.00103 * 22 20 18 26 26 N 1.31807 * 106.96590 * 359.64278 * 4 3 2 27 27 N 1.28468 * 110.06847 * 0.22176 * 26 4 3 28 28 H 0.97004 * 124.88315 * 179.97438 * 27 26 4 29 29 H 1.08995 * 109.46784 * 270.29156 * 1 2 3 30 30 H 1.08995 * 109.47080 * 30.29554 * 1 2 3 31 31 H 1.09007 * 109.46923 * 150.29481 * 1 2 3 32 32 H 1.07999 * 127.25246 * 359.97438 * 3 2 1 33 33 H 0.96995 * 119.99797 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 35 35 H 1.08993 * 109.46955 * 300.00226 * 10 8 7 36 36 H 1.09000 * 109.47050 * 60.00054 * 10 8 7 37 37 H 1.08993 * 109.47322 * 54.99986 * 11 8 7 38 38 H 1.09002 * 109.47196 * 175.00109 * 11 8 7 39 39 H 1.08993 * 109.47331 * 300.00296 * 12 11 8 40 40 H 1.09001 * 109.46791 * 60.00740 * 12 11 8 41 41 H 0.96992 * 120.00104 * 0.02562 * 13 12 11 42 42 H 1.09001 * 109.47751 * 300.00332 * 16 14 13 43 43 H 1.09002 * 109.47032 * 60.00402 * 16 14 13 44 44 H 0.96998 * 120.00196 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0021 5 6 4.8765 1.3811 -0.0050 6 8 4.8213 2.5956 -0.0109 7 7 6.0730 0.7609 -0.0009 8 6 7.3072 1.5502 -0.0042 9 1 7.1594 2.4583 0.5802 10 6 7.6701 1.9233 -1.4431 11 6 8.4408 0.7268 0.6104 12 6 8.1352 0.4598 2.0857 13 7 9.2204 -0.3291 2.6741 14 6 9.1664 -0.6863 3.9725 15 8 8.2192 -0.3550 4.6537 16 6 10.2823 -1.4983 4.5777 17 16 9.9202 -1.8154 6.3225 18 6 11.3450 -2.7526 6.7654 19 1 12.1053 -2.9608 6.0271 20 6 11.4904 -3.2232 8.0630 21 7 12.5550 -3.9230 8.3940 22 14 10.1757 -2.8625 9.3401 23 1 9.1607 -3.9463 9.3255 24 1 10.8000 -2.7871 10.6855 25 1 9.5215 -1.5672 9.0247 26 7 3.5421 -0.7297 0.0046 27 7 2.3081 -1.0870 0.0060 28 1 1.9966 -2.0057 0.0103 29 1 -0.3633 0.0052 1.0276 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3633 -0.8927 -0.5093 32 1 2.0057 2.1260 -0.0004 33 1 6.1170 -0.2080 0.0036 34 1 8.5881 2.5109 -1.4456 35 1 7.8178 1.0152 -2.0276 36 1 6.8624 2.5098 -1.8810 37 1 8.5299 -0.2214 0.0804 38 1 9.3771 1.2788 0.5275 39 1 8.0462 1.4080 2.6157 40 1 7.1990 -0.0922 2.1686 41 1 9.9777 -0.5944 2.1292 42 1 10.3709 -2.4464 4.0473 43 1 11.2190 -0.9470 4.4950 44 1 12.6564 -4.2522 9.3007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704124979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:29 Heat of formation + Delta-G solvation = -16.185036 kcal Electronic energy + Delta-G solvation = -25737.465796 eV Core-core repulsion = 21817.181134 eV Total energy + Delta-G solvation = -3920.284661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.06407 -39.94769 -39.18404 -36.79934 -34.49272 -33.32417 -32.46411 -32.43287 -31.50106 -30.11882 -28.19404 -27.49649 -25.61607 -24.91139 -23.32676 -21.67279 -21.32959 -20.45938 -20.31751 -18.10108 -17.88282 -17.23361 -16.64588 -16.30031 -16.23581 -15.97688 -15.40048 -14.97691 -14.83994 -14.41537 -14.27268 -14.16039 -13.83530 -13.76164 -13.59544 -13.47654 -13.30934 -12.86999 -12.79274 -12.76603 -12.35306 -12.25605 -11.66771 -11.57809 -11.31114 -11.26100 -11.21452 -11.00378 -10.59614 -10.38893 -9.85357 -9.81090 -9.53041 -9.36572 -9.35257 -9.01227 -8.94149 -8.49118 -6.91183 -6.28580 -4.00177 1.22137 1.70053 2.39914 2.77257 2.88201 2.99889 3.15370 3.30637 3.34358 3.51458 3.65462 4.04979 4.22017 4.33648 4.44121 4.50622 4.54943 4.74004 4.77238 4.95215 4.99382 5.10225 5.10709 5.12412 5.19057 5.30067 5.30586 5.37346 5.39989 5.49810 5.60555 5.73936 5.80395 5.86059 5.92372 5.97636 6.01959 6.20279 6.53161 6.54299 7.15344 7.49035 7.62223 7.94341 7.94477 8.41804 8.51247 9.17696 10.80583 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002036 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.089061 B =13750.990021 C =15324.665007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.013 3.987 3 C -0.178 4.178 4 C -0.012 4.012 5 C 0.608 3.392 6 O -0.531 6.531 7 N -0.713 5.713 8 C 0.145 3.855 9 H 0.095 0.905 10 C -0.162 4.162 11 C -0.140 4.140 12 C 0.120 3.880 13 N -0.738 5.738 14 C 0.529 3.471 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.256 5.256 27 N -0.379 5.379 28 H 0.445 0.555 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.163 0.837 33 H 0.407 0.593 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.673 7.983 -24.718 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.173 4.173 5 C 0.392 3.608 6 O -0.405 6.405 7 N -0.365 5.365 8 C 0.041 3.959 9 H 0.113 0.887 10 C -0.221 4.221 11 C -0.178 4.178 12 C -0.004 4.004 13 N -0.392 5.392 14 C 0.315 3.685 15 O -0.393 6.393 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.093 5.093 27 N -0.094 5.094 28 H 0.290 0.710 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.500 8.427 -23.428 32.251 hybrid contribution 0.523 -0.947 -0.357 1.140 sum -19.977 7.479 -23.785 31.949 Atomic orbital electron populations 1.20374 0.86381 1.04039 1.03635 1.21497 0.95537 0.87107 1.07111 1.21532 0.90404 0.99835 1.08811 1.21916 0.95247 0.89794 1.10359 1.16854 0.81675 0.86388 0.75895 1.90803 1.86799 1.12846 1.50061 1.45956 1.05012 1.10838 1.74735 1.20940 0.82583 0.95198 0.97217 0.88662 1.22171 1.02247 1.01924 0.95731 1.22127 0.98996 1.01424 0.95232 1.21286 0.90724 0.96300 0.92095 1.45951 1.24778 1.57172 1.11313 1.20288 0.87541 0.79459 0.81226 1.90710 1.34271 1.53929 1.60409 1.23277 0.99664 1.02156 1.02343 1.84807 1.32821 1.71171 1.02826 1.22318 1.06090 1.38121 1.00336 0.89386 1.24714 0.95515 0.93473 0.97644 1.69938 1.27131 1.34535 1.20096 0.86733 0.82200 0.81674 0.81237 1.19241 1.19938 1.15906 1.73537 1.01765 1.14982 1.18982 1.43319 1.02911 1.09700 1.53463 0.70996 0.90062 0.89395 0.91016 0.81947 0.75748 0.91252 0.92290 0.91805 0.90415 0.89226 0.91430 0.91513 0.76683 0.88526 0.88445 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.25 10.44 36.01 0.38 0.13 16 2 C 0.01 0.09 7.23 -82.21 -0.59 -0.51 16 3 C -0.18 -1.64 10.73 -39.36 -0.42 -2.06 16 4 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 5 C 0.61 7.14 7.79 -12.39 -0.10 7.04 16 6 O -0.53 -7.65 16.59 5.30 0.09 -7.56 16 7 N -0.71 -6.60 4.53 -54.79 -0.25 -6.85 16 8 C 0.15 1.19 2.57 -67.93 -0.17 1.01 16 9 H 0.10 0.94 7.58 -51.93 -0.39 0.54 16 10 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 11 C -0.14 -0.98 4.87 -26.73 -0.13 -1.11 16 12 C 0.12 1.33 5.56 -4.04 -0.02 1.31 16 13 N -0.74 -9.18 5.56 -60.29 -0.33 -9.51 16 14 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 15 O -0.52 -11.50 15.86 5.55 0.09 -11.41 16 16 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.09 10.04 30.94 0.31 -14.77 16 19 H 0.09 2.65 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 22 Si 0.86 21.95 27.74 -169.99 -4.71 17.24 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 26 N -0.26 -2.46 11.92 33.42 0.40 -2.06 16 27 N -0.38 -2.54 6.83 33.50 0.23 -2.31 16 28 H 0.45 1.42 8.96 -190.44 -1.71 -0.29 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.41 3.35 8.33 -40.82 -0.34 3.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 41 H 0.40 3.67 8.47 -40.82 -0.35 3.32 16 42 H 0.10 1.73 8.14 -51.91 -0.42 1.30 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -38.50 392.89 -8.58 -47.08 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.84 Total: 1.52 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.95 Total: -0.54 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.82 Total: -46.59 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.18 Total: -18.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.50 -8.58 -47.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704124979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.896 kcal (2) G-P(sol) polarization free energy of solvation -38.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds