Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35359 * 127.24962 * 2 1 4 4 N 1.35031 * 107.22881 * 179.97438 * 3 2 1 5 5 H 0.97003 * 124.88688 * 180.02562 * 4 3 2 6 6 N 1.28467 * 110.23213 * 359.72927 * 4 3 2 7 7 C 1.31814 * 110.07270 * 0.45384 * 6 4 3 8 8 C 1.47712 * 126.51857 * 179.82035 * 7 6 4 9 9 O 1.21570 * 119.99626 * 179.68719 * 8 7 6 10 10 N 1.34771 * 119.99766 * 359.69062 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 C 1.52998 * 109.47705 * 174.99884 * 13 12 11 16 16 N 1.46497 * 109.47408 * 295.00294 * 13 12 11 17 17 C 1.34775 * 120.00290 * 154.99725 * 16 13 12 18 18 O 1.21284 * 120.00239 * 359.97438 * 17 16 13 19 19 C 1.50707 * 119.99766 * 179.97438 * 17 16 13 20 20 S 1.81004 * 109.46836 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99807 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99953 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00100 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47103 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46929 * 119.99777 * 25 23 21 28 28 H 1.48494 * 109.47066 * 239.99804 * 25 23 21 29 29 H 1.09000 * 109.47261 * 269.99908 * 1 2 3 30 30 H 1.08996 * 109.47165 * 30.00062 * 1 2 3 31 31 H 1.08999 * 109.46994 * 149.99798 * 1 2 3 32 32 H 1.07998 * 126.38475 * 0.02582 * 3 2 1 33 33 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 35 35 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 36 36 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 38 38 H 1.09001 * 109.46974 * 300.00556 * 15 13 12 39 39 H 1.09000 * 109.46929 * 59.99736 * 15 13 12 40 40 H 1.09000 * 109.47812 * 179.97438 * 15 13 12 41 41 H 0.97003 * 119.99849 * 334.99597 * 16 13 12 42 42 H 1.08993 * 109.47314 * 299.99790 * 19 17 16 43 43 H 1.08997 * 109.47088 * 60.00406 * 19 17 16 44 44 H 0.97001 * 119.99230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5950 0.6152 0.0006 5 1 4.3887 1.1728 0.0011 6 7 3.5998 -0.6695 0.0066 7 6 2.3634 -1.1265 0.0005 8 6 1.9505 -2.5447 0.0007 9 8 0.7697 -2.8339 0.0004 10 7 2.8828 -3.5179 0.0013 11 6 2.4732 -4.9246 0.0009 12 6 3.7156 -5.8175 0.0010 13 6 3.2879 -7.2864 0.0013 14 1 2.6204 -7.4706 -0.8406 15 6 4.5250 -8.1779 -0.1243 16 7 2.5909 -7.5920 1.2530 17 6 1.7053 -8.6068 1.3009 18 8 1.4850 -9.2669 0.3076 19 6 0.9887 -8.9214 2.5889 20 16 -0.1250 -10.3250 2.3323 21 6 -0.8103 -10.4712 3.9489 22 1 -0.5005 -9.7930 4.7303 23 6 -1.7485 -11.4581 4.2183 24 7 -2.1265 -12.2844 3.2659 25 14 -2.4756 -11.6127 5.9321 26 1 -1.8898 -10.5716 6.8141 27 1 -3.9480 -11.4325 5.8631 28 1 -2.1666 -12.9573 6.4814 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.0220 2.1137 0.0004 33 1 3.8249 -3.2872 0.0012 34 1 1.8777 -5.1298 0.8905 35 1 1.8789 -5.1297 -0.8895 36 1 4.3107 -5.6121 -0.8887 37 1 4.3103 -5.6125 0.8912 38 1 5.0436 -7.9506 -1.0557 39 1 5.1925 -7.9937 0.7175 40 1 4.2203 -9.2245 -0.1237 41 1 2.7667 -7.0639 2.0475 42 1 1.7184 -9.1721 3.3587 43 1 0.4110 -8.0528 2.9048 44 1 -2.7824 -12.9738 3.4542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704132925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -14.149047 kcal Electronic energy + Delta-G solvation = -25816.402325 eV Core-core repulsion = 21896.205951 eV Total energy + Delta-G solvation = -3920.196374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.08912 -39.75623 -39.22501 -36.57978 -34.66076 -33.40011 -32.38759 -32.12539 -31.47489 -29.29826 -28.41732 -27.45478 -25.44675 -24.98944 -22.97522 -21.54535 -21.01728 -20.34670 -20.20382 -18.64473 -17.81697 -17.33357 -16.57596 -16.26509 -16.25040 -15.80424 -15.23027 -14.87576 -14.76534 -14.52215 -14.16987 -13.78408 -13.69487 -13.51581 -13.45643 -13.19355 -13.15478 -12.83867 -12.60574 -12.43792 -12.09989 -11.89615 -11.70577 -11.49377 -11.25386 -11.05178 -11.02452 -10.97255 -10.71605 -10.25573 -9.87599 -9.76171 -9.34856 -9.32955 -9.20791 -9.03701 -8.86075 -8.18211 -6.44884 -6.17732 -3.87544 1.19090 1.68984 2.38400 2.91247 3.08127 3.14162 3.15442 3.24852 3.31516 3.36563 3.76408 4.04699 4.24424 4.36474 4.51547 4.65102 4.79987 4.82959 4.93333 5.12960 5.17493 5.20752 5.28282 5.36096 5.39835 5.52642 5.59915 5.62905 5.66711 5.71813 5.80074 5.81418 5.94841 6.04971 6.12968 6.19294 6.20126 6.21893 6.49808 6.70519 7.15045 7.45055 7.64162 7.75744 7.97882 8.39719 8.67265 9.27834 10.89763 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.002019 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.273747 B =13864.287429 C =15441.439527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.143 4.143 3 C -0.021 4.021 4 N -0.381 5.381 5 H 0.447 0.553 6 N -0.260 5.260 7 C -0.013 4.013 8 C 0.601 3.399 9 O -0.522 6.522 10 N -0.719 5.719 11 C 0.117 3.883 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.092 0.908 15 C -0.162 4.162 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.455 28.791 -6.984 33.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.153 4.153 3 C -0.165 4.165 4 N -0.095 5.095 5 H 0.291 0.709 6 N -0.097 5.097 7 C -0.174 4.174 8 C 0.385 3.615 9 O -0.395 6.395 10 N -0.371 5.371 11 C -0.006 4.006 12 C -0.176 4.176 13 C 0.041 3.959 14 H 0.110 0.890 15 C -0.221 4.221 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.202 0.798 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.166 26.912 -8.705 32.578 hybrid contribution 0.112 1.752 2.686 3.208 sum 16.278 28.664 -6.019 33.508 Atomic orbital electron populations 1.20218 0.87840 1.03289 1.02690 1.20454 0.97790 0.90375 1.06702 1.22730 0.84074 1.00682 1.09040 1.43201 1.08666 1.04368 1.53297 0.70860 1.73487 1.23138 0.93993 1.19096 1.21907 0.89523 0.95180 1.10769 1.16869 0.85503 0.82581 0.76593 1.90831 1.16752 1.82562 1.49403 1.45843 1.09913 1.06172 1.75165 1.21465 0.97060 0.78543 1.03569 1.22104 0.97522 0.94169 1.03772 1.20773 0.94296 0.92210 0.88596 0.89013 1.22171 0.97137 1.01192 1.01598 1.46130 1.44453 1.35473 1.12996 1.20290 0.78270 0.79143 0.90278 1.90698 1.63258 1.48752 1.36363 1.23539 1.03199 1.06464 0.97282 1.85382 1.47681 1.33620 1.16688 1.22914 1.28682 1.20276 0.96341 0.90901 1.24998 0.95723 0.94772 0.98172 1.70034 1.30525 1.17488 1.32257 0.86116 0.78808 0.78092 0.82477 1.19634 1.20563 1.20618 0.91204 0.91861 0.89721 0.79794 0.76031 0.90620 0.90816 0.89693 0.90586 0.91878 0.92557 0.91440 0.76914 0.89300 0.89210 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.93 36.01 0.36 -0.33 16 2 C -0.14 -1.27 6.25 -104.40 -0.65 -1.92 16 3 C -0.02 -0.11 11.97 -17.17 -0.21 -0.32 16 4 N -0.38 -1.91 6.83 30.47 0.21 -1.70 16 5 H 0.45 0.45 8.96 -190.44 -1.71 -1.26 16 6 N -0.26 -2.15 11.92 33.42 0.40 -1.75 16 7 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 8 C 0.60 7.25 7.82 -12.39 -0.10 7.16 16 9 O -0.52 -8.04 15.12 5.30 0.08 -7.96 16 10 N -0.72 -6.78 5.55 -61.29 -0.34 -7.12 16 11 C 0.12 1.16 5.56 -4.04 -0.02 1.14 16 12 C -0.14 -1.04 4.87 -26.74 -0.13 -1.17 16 13 C 0.15 1.61 2.57 -67.94 -0.17 1.43 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 15 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 16 N -0.74 -9.55 4.53 -53.81 -0.24 -9.80 16 17 C 0.53 9.94 7.81 -10.98 -0.09 9.85 16 18 O -0.52 -11.68 15.53 5.55 0.09 -11.59 16 19 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.46 9.50 30.94 0.29 -15.16 16 22 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.52 13.22 55.49 0.73 -25.79 16 25 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.90 6.72 -51.93 -0.35 0.55 16 32 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 33 H 0.40 2.94 8.20 -40.82 -0.33 2.61 16 34 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -38.86 392.09 -8.97 -47.83 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.73 Total: 1.40 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.83 Total: -2.30 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.76 Total: -46.16 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.17 Total: -19.55 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.86 -8.97 -47.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704132925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.678 kcal (2) G-P(sol) polarization free energy of solvation -38.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds