Wall clock time and date at job start Sat Apr 11 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29957 * 125.30341 * 2 1 4 4 O 1.41880 * 107.41133 * 180.24881 * 3 2 1 5 5 N 1.41877 * 106.38533 * 359.72194 * 4 3 2 6 6 C 1.29945 * 107.41868 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.30820 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.46784 * 90.02105 * 7 6 5 9 9 C 1.48554 * 110.99982 * 69.87791 * 8 7 6 10 10 C 1.54380 * 104.59489 * 200.95937 * 9 8 7 11 11 C 1.54255 * 105.06055 * 23.85178 * 10 9 8 12 12 H 1.09003 * 110.32359 * 241.00708 * 11 10 9 13 13 N 1.46497 * 110.32259 * 118.90035 * 11 10 9 14 14 C 1.34778 * 120.00309 * 86.45667 * 13 11 10 15 15 O 1.21276 * 119.99491 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99778 * 180.02562 * 14 13 11 17 17 S 1.81004 * 109.46742 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99832 * 180.27629 * 18 17 16 21 21 N 1.31631 * 119.99781 * 179.72124 * 20 18 17 22 22 Si 1.86800 * 119.99986 * 359.71904 * 20 18 17 23 23 H 1.48510 * 109.47082 * 90.00406 * 22 20 18 24 24 H 1.48504 * 109.47159 * 210.00067 * 22 20 18 25 25 H 1.48489 * 109.47333 * 330.00310 * 22 20 18 26 26 C 1.48560 * 111.00081 * 314.45809 * 8 7 6 27 27 H 1.09000 * 110.41497 * 40.26130 * 26 8 7 28 28 C 1.53004 * 110.41167 * 277.81829 * 26 8 7 29 29 H 1.09004 * 109.47122 * 270.22114 * 1 2 3 30 30 H 1.09001 * 109.47125 * 30.21609 * 1 2 3 31 31 H 1.08990 * 109.47610 * 150.22114 * 1 2 3 32 32 H 1.08996 * 109.46595 * 330.02626 * 7 6 5 33 33 H 1.08997 * 109.47137 * 210.02258 * 7 6 5 34 34 H 1.09007 * 110.41353 * 82.17757 * 9 8 7 35 35 H 1.09006 * 110.51193 * 319.78481 * 9 8 7 36 36 H 1.09006 * 110.31977 * 264.95237 * 10 9 8 37 37 H 1.09002 * 110.41124 * 142.79591 * 10 9 8 38 38 H 0.97005 * 119.99622 * 266.44866 * 13 11 10 39 39 H 1.09000 * 109.47396 * 59.99696 * 16 14 13 40 40 H 1.09001 * 109.47080 * 299.99119 * 16 14 13 41 41 H 0.97000 * 119.99427 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.47132 * 304.83194 * 28 26 8 43 43 H 1.08997 * 109.46605 * 64.82916 * 28 26 8 44 44 H 1.08992 * 109.47032 * 184.82451 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6247 -0.0059 5 7 3.5709 -0.7936 -0.0027 6 6 2.3213 -1.1498 0.0038 7 6 1.8208 -2.5713 0.0085 8 7 1.6643 -3.0306 1.3951 9 6 0.5293 -2.3400 2.0598 10 6 0.8133 -2.4899 3.5698 11 6 2.3378 -2.7013 3.6720 12 1 2.5564 -3.6685 4.1246 13 7 2.9496 -1.6244 4.4544 14 6 3.0147 -1.7203 5.7972 15 8 2.5665 -2.6978 6.3577 16 6 3.6435 -0.6121 6.6020 17 16 3.5787 -1.0328 8.3613 18 6 4.3570 0.3923 9.0455 19 1 4.7027 1.1830 8.3960 20 6 4.5314 0.4960 10.4185 21 7 5.1177 1.5581 10.9292 22 14 3.9339 -0.8719 11.5418 23 1 5.0194 -1.8679 11.7294 24 1 3.5536 -0.3004 12.8586 25 1 2.7542 -1.5346 10.9304 26 6 2.8468 -2.6614 2.2150 27 1 3.1888 -1.6585 1.9592 28 6 3.9730 -3.6776 2.0152 29 1 -0.3633 0.0040 1.0277 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3634 -0.8918 -0.5103 32 1 2.5375 -3.2104 -0.5072 33 1 0.8585 -2.6194 -0.5010 34 1 -0.4134 -2.8220 1.8005 35 1 0.5064 -1.2867 1.7800 36 1 0.2834 -3.3541 3.9707 37 1 0.5198 -1.5858 4.1034 38 1 3.3079 -0.8424 4.0060 39 1 3.0984 0.3160 6.4304 40 1 4.6821 -0.4854 6.2964 41 1 5.2392 1.6306 11.8888 42 1 3.6020 -4.6789 2.2341 43 1 4.3205 -3.6366 0.9829 44 1 4.7989 -3.4413 2.6862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707242914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:45 Heat of formation + Delta-G solvation = 70.690025 kcal Electronic energy + Delta-G solvation = -27630.101845 eV Core-core repulsion = 23713.584369 eV Total energy + Delta-G solvation = -3916.517476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26950 -40.24663 -38.70956 -35.41097 -34.42075 -33.44927 -32.44711 -31.76327 -31.28021 -29.38809 -29.18167 -26.51420 -25.67455 -25.36374 -23.15656 -21.92143 -21.46676 -20.53223 -19.96840 -17.94238 -17.51624 -17.31740 -16.53066 -16.25173 -15.94715 -15.53561 -15.08197 -15.05532 -14.94579 -14.82782 -14.59333 -13.97322 -13.83374 -13.69903 -13.57612 -13.28928 -12.94963 -12.80765 -12.58704 -12.43241 -12.41962 -12.24405 -11.96381 -11.85683 -11.68396 -11.47617 -11.29575 -11.27090 -11.15519 -11.01648 -10.84680 -10.61228 -9.87114 -9.59215 -9.28078 -9.08025 -8.99996 -8.52272 -6.93315 -6.29598 -4.01703 0.00645 1.37503 2.14173 2.58801 2.69563 2.90107 3.13010 3.27002 3.32380 3.45101 3.49420 3.68269 3.99068 4.04555 4.14611 4.32192 4.41233 4.56859 4.60673 4.67679 4.71123 4.73846 4.76782 4.87228 4.98129 4.99182 5.05487 5.09392 5.23313 5.27366 5.34312 5.40423 5.47748 5.59503 5.72954 5.81675 5.83591 5.94293 5.98892 6.10576 6.25397 6.41060 6.54299 7.51013 7.93511 8.41188 8.42412 9.16381 10.79730 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002610 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.885396 B =10723.610356 C =11348.600085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.074 3.926 3 N -0.271 5.271 4 O 0.028 5.972 5 N -0.255 5.255 6 C 0.037 3.963 7 C 0.107 3.893 8 N -0.480 5.480 9 C 0.015 3.985 10 C -0.137 4.137 11 C 0.148 3.852 12 H 0.104 0.896 13 N -0.733 5.733 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.125 4.125 17 S -0.139 6.139 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.044 3.956 27 H 0.063 0.937 28 C -0.134 4.134 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.396 0.604 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 -8.119 -27.541 30.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 N -0.016 5.016 4 O -0.114 6.114 5 N 0.000 5.000 6 C -0.148 4.148 7 C -0.023 4.023 8 N -0.203 5.203 9 C -0.113 4.113 10 C -0.176 4.176 11 C 0.042 3.958 12 H 0.122 0.878 13 N -0.387 5.387 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.276 4.276 17 S 0.087 5.913 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.065 4.065 27 H 0.080 0.920 28 C -0.192 4.192 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.065 -9.408 -26.464 30.188 hybrid contribution 0.240 1.830 -0.272 1.866 sum -10.826 -7.578 -26.737 29.824 Atomic orbital electron populations 1.20760 0.84236 1.05519 1.05121 1.24647 1.00405 0.88931 0.96842 1.79997 0.89140 1.19547 1.12868 1.93445 1.20165 1.13557 1.84189 1.80012 1.17540 0.91457 1.10944 1.25583 0.90252 1.00920 0.98060 1.21402 1.03247 0.84411 0.93289 1.65758 1.03715 1.50882 0.99965 1.23545 0.95282 0.97697 0.94760 1.22792 0.96336 1.03751 0.94738 1.21627 0.91794 0.92763 0.89598 0.87823 1.46108 1.63168 1.22690 1.06717 1.20279 0.78344 0.87833 0.81549 1.90699 1.46022 1.32055 1.70103 1.23291 1.03821 0.99693 1.00780 1.84755 1.79737 1.30988 0.95848 1.22320 1.44257 1.04668 0.95734 0.89408 1.24717 0.93619 0.95744 0.97227 1.69942 1.40950 1.27676 1.13100 0.86731 0.81650 0.82483 0.80957 1.19175 1.19921 1.15931 1.23134 0.91723 0.99284 0.92338 0.91957 1.21678 0.96546 0.98904 1.02053 0.88052 0.88870 0.88581 0.87178 0.87008 0.88794 0.92896 0.89706 0.90304 0.76960 0.88544 0.88489 0.91920 0.91179 0.92290 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.09 36.01 0.33 0.03 16 2 C 0.07 0.53 6.43 -82.38 -0.53 0.00 16 3 N -0.27 -2.82 12.98 33.74 0.44 -2.39 16 4 O 0.03 0.34 13.71 12.02 0.16 0.50 16 5 N -0.26 -2.59 11.69 33.74 0.39 -2.20 16 6 C 0.04 0.27 4.56 -82.38 -0.38 -0.11 16 7 C 0.11 0.51 5.78 -4.97 -0.03 0.48 16 8 N -0.48 -3.17 5.33 -223.56 -1.19 -4.36 16 9 C 0.01 0.09 6.23 -2.18 -0.01 0.07 16 10 C -0.14 -1.27 6.78 -25.35 -0.17 -1.44 16 11 C 0.15 1.62 2.91 -66.55 -0.19 1.43 16 12 H 0.10 1.34 7.36 -51.93 -0.38 0.96 16 13 N -0.73 -9.38 5.04 -52.47 -0.26 -9.64 16 14 C 0.53 9.32 7.84 -10.99 -0.09 9.24 16 15 O -0.51 -10.77 15.56 5.56 0.09 -10.68 16 16 C -0.13 -2.44 6.16 36.01 0.22 -2.22 16 17 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 18 C -0.52 -15.15 10.04 30.94 0.31 -14.83 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.74 13.97 55.49 0.78 -25.96 16 22 Si 0.86 21.83 27.73 -169.99 -4.71 17.11 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 26 C 0.04 0.39 2.31 -66.07 -0.15 0.23 16 27 H 0.06 0.61 4.82 -51.93 -0.25 0.36 16 28 C -0.13 -1.16 9.33 37.16 0.35 -0.82 16 29 H 0.10 0.26 6.61 -51.93 -0.34 -0.08 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.04 7.13 -51.93 -0.37 -0.33 16 32 H 0.11 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.11 0.21 7.07 -51.93 -0.37 -0.16 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.28 3.41 -51.93 -0.18 0.11 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 38 H 0.40 4.42 8.34 -40.82 -0.34 4.08 16 39 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 40 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.47 7.98 -51.93 -0.41 0.05 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -35.53 370.53 -7.17 -42.70 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.01 Total: 0.07 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.44 Total: -5.22 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.15 Total: -44.54 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.25 Total: -10.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.53 -7.17 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707242914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.390 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds