Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21281 * 119.99661 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00021 * 0.02562 * 9 7 6 11 11 C 1.46502 * 120.00128 * 179.97438 * 9 7 6 12 12 C 1.53001 * 109.47022 * 89.99931 * 11 9 7 13 13 N 1.46502 * 109.47022 * 180.02562 * 12 11 9 14 14 C 1.34774 * 119.99896 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00160 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99860 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99866 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99900 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46896 * 59.99332 * 22 20 18 24 24 H 1.48498 * 109.46854 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46886 * 299.99743 * 22 20 18 26 26 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 27 27 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 30 30 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 31 31 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 32 32 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 33 33 H 1.09007 * 109.47531 * 89.99456 * 10 9 7 34 34 H 1.09002 * 109.47218 * 209.99724 * 10 9 7 35 35 H 1.09006 * 109.47161 * 329.99811 * 10 9 7 36 36 H 1.09001 * 109.47027 * 210.00261 * 11 9 7 37 37 H 1.09007 * 109.46707 * 330.00129 * 11 9 7 38 38 H 1.09002 * 109.47024 * 300.00301 * 12 11 9 39 39 H 1.08997 * 109.46683 * 60.00424 * 12 11 9 40 40 H 0.97002 * 120.00087 * 0.02562 * 13 12 11 41 41 H 1.09001 * 109.46808 * 299.99943 * 16 14 13 42 42 H 1.09007 * 109.46661 * 59.99648 * 16 14 13 43 43 H 0.97003 * 119.99836 * 180.02562 * 21 20 18 44 44 H 1.08003 * 126.13278 * 180.23755 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3283 -0.2654 -1.9162 9 7 6.8181 -1.8132 -1.3624 10 6 7.2175 -2.8882 -0.4510 11 6 7.6778 -1.4542 -2.4930 12 6 8.6656 -0.3696 -2.0584 13 7 9.5248 -0.0102 -3.1892 14 6 10.4777 0.9311 -3.0390 15 8 10.6241 1.4802 -1.9675 16 6 11.3612 1.3013 -4.2023 17 16 12.5299 2.5841 -3.6880 18 6 13.4099 2.8188 -5.1965 19 1 13.1489 2.2392 -6.0696 20 6 14.4391 3.7477 -5.2622 21 7 14.7574 4.4537 -4.1978 22 14 15.3725 3.9960 -6.8611 23 1 14.4291 4.4299 -7.9227 24 1 16.4142 5.0368 -6.6696 25 1 16.0157 2.7191 -7.2622 26 6 2.3032 -1.0942 0.0051 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8903 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9951 2.1578 -0.0008 31 1 5.3220 -1.3842 0.9333 32 1 4.4729 -2.5683 -0.0891 33 1 6.8262 -3.8380 -0.8156 34 1 8.3053 -2.9381 -0.4025 35 1 6.8183 -2.6886 0.5435 36 1 8.2278 -2.3347 -2.8252 37 1 7.0635 -1.0792 -3.3118 38 1 8.1155 0.5108 -1.7262 39 1 9.2797 -0.7447 -1.2397 40 1 9.4080 -0.4497 -4.0460 41 1 11.9109 0.4210 -4.5356 42 1 10.7464 1.6770 -5.0203 43 1 15.4764 5.1032 -4.2439 44 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704182908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = -15.745198 kcal Electronic energy + Delta-G solvation = -25665.687296 eV Core-core repulsion = 21745.421708 eV Total energy + Delta-G solvation = -3920.265589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22543 -41.03882 -40.48820 -37.27096 -35.71450 -34.66289 -34.59636 -32.53619 -31.97623 -30.22997 -28.95608 -27.71372 -27.42225 -26.40510 -24.24718 -22.31574 -21.91444 -21.28269 -20.25591 -19.80949 -18.47073 -18.04024 -17.82989 -17.59716 -16.89232 -16.79944 -16.62341 -16.59374 -15.92427 -15.59321 -15.23559 -15.11615 -14.81749 -14.50236 -14.39605 -14.24972 -14.04006 -13.86832 -13.63725 -13.56177 -13.26635 -13.24680 -13.18849 -12.94522 -12.87478 -12.67878 -12.63604 -12.43502 -11.77082 -11.45785 -11.23068 -11.14090 -11.06716 -10.33646 -10.30666 -10.24895 -9.85923 -9.22470 -8.69613 -8.35677 -6.14856 0.91511 1.21366 1.37098 1.43474 1.45467 1.48467 1.53516 1.56089 1.87630 1.90643 2.26148 2.38757 2.98368 3.28130 3.32680 3.66225 3.76727 3.90461 3.96183 3.99315 4.05033 4.17593 4.26747 4.30009 4.32752 4.47158 4.50397 4.59385 4.66692 4.71216 4.84992 4.93289 4.97032 5.01839 5.22593 5.25823 5.33962 5.40140 5.41423 5.73386 6.07536 6.18307 6.25481 6.41387 6.77600 7.00138 7.05110 7.16675 8.73426 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.001687 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.884117 B =16595.465608 C =17301.378011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.256 4.256 3 C 0.026 3.974 4 N -0.326 5.326 5 N -0.374 5.374 6 C 0.117 3.883 7 C 0.490 3.510 8 O -0.565 6.565 9 N -0.609 5.609 10 C 0.061 3.939 11 C 0.117 3.883 12 C 0.113 3.887 13 N -0.709 5.709 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.548 4.548 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.260 1.260 26 C 0.056 3.944 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.189 0.811 31 H 0.133 0.867 32 H 0.177 0.823 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.069 0.931 40 H 0.420 0.580 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.161 -24.911 7.940 37.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.267 4.267 3 C -0.160 4.160 4 N -0.147 5.147 5 N -0.157 5.157 6 C -0.007 4.007 7 C 0.277 3.723 8 O -0.442 6.442 9 N -0.343 5.343 10 C -0.080 4.080 11 C -0.007 4.007 12 C -0.013 4.013 13 N -0.364 5.364 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.696 4.696 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.184 1.184 26 C -0.088 4.088 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.206 0.794 31 H 0.150 0.850 32 H 0.194 0.806 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.088 0.912 40 H 0.257 0.743 41 H 0.135 0.865 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -25.653 -23.184 9.416 35.836 hybrid contribution -0.083 -0.008 -2.233 2.234 sum -25.736 -23.192 7.184 35.381 Atomic orbital electron populations 1.20070 0.87342 1.03156 1.01898 1.20572 0.98544 0.91461 1.16119 1.24240 0.90148 1.01260 1.00338 1.77456 1.22486 0.90540 1.24185 1.48227 1.05904 1.04125 1.57416 1.21896 0.84425 0.96134 0.98210 1.21320 0.82503 0.81609 0.86825 1.90810 1.73685 1.31534 1.48149 1.47820 1.19590 1.36945 1.29928 1.22321 1.03115 0.89177 0.93349 1.21510 0.91734 0.98323 0.89140 1.21598 0.92157 0.97961 0.89537 1.45526 1.34420 1.40725 1.15758 1.20155 0.80457 0.78789 0.88704 1.90698 1.70612 1.53695 1.29625 1.23359 1.00593 1.04107 0.99827 1.85627 1.39309 1.47874 1.19969 1.23184 1.21463 1.27381 0.97559 0.89741 1.26160 0.97249 0.94157 1.01609 1.70186 1.29745 1.23721 1.31152 0.84976 0.77532 0.78504 0.76799 1.18790 1.20372 1.18405 1.23011 0.82755 1.01773 1.01293 0.92075 0.91611 0.90334 0.79448 0.84955 0.80581 0.88921 0.89758 0.88849 0.85500 0.90574 0.95297 0.91237 0.74293 0.86469 0.87334 0.91974 0.76644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.37 71.24 0.74 0.07 16 2 C -0.26 -4.24 6.10 -20.14 -0.12 -4.36 16 3 C 0.03 0.60 11.96 85.24 1.02 1.62 16 4 N -0.33 -9.10 11.64 -57.03 -0.66 -9.77 16 5 N -0.37 -7.06 3.40 -351.79 -1.20 -8.26 16 6 C 0.12 1.24 5.54 85.63 0.47 1.72 16 7 C 0.49 9.41 7.70 87.66 0.68 10.08 16 8 O -0.56 -18.01 15.28 -3.03 -0.05 -18.06 16 9 N -0.61 -7.84 2.87 -846.74 -2.43 -10.27 16 10 C 0.06 0.16 10.24 127.77 1.31 1.46 16 11 C 0.12 1.80 5.52 86.38 0.48 2.28 16 12 C 0.11 2.78 6.00 86.38 0.52 3.29 16 13 N -0.71 -18.81 5.56 -463.06 -2.57 -21.38 16 14 C 0.53 20.71 7.85 87.66 0.69 21.40 16 15 O -0.57 -28.01 15.86 -3.04 -0.05 -28.06 16 16 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.84 20.57 -56.49 -1.16 -10.00 16 18 C -0.55 -31.80 9.50 67.95 0.65 -31.16 16 19 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 22 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 C 0.06 0.76 11.36 83.54 0.95 1.71 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.19 3.47 8.06 -2.92 -0.02 3.45 16 31 H 0.13 0.92 7.40 -2.39 -0.02 0.91 16 32 H 0.18 -0.12 8.04 -2.38 -0.02 -0.14 16 33 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 34 H 0.08 0.23 8.07 -2.39 -0.02 0.22 16 35 H 0.09 -0.10 6.44 -2.38 -0.02 -0.12 16 36 H 0.13 0.98 8.07 -2.39 -0.02 0.97 16 37 H 0.08 1.47 7.42 -2.38 -0.02 1.45 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.42 7.65 8.47 -92.71 -0.79 6.86 16 41 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 42 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 43 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.22 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -100.29 394.36 2.70 -97.59 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.23 Total: 14.16 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 8.28 Total: 4.57 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -6.58 Total: -106.32 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -0.09 Total: -46.12 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Total: -100.29 2.70 -97.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.846 kcal (2) G-P(sol) polarization free energy of solvation -100.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds