Wall clock time and date at job start Sat Apr 11 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 O 1.21281 * 120.00529 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99867 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00027 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46839 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.46839 * 180.02562 * 12 11 10 14 14 C 1.46505 * 120.00265 * 89.99891 * 13 12 11 15 15 C 1.34775 * 120.00271 * 269.99756 * 13 12 11 16 16 O 1.21278 * 119.99734 * 0.02562 * 15 13 12 17 17 C 1.50699 * 120.00456 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.47351 * 180.02562 * 17 15 13 19 19 C 1.76202 * 100.00069 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00126 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99689 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99965 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47372 * 60.00511 * 23 21 19 25 25 H 1.48511 * 109.47295 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47514 * 300.00055 * 23 21 19 27 27 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 28 28 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 29 29 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 30 30 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 31 31 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 32 32 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 33 33 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 34 34 H 0.96995 * 119.99675 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47110 * 300.00358 * 11 10 8 36 36 H 1.08998 * 109.47144 * 60.00085 * 11 10 8 37 37 H 1.09001 * 109.47361 * 299.99411 * 12 11 10 38 38 H 1.08998 * 109.47454 * 59.99944 * 12 11 10 39 39 H 1.09004 * 109.47084 * 89.99787 * 14 13 12 40 40 H 1.08992 * 109.47481 * 209.99618 * 14 13 12 41 41 H 1.08995 * 109.46849 * 330.00170 * 14 13 12 42 42 H 1.09003 * 109.47131 * 300.00430 * 17 15 13 43 43 H 1.09004 * 109.47078 * 59.99973 * 17 15 13 44 44 H 0.97007 * 119.99687 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 8 1.7826 -2.1657 -2.3352 10 7 1.2207 -4.2040 -1.6633 11 6 0.9630 -4.6351 -3.0395 12 6 0.5152 -6.0980 -3.0402 13 7 0.2580 -6.5293 -4.4165 14 6 1.3381 -7.1148 -5.2146 15 6 -0.9721 -6.3874 -4.9485 16 8 -1.8661 -5.9023 -4.2880 17 6 -1.2368 -6.8315 -6.3640 18 16 -2.9681 -6.5108 -6.7833 19 6 -2.9970 -7.1069 -8.4411 20 1 -2.1000 -7.5134 -8.8845 21 6 -4.1725 -7.0543 -9.1772 22 7 -5.2656 -6.5585 -8.6369 23 14 -4.2029 -7.6857 -10.9350 24 1 -3.8340 -9.1241 -10.9508 25 1 -5.5669 -7.5178 -11.4978 26 1 -3.2320 -6.9166 -11.7541 27 1 -0.3634 -0.0007 1.0276 28 1 -0.3632 0.8905 -0.5132 29 1 -0.3634 -0.8895 -0.5146 30 1 1.9865 2.1118 0.0011 31 1 4.4818 -1.2699 -0.0013 32 1 2.6787 -3.1202 0.4322 33 1 0.9831 -2.6015 0.5880 34 1 1.0979 -4.8260 -0.9292 35 1 0.1786 -4.0150 -3.4736 36 1 1.8743 -4.5333 -3.6288 37 1 1.2993 -6.7183 -2.6061 38 1 -0.3962 -6.1994 -2.4511 39 1 1.3507 -8.1953 -5.0718 40 1 1.1744 -6.8896 -6.2684 41 1 2.2927 -6.6952 -4.8974 42 1 -0.5899 -6.2786 -7.0453 43 1 -1.0323 -7.8983 -6.4544 44 1 -6.0871 -6.5213 -9.1515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704229069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:37 Heat of formation + Delta-G solvation = -30.942121 kcal Electronic energy + Delta-G solvation = -25980.204431 eV Core-core repulsion = 22059.279854 eV Total energy + Delta-G solvation = -3920.924577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.11212 -41.08708 -40.53753 -37.22757 -35.73426 -35.05254 -34.59875 -32.88621 -32.06683 -30.09995 -28.49776 -27.70713 -27.35129 -27.20129 -24.20748 -22.48550 -22.20404 -21.00661 -20.53641 -19.56976 -18.65863 -18.27813 -18.05253 -17.39470 -16.90055 -16.85675 -16.74952 -16.42632 -15.96585 -15.75128 -15.48535 -15.06385 -14.74669 -14.61018 -14.45356 -14.33306 -14.25563 -13.96617 -13.64849 -13.58616 -13.32494 -13.28364 -13.19948 -13.17571 -13.06078 -12.87088 -12.66865 -12.39736 -11.75034 -11.57906 -11.14124 -10.97970 -10.95838 -10.51032 -10.29848 -10.29144 -9.80686 -9.25229 -8.69031 -8.35945 -6.14418 0.92608 1.23381 1.39534 1.42789 1.42965 1.49854 1.54064 1.67532 1.96324 2.19042 2.26092 2.41158 2.98203 3.24612 3.57515 3.67605 3.77266 3.78194 3.82233 3.89159 4.01044 4.12887 4.19476 4.22695 4.30973 4.35947 4.46767 4.50438 4.68064 4.69193 4.71740 4.82983 4.87951 4.95698 4.99465 5.17681 5.37750 5.40096 5.52110 5.78333 6.17037 6.18183 6.19129 6.41441 7.05211 7.06540 7.09454 7.10776 8.72969 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.001844 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.904623 B =15178.164971 C =15878.938153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.020 4.020 3 C -0.061 4.061 4 N -0.535 5.535 5 C 0.185 3.815 6 N -0.447 5.447 7 C 0.089 3.911 8 C 0.492 3.508 9 O -0.578 6.578 10 N -0.703 5.703 11 C 0.113 3.887 12 C 0.112 3.888 13 N -0.610 5.610 14 C 0.069 3.931 15 C 0.530 3.470 16 O -0.560 6.560 17 C -0.125 4.125 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.260 1.260 25 H -0.279 1.279 26 H -0.263 1.263 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.174 0.826 31 H 0.236 0.764 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.425 0.575 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.960 0.298 21.057 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.134 4.134 3 C -0.207 4.207 4 N -0.253 5.253 5 C -0.097 4.097 6 N -0.130 5.130 7 C -0.036 4.036 8 C 0.278 3.722 9 O -0.457 6.457 10 N -0.357 5.357 11 C -0.013 4.013 12 C -0.011 4.011 13 N -0.344 5.344 14 C -0.072 4.072 15 C 0.318 3.682 16 O -0.438 6.438 17 C -0.276 4.276 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.188 1.188 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.191 0.809 31 H 0.252 0.748 32 H 0.192 0.808 33 H 0.168 0.832 34 H 0.264 0.736 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.244 1.955 21.369 28.823 hybrid contribution -0.230 -1.239 -1.859 2.246 sum 19.015 0.716 19.509 27.252 Atomic orbital electron populations 1.20272 0.85790 1.03436 1.03770 1.21608 0.95602 0.86958 1.09238 1.22317 0.88637 0.99466 1.10252 1.70197 1.23333 1.10628 1.21111 1.25527 0.88159 0.91626 1.04416 1.45048 1.07083 1.06365 1.54521 1.22021 1.07847 0.80325 0.93417 1.21435 0.76598 0.81970 0.92238 1.90826 1.52803 1.54159 1.47865 1.45539 1.68021 1.12701 1.09473 1.21516 1.00155 0.95902 0.83680 1.21641 1.03553 0.93127 0.82777 1.47725 1.09559 1.62249 1.14860 1.22153 0.89530 0.99600 0.95946 1.20170 0.82606 0.77458 0.87969 1.90685 1.45388 1.45076 1.62683 1.23389 1.02198 1.05633 0.96424 1.85566 1.07362 1.82867 1.16918 1.23159 0.99952 1.47678 0.98622 0.89861 1.26136 0.94039 0.94924 1.04107 1.70178 1.01354 1.43895 1.39299 0.85010 0.77723 0.79171 0.76134 1.18443 1.20445 1.18785 0.88538 0.89795 0.92550 0.80894 0.74824 0.80758 0.83190 0.73638 0.95386 0.91143 0.84937 0.90247 0.90255 0.91117 0.88039 0.87682 0.87127 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.08 71.24 0.72 -0.38 16 2 C -0.02 -0.39 6.95 40.95 0.28 -0.10 16 3 C -0.06 -1.42 11.79 83.52 0.98 -0.44 16 4 N -0.53 -13.56 11.25 -200.31 -2.25 -15.81 16 5 C 0.18 3.38 12.56 180.26 2.26 5.64 16 6 N -0.45 -7.22 2.24 -518.62 -1.16 -8.38 16 7 C 0.09 0.62 6.28 85.63 0.54 1.15 16 8 C 0.49 7.86 7.90 87.65 0.69 8.55 16 9 O -0.58 -16.92 16.43 -3.03 -0.05 -16.97 16 10 N -0.70 -7.92 5.56 -463.06 -2.57 -10.49 16 11 C 0.11 2.12 6.00 86.38 0.52 2.64 16 12 C 0.11 1.76 5.52 86.38 0.48 2.24 16 13 N -0.61 -13.69 2.87 -846.78 -2.43 -16.12 16 14 C 0.07 0.97 10.24 127.77 1.31 2.28 16 15 C 0.53 18.74 7.69 87.66 0.67 19.41 16 16 O -0.56 -24.84 15.44 -3.02 -0.05 -24.89 16 17 C -0.13 -4.86 4.71 71.24 0.34 -4.52 16 18 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 19 C -0.55 -30.98 9.50 67.95 0.65 -30.33 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.72 5.49 84.86 0.47 1.19 16 22 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 29 H 0.06 0.90 7.96 -2.39 -0.02 0.89 16 30 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.18 -0.47 8.13 -2.38 -0.02 -0.49 16 33 H 0.15 0.25 8.02 -2.39 -0.02 0.23 16 34 H 0.43 0.89 8.47 -92.71 -0.79 0.10 16 35 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 0.80 8.07 -2.39 -0.02 0.79 16 38 H 0.08 1.52 7.42 -2.39 -0.02 1.50 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.07 1.14 6.44 -2.39 -0.02 1.12 16 41 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 42 H 0.11 3.74 7.40 -2.39 -0.02 3.73 16 43 H 0.11 3.81 8.11 -2.39 -0.02 3.79 16 44 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -97.04 394.20 2.77 -94.26 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.23 Total: 10.99 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 9.91 Total: 7.33 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -8.13 Total: -106.38 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -0.10 Total: -41.86 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -97.04 2.77 -94.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704229069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.323 kcal (2) G-P(sol) polarization free energy of solvation -97.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds