Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21281 * 119.99661 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00021 * 0.02562 * 9 7 6 11 11 C 1.46502 * 120.00128 * 179.97438 * 9 7 6 12 12 C 1.53001 * 109.47022 * 89.99931 * 11 9 7 13 13 N 1.46502 * 109.47022 * 180.02562 * 12 11 9 14 14 C 1.34774 * 119.99896 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00160 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99860 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99866 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99900 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46896 * 59.99332 * 22 20 18 24 24 H 1.48498 * 109.46854 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46886 * 299.99743 * 22 20 18 26 26 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 27 27 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 30 30 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 31 31 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 32 32 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 33 33 H 1.09007 * 109.47531 * 89.99456 * 10 9 7 34 34 H 1.09002 * 109.47218 * 209.99724 * 10 9 7 35 35 H 1.09006 * 109.47161 * 329.99811 * 10 9 7 36 36 H 1.09001 * 109.47027 * 210.00261 * 11 9 7 37 37 H 1.09007 * 109.46707 * 330.00129 * 11 9 7 38 38 H 1.09002 * 109.47024 * 300.00301 * 12 11 9 39 39 H 1.08997 * 109.46683 * 60.00424 * 12 11 9 40 40 H 0.97002 * 120.00087 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.46808 * 299.99943 * 16 14 13 42 42 H 1.09007 * 109.46661 * 59.99648 * 16 14 13 43 43 H 0.97003 * 119.99836 * 180.02562 * 21 20 18 44 44 H 1.08003 * 126.13278 * 180.23755 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3283 -0.2654 -1.9162 9 7 6.8181 -1.8132 -1.3624 10 6 7.2175 -2.8882 -0.4510 11 6 7.6778 -1.4542 -2.4930 12 6 8.6656 -0.3696 -2.0584 13 7 9.5248 -0.0102 -3.1892 14 6 10.4777 0.9311 -3.0390 15 8 10.6241 1.4802 -1.9675 16 6 11.3612 1.3013 -4.2023 17 16 12.5299 2.5841 -3.6880 18 6 13.4099 2.8188 -5.1965 19 1 13.1489 2.2392 -6.0696 20 6 14.4391 3.7477 -5.2622 21 7 14.7574 4.4537 -4.1978 22 14 15.3725 3.9960 -6.8611 23 1 14.4291 4.4299 -7.9227 24 1 16.4142 5.0368 -6.6696 25 1 16.0157 2.7191 -7.2622 26 6 2.3032 -1.0942 0.0051 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8903 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9951 2.1578 -0.0008 31 1 5.3220 -1.3842 0.9333 32 1 4.4729 -2.5683 -0.0891 33 1 6.8262 -3.8380 -0.8156 34 1 8.3053 -2.9381 -0.4025 35 1 6.8183 -2.6886 0.5435 36 1 8.2278 -2.3347 -2.8252 37 1 7.0635 -1.0792 -3.3118 38 1 8.1155 0.5108 -1.7262 39 1 9.2797 -0.7447 -1.2397 40 1 9.4080 -0.4497 -4.0460 41 1 11.9109 0.4210 -4.5356 42 1 10.7464 1.6770 -5.0203 43 1 15.4764 5.1032 -4.2439 44 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704182908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = 16.875564 kcal Electronic energy + Delta-G solvation = -25664.272754 eV Core-core repulsion = 21745.421708 eV Total energy + Delta-G solvation = -3918.851046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.58081 -40.22743 -39.06434 -36.40359 -34.59885 -33.97132 -32.41260 -31.90645 -30.77137 -29.17282 -28.20720 -26.93144 -25.81704 -25.43402 -23.33124 -21.57465 -20.69184 -20.48354 -19.50751 -17.91493 -17.75918 -17.36227 -16.62791 -16.44669 -15.81888 -15.67290 -15.36987 -14.97179 -14.78769 -14.53342 -14.10057 -14.00100 -13.84479 -13.69689 -13.51341 -13.30077 -13.15965 -13.06231 -12.94725 -12.62204 -12.54223 -12.26209 -12.18603 -12.11111 -11.42606 -11.03095 -11.02407 -10.77292 -10.75685 -10.43875 -9.81862 -9.63070 -9.46451 -9.19043 -9.04987 -8.91152 -8.61157 -8.22330 -6.48404 -6.19808 -3.90568 1.54157 1.98286 2.09131 2.47396 2.58714 3.09526 3.11154 3.24811 3.29097 3.34123 3.72445 3.85792 4.08409 4.22035 4.39451 4.44273 4.56889 4.61802 4.67914 4.72546 4.90465 4.97533 5.09675 5.14375 5.15142 5.16413 5.19741 5.40802 5.50319 5.61363 5.63549 5.70493 5.75183 5.85761 5.90514 6.02110 6.14972 6.38776 6.57168 6.61476 6.80751 7.46159 7.60697 7.65506 7.69174 8.36596 8.61195 9.25166 10.87567 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.001687 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.884117 B =16595.465608 C =17301.378011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.238 4.238 3 C 0.045 3.955 4 N -0.261 5.261 5 N -0.367 5.367 6 C 0.121 3.879 7 C 0.499 3.501 8 O -0.498 6.498 9 N -0.614 5.614 10 C 0.071 3.929 11 C 0.108 3.892 12 C 0.108 3.892 13 N -0.737 5.737 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.048 3.952 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.182 0.818 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.196 -21.006 9.009 34.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.249 4.249 3 C -0.142 4.142 4 N -0.081 5.081 5 N -0.149 5.149 6 C -0.005 4.005 7 C 0.284 3.716 8 O -0.371 6.371 9 N -0.350 5.350 10 C -0.072 4.072 11 C -0.015 4.015 12 C -0.018 4.018 13 N -0.393 5.393 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.096 4.096 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.199 0.801 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -24.665 -19.192 10.488 32.965 hybrid contribution -0.304 -1.104 -2.622 2.861 sum -24.969 -20.296 7.867 33.125 Atomic orbital electron populations 1.20049 0.89253 1.02072 1.01575 1.20151 0.97078 0.91893 1.15804 1.23889 0.89975 0.99937 1.00445 1.77563 1.20972 0.87894 1.21666 1.47962 1.04251 1.04970 1.57756 1.21482 0.85458 0.94219 0.99350 1.20592 0.81779 0.82563 0.86683 1.90837 1.71956 1.28614 1.45645 1.47676 1.20699 1.36737 1.29896 1.21953 1.02577 0.89546 0.93102 1.21605 0.92520 0.98362 0.89046 1.21548 0.92084 0.98262 0.89901 1.45829 1.36437 1.42768 1.14221 1.20317 0.79730 0.78161 0.89907 1.90710 1.68873 1.51456 1.27927 1.23527 1.01834 1.05847 0.99124 1.85416 1.36253 1.43847 1.17806 1.22834 1.21190 1.26934 0.97534 0.90957 1.24992 0.96291 0.94791 0.97480 1.70011 1.28956 1.22900 1.28408 0.86219 0.79111 0.78056 0.82079 1.19939 1.20802 1.19952 1.22264 0.83758 1.00022 1.03571 0.92109 0.91819 0.92257 0.80061 0.86690 0.85803 0.91888 0.90017 0.90835 0.89495 0.89055 0.91200 0.91561 0.76799 0.89163 0.89131 0.92129 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.37 36.01 0.37 -0.03 16 2 C -0.24 -2.05 6.10 -105.05 -0.64 -2.69 16 3 C 0.05 0.48 11.96 -17.36 -0.21 0.28 16 4 N -0.26 -3.47 11.64 30.62 0.36 -3.12 16 5 N -0.37 -3.64 3.40 -62.54 -0.21 -3.85 16 6 C 0.12 0.78 5.54 -5.19 -0.03 0.75 16 7 C 0.50 5.00 7.70 -10.99 -0.08 4.91 16 8 O -0.50 -7.63 15.28 5.56 0.08 -7.55 16 9 N -0.61 -4.60 2.87 -181.57 -0.52 -5.12 16 10 C 0.07 0.23 10.24 59.84 0.61 0.84 16 11 C 0.11 0.93 5.52 -4.04 -0.02 0.90 16 12 C 0.11 1.34 6.00 -4.04 -0.02 1.31 16 13 N -0.74 -10.16 5.56 -60.29 -0.33 -10.49 16 14 C 0.53 10.32 7.85 -10.99 -0.09 10.24 16 15 O -0.52 -12.26 15.86 5.55 0.09 -12.17 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.50 9.50 30.94 0.29 -15.21 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 21 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 22 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 C 0.05 0.38 11.36 -17.23 -0.20 0.18 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 0.55 7.40 -51.93 -0.38 0.16 16 32 H 0.12 0.26 8.04 -51.93 -0.42 -0.15 16 33 H 0.06 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 35 H 0.07 0.11 6.44 -51.93 -0.33 -0.22 16 36 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.09 0.92 7.42 -51.93 -0.39 0.53 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.11 8.47 -40.82 -0.35 3.77 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -42.11 394.36 -7.46 -49.57 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.48 Total: -0.79 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 0.12 Total: 0.59 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.02 Total: -48.33 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.17 Total: -19.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -42.11 -7.46 -49.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.445 kcal (2) G-P(sol) polarization free energy of solvation -42.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds