Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34128 * 125.98784 * 2 1 4 4 C 1.30503 * 109.25732 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69649 * 359.76401 * 4 3 2 6 6 H 0.96997 * 126.39798 * 180.27181 * 5 4 3 7 7 C 1.34666 * 125.99125 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.59080 * 359.96738 * 7 2 1 9 9 C 1.50692 * 109.47409 * 84.99748 * 8 7 2 10 10 O 1.21275 * 119.99970 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99795 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47121 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.46427 * 65.00309 * 13 12 11 15 15 C 1.53001 * 109.47065 * 184.99876 * 13 12 11 16 16 N 1.46497 * 109.47036 * 305.00021 * 13 12 11 17 17 C 1.34777 * 119.99525 * 154.99621 * 16 13 12 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 13 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09001 * 109.46604 * 270.00024 * 1 2 3 30 30 H 1.08995 * 109.47362 * 30.00116 * 1 2 3 31 31 H 1.09001 * 109.46814 * 150.00359 * 1 2 3 32 32 H 1.07999 * 125.65306 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46888 * 324.99378 * 8 7 2 34 34 H 1.09007 * 109.46663 * 205.00055 * 8 7 2 35 35 H 0.97001 * 120.00567 * 0.02562 * 11 9 8 36 36 H 1.08997 * 109.47305 * 60.00139 * 12 11 9 37 37 H 1.08994 * 109.46986 * 300.00101 * 12 11 9 38 38 H 1.08998 * 109.46617 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.47371 * 300.00160 * 15 13 12 40 40 H 1.09002 * 109.46839 * 60.00194 * 15 13 12 41 41 H 0.97000 * 120.00580 * 335.00367 * 16 13 12 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7096 -0.0006 5 7 3.5913 -0.6400 0.0043 6 1 4.3913 -1.1885 0.0088 7 6 2.2984 -1.0896 0.0005 8 6 1.8473 -2.5275 0.0018 9 6 1.5780 -2.9709 -1.4130 10 8 1.7364 -2.1955 -2.3320 11 7 1.1613 -4.2291 -1.6571 12 6 0.8990 -4.6600 -3.0326 13 6 0.4423 -6.1203 -3.0313 14 1 -0.5150 -6.2010 -2.5162 15 6 0.2884 -6.6078 -4.4734 16 7 1.4391 -6.9430 -2.3414 17 6 1.0732 -8.1084 -1.7718 18 8 -0.0810 -8.4762 -1.8307 19 6 2.0997 -8.9577 -1.0675 20 16 1.3064 -10.4503 -0.4202 21 6 2.6950 -11.2343 0.3293 22 1 3.6667 -10.7647 0.2899 23 6 2.5399 -12.4551 0.9713 24 7 1.3552 -13.0269 1.0207 25 14 4.0118 -13.2860 1.7665 26 1 4.1291 -12.8399 3.1780 27 1 3.8300 -14.7593 1.7265 28 1 5.2463 -12.9192 1.0272 29 1 -0.3632 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.4004 1.3688 -0.0003 33 1 0.9357 -2.6217 0.5918 34 1 2.6275 -3.1526 0.4363 35 1 1.0343 -4.8492 -0.9221 36 1 1.8103 -4.5652 -3.6230 37 1 0.1184 -4.0352 -3.4664 38 1 -0.0374 -7.6479 -4.4723 39 1 -0.4532 -5.9956 -4.9867 40 1 1.2457 -6.5269 -4.9883 41 1 2.3622 -6.6490 -2.2945 42 1 2.8834 -9.2388 -1.7711 43 1 2.5363 -8.3922 -0.2443 44 1 1.2468 -13.8802 1.4690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001705094075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = -29.010754 kcal Electronic energy + Delta-G solvation = -26105.318914 eV Core-core repulsion = 22184.478087 eV Total energy + Delta-G solvation = -3920.840826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.41036 -40.14275 -39.28299 -36.46422 -33.93277 -33.38602 -33.04945 -32.49714 -31.54255 -29.39338 -28.66680 -26.92005 -25.59813 -25.51647 -22.12034 -21.87085 -21.01307 -20.46515 -19.84320 -18.27389 -17.92679 -17.45227 -16.70538 -16.59032 -15.93312 -15.70197 -15.24778 -15.02021 -14.86991 -14.74757 -14.25802 -14.01670 -13.66616 -13.43605 -13.27443 -13.10983 -13.04575 -13.01280 -12.94095 -12.63128 -12.38338 -12.35302 -12.12513 -11.92349 -11.23663 -11.12276 -11.09484 -10.82372 -10.33683 -10.23285 -10.06868 -9.88986 -9.57225 -9.41526 -9.15423 -9.09201 -8.50152 -8.32237 -6.58108 -6.28610 -3.99816 1.65737 2.28092 2.66589 2.84426 2.88969 2.93476 3.05173 3.16800 3.22585 3.26005 3.59685 4.13547 4.18470 4.32480 4.38987 4.55115 4.60857 4.83440 4.95833 5.00797 5.02610 5.04908 5.06583 5.08301 5.28302 5.40198 5.47853 5.50015 5.57629 5.66128 5.76509 5.77100 5.85279 5.87828 5.96412 6.03260 6.12424 6.47797 6.48264 7.05367 7.13084 7.52158 7.54506 7.80005 7.86301 8.27970 8.46574 9.16867 10.78709 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002101 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.107675 B =13324.797674 C =14746.877585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.021 3.979 3 N -0.493 5.493 4 C 0.190 3.810 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.008 4.008 8 C -0.067 4.067 9 C 0.512 3.488 10 O -0.528 6.528 11 N -0.729 5.729 12 C 0.114 3.886 13 C 0.132 3.868 14 H 0.096 0.904 15 C -0.162 4.162 16 N -0.738 5.738 17 C 0.533 3.467 18 O -0.513 6.513 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.208 0.792 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.579 23.179 -3.954 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 N -0.212 5.212 4 C -0.094 4.094 5 N -0.166 5.166 6 H 0.256 0.744 7 C -0.124 4.124 8 C -0.108 4.108 9 C 0.298 3.702 10 O -0.404 6.404 11 N -0.383 5.383 12 C -0.010 4.010 13 C 0.026 3.974 14 H 0.114 0.886 15 C -0.221 4.221 16 N -0.393 5.393 17 C 0.319 3.681 18 O -0.387 6.387 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.225 0.775 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.315 23.807 -4.672 24.296 hybrid contribution 3.581 -1.413 0.887 3.950 sum 4.895 22.394 -3.785 23.233 Atomic orbital electron populations 1.20042 0.87801 1.02824 1.01972 1.20445 0.96402 0.87802 1.06163 1.70179 1.00589 1.30649 1.19815 1.24886 0.97363 0.81833 1.05345 1.43129 1.07925 1.08748 1.56782 0.74413 1.20114 0.84167 0.95255 1.12853 1.20033 1.04401 0.91050 0.95310 1.20513 0.76968 0.81610 0.91149 1.90754 1.50878 1.52701 1.46035 1.46003 1.69205 1.13269 1.09789 1.21707 1.02056 0.93980 0.83287 1.21147 0.93846 0.87848 0.94510 0.88590 1.22119 1.02225 1.02975 0.94745 1.46158 1.12253 1.22613 1.58295 1.20343 0.89593 0.80450 0.77692 1.90717 1.19748 1.70181 1.58016 1.23541 1.01305 1.03076 1.02584 1.85414 1.14046 1.13944 1.69795 1.22851 0.95761 1.08568 1.41325 0.90963 1.24995 0.96798 0.96145 0.95633 1.70011 1.22051 1.17178 1.40944 0.86169 0.81433 0.78469 0.79437 1.20253 1.20711 1.19720 0.91341 0.91038 0.91614 0.77546 0.86324 0.87897 0.75894 0.90882 0.89909 0.91001 0.91471 0.92233 0.76809 0.89238 0.89302 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.13 36.01 0.36 -0.25 16 2 C 0.02 0.24 7.09 -82.85 -0.59 -0.35 16 3 N -0.49 -5.84 11.25 -10.87 -0.12 -5.96 16 4 C 0.19 1.59 13.04 -90.37 -1.18 0.41 16 5 N -0.56 -4.15 6.15 -10.30 -0.06 -4.22 16 6 H 0.42 1.76 8.96 -40.82 -0.37 1.39 16 7 C -0.01 -0.08 5.73 -81.60 -0.47 -0.54 16 8 C -0.07 -0.44 5.81 -29.04 -0.17 -0.61 16 9 C 0.51 4.63 7.82 -10.99 -0.09 4.54 16 10 O -0.53 -6.96 16.03 5.56 0.09 -6.88 16 11 N -0.73 -5.50 5.39 -60.30 -0.32 -5.82 16 12 C 0.11 0.91 5.23 -4.04 -0.02 0.89 16 13 C 0.13 1.25 2.73 -67.93 -0.19 1.06 16 14 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 15 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 16 N -0.74 -7.94 4.52 -53.80 -0.24 -8.18 16 17 C 0.53 8.64 7.81 -10.98 -0.09 8.55 16 18 O -0.51 -10.44 15.53 5.55 0.09 -10.35 16 19 C -0.15 -2.82 6.16 36.01 0.22 -2.60 16 20 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 21 C -0.54 -14.70 9.50 30.94 0.29 -14.40 16 22 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 23 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 24 N -0.87 -25.42 13.22 55.49 0.73 -24.68 16 25 Si 0.92 20.75 29.55 -169.99 -5.02 15.73 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.55 7.89 -51.93 -0.41 0.14 16 32 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.59 8.03 -51.93 -0.42 0.18 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.41 2.67 8.14 -40.82 -0.33 2.34 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.40 3.36 8.60 -40.82 -0.35 3.01 16 42 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 43 H 0.09 1.46 8.14 -51.92 -0.42 1.03 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -38.42 394.38 -9.25 -47.67 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.46 Total: 2.99 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.64 Total: -2.52 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.02 Total: -48.86 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.42 -9.25 -47.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705094075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.659 kcal (2) G-P(sol) polarization free energy of solvation -38.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds