Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34128 * 125.98784 * 2 1 4 4 C 1.30503 * 109.25732 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69649 * 359.76401 * 4 3 2 6 6 H 0.96997 * 126.39798 * 180.27181 * 5 4 3 7 7 C 1.34666 * 125.99125 * 179.97438 * 2 1 3 8 8 C 1.50700 * 126.59080 * 359.96738 * 7 2 1 9 9 C 1.50692 * 109.47409 * 84.99748 * 8 7 2 10 10 O 1.21275 * 119.99970 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99823 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99795 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47121 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.46427 * 65.00309 * 13 12 11 15 15 C 1.53001 * 109.47065 * 184.99876 * 13 12 11 16 16 N 1.46497 * 109.47036 * 305.00021 * 13 12 11 17 17 C 1.34777 * 119.99525 * 154.99621 * 16 13 12 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 13 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.09001 * 109.46604 * 270.00024 * 1 2 3 30 30 H 1.08995 * 109.47362 * 30.00116 * 1 2 3 31 31 H 1.09001 * 109.46814 * 150.00359 * 1 2 3 32 32 H 1.07999 * 125.65306 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46888 * 324.99378 * 8 7 2 34 34 H 1.09007 * 109.46663 * 205.00055 * 8 7 2 35 35 H 0.97001 * 120.00567 * 0.02562 * 11 9 8 36 36 H 1.08997 * 109.47305 * 60.00139 * 12 11 9 37 37 H 1.08994 * 109.46986 * 300.00101 * 12 11 9 38 38 H 1.08998 * 109.46617 * 180.02562 * 15 13 12 39 39 H 1.09003 * 109.47371 * 300.00160 * 15 13 12 40 40 H 1.09002 * 109.46839 * 60.00194 * 15 13 12 41 41 H 0.97000 * 120.00580 * 335.00367 * 16 13 12 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7096 -0.0006 5 7 3.5913 -0.6400 0.0043 6 1 4.3913 -1.1885 0.0088 7 6 2.2984 -1.0896 0.0005 8 6 1.8473 -2.5275 0.0018 9 6 1.5780 -2.9709 -1.4130 10 8 1.7364 -2.1955 -2.3320 11 7 1.1613 -4.2291 -1.6571 12 6 0.8990 -4.6600 -3.0326 13 6 0.4423 -6.1203 -3.0313 14 1 -0.5150 -6.2010 -2.5162 15 6 0.2884 -6.6078 -4.4734 16 7 1.4391 -6.9430 -2.3414 17 6 1.0732 -8.1084 -1.7718 18 8 -0.0810 -8.4762 -1.8307 19 6 2.0997 -8.9577 -1.0675 20 16 1.3064 -10.4503 -0.4202 21 6 2.6950 -11.2343 0.3293 22 1 3.6667 -10.7647 0.2899 23 6 2.5399 -12.4551 0.9713 24 7 1.3552 -13.0269 1.0207 25 14 4.0118 -13.2860 1.7665 26 1 4.1291 -12.8399 3.1780 27 1 3.8300 -14.7593 1.7265 28 1 5.2463 -12.9192 1.0272 29 1 -0.3632 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 4.4004 1.3688 -0.0003 33 1 0.9357 -2.6217 0.5918 34 1 2.6275 -3.1526 0.4363 35 1 1.0343 -4.8492 -0.9221 36 1 1.8103 -4.5652 -3.6230 37 1 0.1184 -4.0352 -3.4664 38 1 -0.0374 -7.6479 -4.4723 39 1 -0.4532 -5.9956 -4.9867 40 1 1.2457 -6.5269 -4.9883 41 1 2.3622 -6.6490 -2.2945 42 1 2.8834 -9.2388 -1.7711 43 1 2.5363 -8.3922 -0.2443 44 1 1.2468 -13.8802 1.4690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705094075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -58.012978 kcal Electronic energy + Delta-G solvation = -26106.576544 eV Core-core repulsion = 22184.478087 eV Total energy + Delta-G solvation = -3922.098457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.03955 -41.05902 -40.32674 -37.44896 -34.81561 -34.56497 -34.03068 -33.71815 -32.60315 -30.18248 -29.84678 -27.64560 -27.60325 -26.21432 -22.94837 -22.64202 -21.70778 -21.59549 -20.50830 -19.85986 -18.80591 -18.21292 -17.91437 -17.47243 -16.86609 -16.76046 -16.52282 -16.33598 -15.94647 -15.91885 -15.34304 -14.86625 -14.75547 -14.52593 -14.28045 -14.01152 -13.94018 -13.79545 -13.68326 -13.64273 -13.26846 -13.14353 -13.06246 -12.98631 -12.93445 -12.88275 -12.58000 -12.05131 -11.70877 -11.12998 -11.09890 -10.93211 -10.92225 -10.75485 -10.24066 -10.19442 -10.13321 -9.15601 -8.63599 -8.33461 -6.10374 1.02684 1.28624 1.42862 1.48508 1.57769 1.60775 1.64143 2.04464 2.20708 2.26351 2.30465 2.43586 3.00978 3.33959 3.57946 3.62474 3.81949 3.98625 4.02248 4.06825 4.09630 4.26765 4.36224 4.40109 4.46690 4.55049 4.57267 4.59350 4.72753 4.75945 4.84930 4.99953 5.00854 5.08863 5.23363 5.25376 5.38797 5.43541 5.49076 5.82548 6.21079 6.45967 6.50519 6.59940 7.08517 7.15687 7.20188 7.26535 8.75363 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.002101 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.107675 B =13324.797674 C =14746.877585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.016 4.016 3 N -0.539 5.539 4 C 0.190 3.810 5 N -0.555 5.555 6 H 0.433 0.567 7 C -0.012 4.012 8 C -0.063 4.063 9 C 0.516 3.484 10 O -0.572 6.572 11 N -0.720 5.720 12 C 0.123 3.877 13 C 0.138 3.862 14 H 0.082 0.918 15 C -0.160 4.160 16 N -0.709 5.709 17 C 0.539 3.461 18 O -0.560 6.560 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.544 4.544 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.259 1.259 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.242 0.758 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.413 0.587 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.415 0.585 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.121 23.949 -3.687 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 N -0.260 5.260 4 C -0.094 4.094 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.128 4.128 8 C -0.104 4.104 9 C 0.303 3.697 10 O -0.451 6.451 11 N -0.373 5.373 12 C -0.001 4.001 13 C 0.033 3.967 14 H 0.100 0.900 15 C -0.218 4.218 16 N -0.364 5.364 17 C 0.325 3.675 18 O -0.437 6.437 19 C -0.282 4.282 20 S 0.077 5.923 21 C -0.692 4.692 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.193 1.193 27 H -0.206 1.206 28 H -0.183 1.183 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.258 0.742 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.250 0.750 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.252 0.748 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.899 24.591 -4.410 25.286 hybrid contribution 2.798 -1.518 0.718 3.264 sum 6.697 23.073 -3.692 24.307 Atomic orbital electron populations 1.20034 0.87373 1.02379 1.02570 1.20842 0.97308 0.88565 1.07710 1.70132 1.02237 1.31892 1.21755 1.25584 0.97450 0.82679 1.03666 1.43141 1.08111 1.08704 1.55927 0.72605 1.20410 0.84554 0.95950 1.11915 1.20132 1.06199 0.90013 0.94012 1.20842 0.75977 0.81271 0.91585 1.90746 1.52976 1.53850 1.47518 1.45937 1.68454 1.13090 1.09847 1.21589 1.02391 0.92398 0.83704 1.21174 0.92808 0.88420 0.94276 0.89974 1.22089 1.03516 1.01436 0.94790 1.45845 1.13469 1.20683 1.56442 1.19982 0.88296 0.81444 0.77737 1.90716 1.21409 1.71582 1.60017 1.23386 1.01372 0.99792 1.03670 1.85591 1.16783 1.19013 1.70877 1.23199 0.96079 1.08921 1.41035 0.89903 1.26092 0.99915 0.96949 0.96211 1.70178 1.24627 1.17711 1.42218 0.84992 0.77645 0.77005 0.78593 1.19282 1.20593 1.18253 0.90206 0.92216 0.91254 0.74164 0.84564 0.84972 0.75046 0.90224 0.89671 0.93919 0.89610 0.90858 0.74827 0.87599 0.86777 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.13 71.24 0.72 -0.46 16 2 C -0.02 -0.34 7.09 41.39 0.29 -0.05 16 3 N -0.54 -12.64 11.25 -188.31 -2.12 -14.76 16 4 C 0.19 2.92 13.04 180.26 2.35 5.27 16 5 N -0.55 -7.07 6.15 -186.49 -1.15 -8.22 16 6 H 0.43 2.51 8.96 -92.71 -0.83 1.68 16 7 C -0.01 -0.20 5.73 40.95 0.23 0.04 16 8 C -0.06 -0.67 5.81 29.10 0.17 -0.50 16 9 C 0.52 8.15 7.82 87.65 0.69 8.84 16 10 O -0.57 -14.25 16.03 -3.01 -0.05 -14.30 16 11 N -0.72 -8.92 5.39 -463.07 -2.49 -11.42 16 12 C 0.12 1.66 5.23 86.38 0.45 2.11 16 13 C 0.14 2.34 2.73 44.99 0.12 2.46 16 14 H 0.08 1.72 7.58 -2.38 -0.02 1.70 16 15 C -0.16 -2.72 9.48 71.98 0.68 -2.03 16 16 N -0.71 -13.54 4.52 -442.52 -2.00 -15.54 16 17 C 0.54 16.80 7.81 87.66 0.68 17.48 16 18 O -0.56 -22.94 15.53 -3.04 -0.05 -22.98 16 19 C -0.13 -4.57 6.16 71.24 0.44 -4.13 16 20 S -0.15 -7.81 20.57 -56.49 -1.16 -8.97 16 21 C -0.54 -29.63 9.50 67.95 0.65 -28.98 16 22 H 0.08 4.16 7.80 -2.91 -0.02 4.13 16 23 C 0.01 0.72 5.49 84.86 0.47 1.19 16 24 N -0.91 -54.37 13.22 21.65 0.29 -54.08 16 25 Si 1.00 42.02 29.55 68.60 2.03 44.05 16 26 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.13 7.89 -2.39 -0.02 1.12 16 32 H 0.24 1.50 8.06 -2.91 -0.02 1.47 16 33 H 0.14 0.99 8.03 -2.39 -0.02 0.97 16 34 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.41 4.17 8.14 -92.71 -0.75 3.42 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.41 5.47 8.60 -92.71 -0.80 4.67 16 42 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.11 3.42 8.14 -2.40 -0.02 3.40 16 44 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -87.06 394.38 -0.09 -87.15 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -1.33 Total: 17.85 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 7.95 Total: 1.23 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -7.47 Total: -104.01 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.10 Total: -37.29 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.16 Total: -8.97 kcal Total: -87.06 -0.09 -87.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705094075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.135 kcal (2) G-P(sol) polarization free energy of solvation -87.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds