Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35360 * 126.38408 * 2 1 4 4 C 1.41507 * 105.50130 * 180.08882 * 3 2 1 5 5 C 1.47715 * 126.51802 * 179.90206 * 4 3 2 6 6 O 1.21576 * 119.99599 * 359.71552 * 5 4 3 7 7 N 1.34773 * 119.99965 * 179.70982 * 5 4 3 8 8 C 1.46500 * 119.99910 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47297 * 34.99871 * 8 7 5 10 10 C 1.53006 * 109.46998 * 275.00232 * 8 7 5 11 11 C 1.52997 * 109.47007 * 155.00372 * 8 7 5 12 12 C 1.53001 * 109.46997 * 294.99685 * 11 8 7 13 13 N 1.46504 * 109.46748 * 179.97438 * 12 11 8 14 14 C 1.34778 * 119.99455 * 180.02562 * 13 12 11 15 15 O 1.21285 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99746 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47326 * 180.02562 * 16 14 13 18 18 C 1.76193 * 100.00487 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99768 * 0.02562 * 18 17 16 20 20 C 1.38791 * 120.00543 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00496 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99741 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47202 * 90.00195 * 22 20 18 24 24 H 1.48504 * 109.47214 * 209.99966 * 22 20 18 25 25 H 1.48496 * 109.47149 * 330.00103 * 22 20 18 26 26 N 1.31807 * 106.96590 * 359.64278 * 4 3 2 27 27 N 1.28468 * 110.06847 * 0.22176 * 26 4 3 28 28 H 0.97004 * 124.88315 * 179.97438 * 27 26 4 29 29 H 1.08995 * 109.46784 * 270.29156 * 1 2 3 30 30 H 1.08995 * 109.47080 * 30.29554 * 1 2 3 31 31 H 1.09007 * 109.46923 * 150.29481 * 1 2 3 32 32 H 1.07999 * 127.25246 * 359.97438 * 3 2 1 33 33 H 0.96995 * 119.99797 * 0.02562 * 7 5 4 34 34 H 1.09001 * 109.47002 * 179.97438 * 10 8 7 35 35 H 1.08993 * 109.46955 * 300.00226 * 10 8 7 36 36 H 1.09000 * 109.47050 * 60.00054 * 10 8 7 37 37 H 1.08993 * 109.47322 * 54.99986 * 11 8 7 38 38 H 1.09002 * 109.47196 * 175.00109 * 11 8 7 39 39 H 1.08993 * 109.47331 * 300.00296 * 12 11 8 40 40 H 1.09001 * 109.46791 * 60.00740 * 12 11 8 41 41 H 0.96992 * 120.00104 * 0.02562 * 13 12 11 42 42 H 1.09001 * 109.47751 * 300.00332 * 16 14 13 43 43 H 1.09002 * 109.47032 * 60.00402 * 16 14 13 44 44 H 0.96998 * 120.00196 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0021 5 6 4.8765 1.3811 -0.0050 6 8 4.8213 2.5956 -0.0109 7 7 6.0730 0.7609 -0.0009 8 6 7.3072 1.5502 -0.0042 9 1 7.1594 2.4583 0.5802 10 6 7.6701 1.9233 -1.4431 11 6 8.4408 0.7268 0.6104 12 6 8.1352 0.4598 2.0857 13 7 9.2204 -0.3291 2.6741 14 6 9.1664 -0.6863 3.9725 15 8 8.2192 -0.3550 4.6537 16 6 10.2823 -1.4983 4.5777 17 16 9.9202 -1.8154 6.3225 18 6 11.3450 -2.7526 6.7654 19 1 12.1053 -2.9608 6.0271 20 6 11.4904 -3.2232 8.0630 21 7 12.5550 -3.9230 8.3940 22 14 10.1757 -2.8625 9.3401 23 1 9.1607 -3.9463 9.3255 24 1 10.8000 -2.7871 10.6855 25 1 9.5215 -1.5672 9.0247 26 7 3.5421 -0.7297 0.0046 27 7 2.3081 -1.0870 0.0060 28 1 1.9966 -2.0057 0.0103 29 1 -0.3633 0.0052 1.0276 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3633 -0.8927 -0.5093 32 1 2.0057 2.1260 -0.0004 33 1 6.1170 -0.2080 0.0036 34 1 8.5881 2.5109 -1.4456 35 1 7.8178 1.0152 -2.0276 36 1 6.8624 2.5098 -1.8810 37 1 8.5299 -0.2214 0.0804 38 1 9.3771 1.2788 0.5275 39 1 8.0462 1.4080 2.6157 40 1 7.1990 -0.0922 2.1686 41 1 9.9777 -0.5944 2.1292 42 1 10.3709 -2.4464 4.0473 43 1 11.2190 -0.9470 4.4950 44 1 12.6564 -4.2522 9.3007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704124979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = -46.636987 kcal Electronic energy + Delta-G solvation = -25738.786291 eV Core-core repulsion = 21817.181134 eV Total energy + Delta-G solvation = -3921.605157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.69412 -40.88583 -40.46595 -37.69737 -35.63362 -34.67459 -33.90266 -33.13613 -32.36351 -31.28027 -29.23696 -27.92804 -27.84622 -25.67608 -24.21056 -22.29214 -22.16032 -21.57044 -21.21934 -19.88914 -18.69333 -18.09522 -17.72719 -17.41558 -17.22438 -17.03662 -16.91228 -16.64524 -15.81132 -15.56851 -15.34929 -15.05150 -14.95618 -14.81817 -14.75874 -14.45321 -14.04727 -13.77450 -13.64209 -13.57596 -13.35212 -13.13367 -13.02531 -12.98452 -12.72752 -12.44546 -12.38176 -11.98457 -11.89554 -11.85570 -11.28398 -11.17682 -11.02542 -10.53552 -10.52813 -10.20754 -10.06730 -9.94768 -9.00286 -8.51932 -6.22680 0.47077 0.98675 1.09044 1.30285 1.46426 1.55349 1.55981 1.84574 2.20856 2.22409 2.25756 2.32521 2.71799 2.86179 3.36006 3.71349 3.76339 3.79473 3.98152 4.04386 4.09265 4.24382 4.40799 4.45001 4.47376 4.49669 4.58439 4.61537 4.77901 4.81854 4.88482 5.00998 5.02331 5.09560 5.12161 5.32143 5.33352 5.39638 5.48452 5.70549 6.07224 6.11184 6.40860 6.48349 6.83233 6.93430 7.12522 7.20527 8.60269 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002036 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.089061 B =13750.990021 C =15324.665007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 C -0.209 4.209 4 C -0.040 4.040 5 C 0.601 3.399 6 O -0.569 6.569 7 N -0.704 5.704 8 C 0.143 3.857 9 H 0.075 0.925 10 C -0.155 4.155 11 C -0.123 4.123 12 C 0.120 3.880 13 N -0.708 5.708 14 C 0.532 3.468 15 O -0.567 6.567 16 C -0.110 4.110 17 S -0.181 6.181 18 C -0.527 4.527 19 H 0.064 0.936 20 C 0.045 3.955 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.239 1.239 26 N -0.269 5.269 27 N -0.367 5.367 28 H 0.461 0.539 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.413 0.587 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.420 0.580 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 7.517 -26.268 34.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.237 4.237 4 C -0.199 4.199 5 C 0.387 3.613 6 O -0.446 6.446 7 N -0.356 5.356 8 C 0.039 3.961 9 H 0.093 0.907 10 C -0.213 4.213 11 C -0.161 4.161 12 C -0.004 4.004 13 N -0.363 5.363 14 C 0.317 3.683 15 O -0.446 6.446 16 C -0.261 4.261 17 S 0.045 5.955 18 C -0.675 4.675 19 H 0.082 0.918 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.163 1.163 26 N -0.107 5.107 27 N -0.085 5.085 28 H 0.309 0.691 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.179 0.821 33 H 0.250 0.750 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.258 0.742 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.325 7.918 -25.036 33.827 hybrid contribution 0.777 -0.814 -0.037 1.126 sum -20.548 7.105 -25.073 33.187 Atomic orbital electron populations 1.20543 0.83396 1.05652 1.04668 1.21972 0.97058 0.86065 1.04401 1.21743 0.90491 1.00802 1.10619 1.21947 0.95500 0.90451 1.12040 1.17111 0.82642 0.86118 0.75469 1.90766 1.87408 1.14329 1.52108 1.45966 1.04824 1.11176 1.73588 1.21019 0.82469 0.94605 0.98045 0.90699 1.22104 1.02236 1.02497 0.94475 1.22053 0.99258 1.02741 0.92008 1.21371 0.89680 0.94878 0.94453 1.45676 1.25560 1.55535 1.09488 1.20034 0.86383 0.79223 0.82641 1.90702 1.35869 1.56028 1.61980 1.23267 1.01084 1.03853 0.97848 1.84779 1.31487 1.70639 1.08584 1.22449 1.06641 1.38312 1.00073 0.91767 1.25549 0.97444 0.93399 0.99616 1.70011 1.28729 1.35599 1.21021 0.85879 0.79817 0.81324 0.79419 1.18716 1.18311 1.16271 1.73456 1.03230 1.14360 1.19623 1.43439 1.02219 1.10715 1.52082 0.69104 0.89137 0.88524 0.88697 0.82066 0.75039 0.89456 0.90903 0.93854 0.88050 0.86815 0.93076 0.92921 0.74222 0.86589 0.86598 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.44 71.24 0.74 0.45 16 2 C 0.03 0.38 7.23 41.40 0.30 0.68 16 3 C -0.21 -3.93 10.73 22.41 0.24 -3.69 16 4 C -0.04 -0.88 7.13 42.46 0.30 -0.58 16 5 C 0.60 14.74 7.79 86.75 0.68 15.42 16 6 O -0.57 -17.39 16.59 -3.95 -0.07 -17.46 16 7 N -0.70 -12.90 4.53 -445.52 -2.02 -14.91 16 8 C 0.14 2.19 2.57 44.99 0.12 2.31 16 9 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 10 C -0.15 -1.91 9.48 71.98 0.68 -1.23 16 11 C -0.12 -1.38 4.87 30.59 0.15 -1.23 16 12 C 0.12 2.47 5.56 86.38 0.48 2.95 16 13 N -0.71 -15.81 5.56 -463.05 -2.57 -18.38 16 14 C 0.53 18.27 7.85 87.66 0.69 18.96 16 15 O -0.57 -24.99 15.86 -3.04 -0.05 -25.04 16 16 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 17 S -0.18 -9.23 18.55 -56.49 -1.05 -10.28 16 18 C -0.53 -30.69 10.04 67.95 0.68 -30.00 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 20 C 0.05 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.72 13.97 21.65 0.30 -55.41 16 22 Si 0.91 45.33 27.74 68.60 1.90 47.24 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 26 N -0.27 -5.07 11.92 -48.17 -0.57 -5.65 16 27 N -0.37 -4.45 6.83 -47.93 -0.33 -4.78 16 28 H 0.46 2.06 8.96 -219.99 -1.97 0.08 16 29 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 32 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.41 6.47 8.33 -92.71 -0.77 5.70 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.05 1.27 7.75 -2.39 -0.02 1.26 16 41 H 0.42 6.07 8.47 -92.71 -0.79 5.28 16 42 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -86.32 392.89 -1.00 -87.32 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -2.51 Total: 13.82 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.97 Total: 3.54 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -5.19 Total: -99.14 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.11 Total: -42.50 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.05 Total: -10.28 kcal Total: -86.32 -1.00 -87.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704124979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.679 kcal (2) G-P(sol) polarization free energy of solvation -86.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds