Wall clock time and date at job start Sat Apr 11 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46839 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.46839 * 180.02562 * 12 11 10 14 14 C 1.46505 * 120.00265 * 89.99891 * 13 12 11 15 15 C 1.34775 * 120.00271 * 269.99756 * 13 12 11 16 16 O 1.21278 * 119.99734 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00456 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.47351 * 180.02562 * 17 15 13 19 19 C 1.76202 * 100.00069 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00126 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99689 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99965 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47372 * 60.00511 * 23 21 19 25 25 H 1.48511 * 109.47295 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47514 * 300.00055 * 23 21 19 27 27 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 28 28 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 29 29 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 30 30 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 31 31 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 32 32 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 33 33 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 34 34 H 0.96995 * 119.99675 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47110 * 300.00358 * 11 10 8 36 36 H 1.08998 * 109.47144 * 60.00085 * 11 10 8 37 37 H 1.09001 * 109.47361 * 299.99411 * 12 11 10 38 38 H 1.08998 * 109.47454 * 59.99944 * 12 11 10 39 39 H 1.09004 * 109.47084 * 89.99787 * 14 13 12 40 40 H 1.08992 * 109.47481 * 209.99618 * 14 13 12 41 41 H 1.08995 * 109.46849 * 330.00170 * 14 13 12 42 42 H 1.09003 * 109.47131 * 300.00430 * 17 15 13 43 43 H 1.09004 * 109.47078 * 59.99973 * 17 15 13 44 44 H 0.97007 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 8 1.7826 -2.1657 -2.3352 10 7 1.2207 -4.2040 -1.6633 11 6 0.9630 -4.6351 -3.0395 12 6 0.5152 -6.0980 -3.0402 13 7 0.2580 -6.5293 -4.4165 14 6 1.3381 -7.1148 -5.2146 15 6 -0.9721 -6.3874 -4.9485 16 8 -1.8661 -5.9023 -4.2880 17 6 -1.2368 -6.8315 -6.3640 18 16 -2.9681 -6.5108 -6.7833 19 6 -2.9970 -7.1069 -8.4411 20 1 -2.1000 -7.5134 -8.8845 21 6 -4.1725 -7.0543 -9.1772 22 7 -5.2656 -6.5585 -8.6369 23 14 -4.2029 -7.6857 -10.9350 24 1 -3.8340 -9.1241 -10.9508 25 1 -5.5669 -7.5178 -11.4978 26 1 -3.2320 -6.9166 -11.7541 27 1 -0.3634 -0.0007 1.0276 28 1 -0.3632 0.8905 -0.5132 29 1 -0.3634 -0.8895 -0.5146 30 1 1.9865 2.1118 0.0011 31 1 4.4818 -1.2699 -0.0013 32 1 2.6787 -3.1202 0.4322 33 1 0.9831 -2.6015 0.5880 34 1 1.0979 -4.8260 -0.9292 35 1 0.1786 -4.0150 -3.4736 36 1 1.8743 -4.5333 -3.6288 37 1 1.2993 -6.7183 -2.6061 38 1 -0.3962 -6.1994 -2.4511 39 1 1.3507 -8.1953 -5.0718 40 1 1.1744 -6.8896 -6.2684 41 1 2.2927 -6.6952 -4.8974 42 1 -0.5899 -6.2786 -7.0453 43 1 -1.0323 -7.8983 -6.4544 44 1 -6.0871 -6.5213 -9.1515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704229069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:37 Heat of formation + Delta-G solvation = -1.252487 kcal Electronic energy + Delta-G solvation = -25978.916992 eV Core-core repulsion = 22059.279854 eV Total energy + Delta-G solvation = -3919.637137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.42327 -40.12992 -39.47777 -36.17684 -34.79854 -34.37732 -32.46670 -32.22005 -31.00485 -28.98175 -27.74156 -26.67497 -26.38030 -25.51054 -23.29688 -21.76795 -21.48195 -20.21607 -19.34280 -17.97157 -17.74809 -17.59507 -16.79616 -16.49282 -16.00229 -15.67563 -15.48949 -15.08948 -14.83719 -14.73118 -14.31578 -14.02108 -13.89624 -13.78192 -13.32763 -13.31275 -13.08069 -13.04725 -12.78537 -12.66590 -12.60600 -12.49943 -12.44734 -11.91220 -11.61925 -11.08601 -11.06690 -10.80472 -10.75687 -10.19000 -9.86424 -9.80429 -9.55258 -9.51098 -9.09524 -8.77389 -8.51806 -8.29156 -6.55308 -6.25248 -3.96626 1.62978 2.05637 2.21333 2.58543 2.89387 2.95817 3.04644 3.20955 3.24035 3.26913 3.54060 4.09753 4.12301 4.16520 4.39341 4.41347 4.46086 4.55185 4.61242 4.87626 4.97077 4.98773 5.09946 5.10482 5.17851 5.23587 5.31619 5.47093 5.50569 5.58241 5.59229 5.65558 5.68738 5.82297 5.87523 6.05929 6.07499 6.43685 6.50595 6.80363 6.97412 7.32639 7.55575 7.67434 7.83474 8.31106 8.39077 9.19952 10.82112 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.001844 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.904623 B =15178.164971 C =15878.938153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.012 4.012 3 C -0.029 4.029 4 N -0.491 5.491 5 C 0.187 3.813 6 N -0.445 5.445 7 C 0.087 3.913 8 C 0.493 3.507 9 O -0.513 6.513 10 N -0.722 5.722 11 C 0.103 3.897 12 C 0.109 3.891 13 N -0.623 5.623 14 C 0.079 3.921 15 C 0.534 3.466 16 O -0.512 6.512 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.169 0.831 31 H 0.203 0.797 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.402 0.598 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 2.752 20.264 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C -0.176 4.176 4 N -0.208 5.208 5 C -0.095 4.095 6 N -0.129 5.129 7 C -0.041 4.041 8 C 0.276 3.724 9 O -0.387 6.387 10 N -0.376 5.376 11 C -0.022 4.022 12 C -0.015 4.015 13 N -0.360 5.360 14 C -0.064 4.064 15 C 0.322 3.678 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.186 0.814 31 H 0.219 0.781 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 16.737 4.472 20.522 26.856 hybrid contribution 0.402 -1.981 -1.699 2.641 sum 17.138 2.490 18.823 25.578 Atomic orbital electron populations 1.20237 0.87177 1.03852 1.02422 1.21259 0.94595 0.86639 1.10046 1.22026 0.88326 0.98441 1.08814 1.70258 1.22501 1.08725 1.19305 1.24863 0.86822 0.91902 1.05894 1.44860 1.07522 1.05176 1.55352 1.21640 1.04730 0.81816 0.95872 1.20732 0.78041 0.82368 0.91250 1.90841 1.49861 1.52405 1.45591 1.45756 1.69260 1.12610 1.09946 1.21830 1.01901 0.96288 0.82149 1.21417 1.02424 0.92976 0.84667 1.47750 1.10821 1.63912 1.13494 1.21820 0.89595 0.98237 0.96732 1.20443 0.81098 0.77452 0.88825 1.90703 1.43302 1.42595 1.61906 1.23562 1.07850 1.04182 0.94521 1.85399 0.99997 1.82060 1.15990 1.22807 0.99300 1.47855 0.98493 0.90947 1.24994 0.94607 0.94916 0.99047 1.70005 1.00569 1.42385 1.37270 0.86219 0.77482 0.79274 0.82494 1.19924 1.20783 1.19908 0.90882 0.89694 0.91839 0.81389 0.78063 0.85629 0.86062 0.76355 0.90415 0.91163 0.90157 0.89072 0.92401 0.90351 0.91333 0.89092 0.89107 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.08 36.01 0.36 -0.24 16 2 C -0.01 -0.12 6.95 -81.60 -0.57 -0.69 16 3 C -0.03 -0.33 11.79 -17.81 -0.21 -0.54 16 4 N -0.49 -6.16 11.25 -14.66 -0.16 -6.33 16 5 C 0.19 1.83 12.56 -90.37 -1.13 0.69 16 6 N -0.44 -3.96 2.24 -115.28 -0.26 -4.22 16 7 C 0.09 0.44 6.28 -5.20 -0.03 0.41 16 8 C 0.49 4.38 7.90 -10.98 -0.09 4.29 16 9 O -0.51 -7.48 16.43 5.56 0.09 -7.39 16 10 N -0.72 -4.96 5.56 -60.30 -0.33 -5.30 16 11 C 0.10 1.03 6.00 -4.04 -0.02 1.01 16 12 C 0.11 1.01 5.52 -4.04 -0.02 0.99 16 13 N -0.62 -7.67 2.87 -181.58 -0.52 -8.20 16 14 C 0.08 0.71 10.24 59.85 0.61 1.32 16 15 C 0.53 9.47 7.69 -10.99 -0.08 9.39 16 16 O -0.51 -10.97 15.44 5.56 0.09 -10.88 16 17 C -0.15 -2.94 4.71 36.00 0.17 -2.77 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 23 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 30 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 31 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 0.17 8.13 -51.93 -0.42 -0.25 16 33 H 0.12 0.35 8.02 -51.93 -0.42 -0.07 16 34 H 0.40 1.22 8.47 -40.82 -0.35 0.87 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 38 H 0.09 0.95 7.42 -51.93 -0.39 0.57 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 41 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 42 H 0.09 1.65 7.40 -51.91 -0.38 1.27 16 43 H 0.09 1.63 8.11 -51.91 -0.42 1.20 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -40.77 394.20 -8.95 -49.72 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.46 Total: -1.57 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.82 Total: 1.10 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.55 Total: -49.22 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -40.77 -8.95 -49.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704229069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.465 kcal (2) G-P(sol) polarization free energy of solvation -40.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds