Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35359 * 127.24962 * 2 1 4 4 N 1.35031 * 107.22881 * 179.97438 * 3 2 1 5 5 H 0.97003 * 124.88688 * 180.02562 * 4 3 2 6 6 N 1.28467 * 110.23213 * 359.72927 * 4 3 2 7 7 C 1.31814 * 110.07270 * 0.45384 * 6 4 3 8 8 C 1.47712 * 126.51857 * 179.82035 * 7 6 4 9 9 O 1.21570 * 119.99626 * 179.68719 * 8 7 6 10 10 N 1.34771 * 119.99766 * 359.69062 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46906 * 55.00224 * 13 12 11 15 15 C 1.52998 * 109.47705 * 174.99884 * 13 12 11 16 16 N 1.46497 * 109.47408 * 295.00294 * 13 12 11 17 17 C 1.34775 * 120.00290 * 154.99725 * 16 13 12 18 18 O 1.21284 * 120.00239 * 359.97438 * 17 16 13 19 19 C 1.50707 * 119.99766 * 179.97438 * 17 16 13 20 20 S 1.81004 * 109.46836 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99807 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00353 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99953 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99760 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00100 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47103 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46929 * 119.99777 * 25 23 21 28 28 H 1.48494 * 109.47066 * 239.99804 * 25 23 21 29 29 H 1.09000 * 109.47261 * 269.99908 * 1 2 3 30 30 H 1.08996 * 109.47165 * 30.00062 * 1 2 3 31 31 H 1.08999 * 109.46994 * 149.99798 * 1 2 3 32 32 H 1.07998 * 126.38475 * 0.02582 * 3 2 1 33 33 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 35 35 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 36 36 H 1.09002 * 109.47153 * 300.00008 * 12 11 10 37 37 H 1.08998 * 109.47533 * 59.99637 * 12 11 10 38 38 H 1.09001 * 109.46974 * 300.00556 * 15 13 12 39 39 H 1.09000 * 109.46929 * 59.99736 * 15 13 12 40 40 H 1.09000 * 109.47812 * 179.97438 * 15 13 12 41 41 H 0.97003 * 119.99849 * 334.99597 * 16 13 12 42 42 H 1.08993 * 109.47314 * 299.99790 * 19 17 16 43 43 H 1.08997 * 109.47088 * 60.00406 * 19 17 16 44 44 H 0.97001 * 119.99230 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5950 0.6152 0.0006 5 1 4.3887 1.1728 0.0011 6 7 3.5998 -0.6695 0.0066 7 6 2.3634 -1.1265 0.0005 8 6 1.9505 -2.5447 0.0007 9 8 0.7697 -2.8339 0.0004 10 7 2.8828 -3.5179 0.0013 11 6 2.4732 -4.9246 0.0009 12 6 3.7156 -5.8175 0.0010 13 6 3.2879 -7.2864 0.0013 14 1 2.6204 -7.4706 -0.8406 15 6 4.5250 -8.1779 -0.1243 16 7 2.5909 -7.5920 1.2530 17 6 1.7053 -8.6068 1.3009 18 8 1.4850 -9.2669 0.3076 19 6 0.9887 -8.9214 2.5889 20 16 -0.1250 -10.3250 2.3323 21 6 -0.8103 -10.4712 3.9489 22 1 -0.5005 -9.7930 4.7303 23 6 -1.7485 -11.4581 4.2183 24 7 -2.1265 -12.2844 3.2659 25 14 -2.4756 -11.6127 5.9321 26 1 -1.8898 -10.5716 6.8141 27 1 -3.9480 -11.4325 5.8631 28 1 -2.1666 -12.9573 6.4814 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.0220 2.1137 0.0004 33 1 3.8249 -3.2872 0.0012 34 1 1.8777 -5.1298 0.8905 35 1 1.8789 -5.1297 -0.8895 36 1 4.3107 -5.6121 -0.8887 37 1 4.3103 -5.6125 0.8912 38 1 5.0436 -7.9506 -1.0557 39 1 5.1925 -7.9937 0.7175 40 1 4.2203 -9.2245 -0.1237 41 1 2.7667 -7.0639 2.0475 42 1 1.7184 -9.1721 3.3587 43 1 0.4110 -8.0528 2.9048 44 1 -2.7824 -12.9738 3.4542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704132925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -45.196542 kcal Electronic energy + Delta-G solvation = -25817.748645 eV Core-core repulsion = 21896.205951 eV Total energy + Delta-G solvation = -3921.542695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.63289 -40.88669 -40.36842 -37.67492 -35.67399 -34.58702 -33.99408 -33.16532 -32.30763 -30.38145 -29.64574 -28.03931 -27.66223 -25.74785 -23.78391 -22.55159 -21.66967 -21.53351 -21.04324 -19.83208 -19.12574 -18.12649 -17.90640 -17.36186 -16.97405 -16.88865 -16.81475 -16.35381 -16.19907 -15.76846 -15.31873 -14.82799 -14.77243 -14.48380 -14.39587 -14.33402 -14.02678 -13.93278 -13.80386 -13.30681 -13.16253 -13.07145 -13.02163 -12.91364 -12.59272 -12.45214 -12.40989 -11.92577 -11.86669 -11.70358 -11.17320 -11.15966 -10.89642 -10.50948 -10.27349 -10.17727 -10.04743 -9.79179 -8.66379 -8.35019 -6.12741 0.49479 1.16788 1.27325 1.40981 1.47059 1.58537 1.64672 1.88506 2.26099 2.27059 2.31597 2.33085 2.98944 3.32507 3.39303 3.72595 3.82960 3.96220 4.02493 4.08425 4.18868 4.29778 4.43819 4.47710 4.50915 4.51940 4.56933 4.63773 4.82868 4.88361 4.89483 5.01237 5.04120 5.13683 5.19062 5.33434 5.35628 5.41754 5.53194 5.57269 6.13596 6.19839 6.44758 6.53578 6.87453 7.06246 7.15649 7.28524 8.74521 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.002019 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.273747 B =13864.287429 C =15441.439527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.180 4.180 3 C 0.008 3.992 4 N -0.361 5.361 5 H 0.466 0.534 6 N -0.265 5.265 7 C -0.044 4.044 8 C 0.593 3.407 9 O -0.569 6.569 10 N -0.703 5.703 11 C 0.118 3.882 12 C -0.118 4.118 13 C 0.143 3.857 14 H 0.066 0.934 15 C -0.157 4.157 16 N -0.710 5.710 17 C 0.535 3.465 18 O -0.564 6.564 19 C -0.131 4.131 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.272 1.272 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.229 0.771 33 H 0.418 0.582 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.414 0.586 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.014 32.153 -5.514 37.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.190 4.190 3 C -0.137 4.137 4 N -0.078 5.078 5 H 0.315 0.685 6 N -0.103 5.103 7 C -0.204 4.204 8 C 0.378 3.622 9 O -0.446 6.446 10 N -0.356 5.356 11 C -0.006 4.006 12 C -0.156 4.156 13 C 0.038 3.962 14 H 0.084 0.916 15 C -0.215 4.215 16 N -0.364 5.364 17 C 0.321 3.679 18 O -0.442 6.442 19 C -0.283 4.283 20 S 0.076 5.924 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.198 1.198 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.828 30.329 -7.224 36.422 hybrid contribution -0.553 0.878 2.155 2.392 sum 18.275 31.207 -5.069 36.518 Atomic orbital electron populations 1.20130 0.88286 1.02931 1.02255 1.20704 0.98139 0.91259 1.08871 1.23267 0.83167 1.01631 1.05671 1.43356 1.09720 1.03636 1.51116 0.68490 1.73411 1.22055 0.95517 1.19338 1.21755 0.90816 0.94550 1.13238 1.17280 0.85165 0.83872 0.75850 1.90800 1.18640 1.83452 1.51705 1.45699 1.10279 1.05511 1.74071 1.21376 0.98007 0.79416 1.01762 1.21993 0.96557 0.90566 1.06467 1.20965 0.93988 0.94827 0.86402 0.91600 1.22116 0.96853 0.98618 1.03901 1.45915 1.42453 1.33369 1.14710 1.20000 0.78984 0.80063 0.88854 1.90686 1.65121 1.50893 1.37534 1.23390 1.02280 1.03470 0.99111 1.85551 1.50512 1.38239 1.18099 1.23236 1.29045 1.20726 0.96343 0.90032 1.26153 0.95999 0.94129 1.03028 1.70196 1.31314 1.18305 1.34941 0.84889 0.77846 0.78596 0.76507 1.18102 1.19938 1.19762 0.91734 0.89274 0.92952 0.75445 0.74460 0.92411 0.92940 0.86965 0.87813 0.89358 0.90514 0.94962 0.74892 0.87180 0.87739 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.93 71.24 0.71 -0.62 16 2 C -0.18 -2.98 6.25 -19.72 -0.12 -3.10 16 3 C 0.01 0.05 11.97 83.54 1.00 1.05 16 4 N -0.36 -2.43 6.83 -57.52 -0.39 -2.82 16 5 H 0.47 -0.90 8.96 -219.99 -1.97 -2.87 16 6 N -0.26 -3.84 11.92 -48.17 -0.57 -4.41 16 7 C -0.04 -0.89 7.13 42.46 0.30 -0.59 16 8 C 0.59 14.72 7.82 86.75 0.68 15.40 16 9 O -0.57 -18.77 15.12 -3.94 -0.06 -18.83 16 10 N -0.70 -12.83 5.55 -466.10 -2.59 -15.41 16 11 C 0.12 2.30 5.56 86.38 0.48 2.78 16 12 C -0.12 -1.48 4.87 30.59 0.15 -1.33 16 13 C 0.14 2.97 2.57 44.99 0.12 3.08 16 14 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 15 C -0.16 -2.93 9.48 71.98 0.68 -2.25 16 16 N -0.71 -17.82 4.53 -442.54 -2.00 -19.82 16 17 C 0.54 20.24 7.81 87.66 0.68 20.92 16 18 O -0.56 -26.69 15.53 -3.04 -0.05 -26.73 16 19 C -0.13 -5.41 6.16 71.24 0.44 -4.97 16 20 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 21 C -0.55 -32.03 9.50 67.96 0.65 -31.39 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 25 Si 1.00 44.74 29.55 68.60 2.03 46.77 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.22 6.72 -2.39 -0.02 1.20 16 32 H 0.23 -0.49 8.06 -2.91 -0.02 -0.51 16 33 H 0.42 5.27 8.20 -92.71 -0.76 4.51 16 34 H 0.06 1.34 7.75 -2.39 -0.02 1.32 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.41 7.67 8.60 -92.71 -0.80 6.88 16 42 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 43 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -91.63 392.09 -0.76 -92.39 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -2.47 Total: 15.45 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.23 Total: 0.13 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -5.27 Total: -99.35 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.11 Total: -45.57 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -91.63 -0.76 -92.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704132925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.190 kcal (2) G-P(sol) polarization free energy of solvation -91.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds