Wall clock time and date at job start Sat Apr 11 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29957 * 125.30341 * 2 1 4 4 O 1.41880 * 107.41133 * 180.24881 * 3 2 1 5 5 N 1.41877 * 106.38533 * 359.72194 * 4 3 2 6 6 C 1.29945 * 107.41868 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.30820 * 179.97438 * 6 5 4 8 8 N 1.46905 * 109.46784 * 90.02105 * 7 6 5 9 9 C 1.48554 * 110.99982 * 69.87791 * 8 7 6 10 10 C 1.54380 * 104.59489 * 200.95937 * 9 8 7 11 11 C 1.54255 * 105.06055 * 23.85178 * 10 9 8 12 12 H 1.09003 * 110.32359 * 241.00708 * 11 10 9 13 13 N 1.46497 * 110.32259 * 118.90035 * 11 10 9 14 14 C 1.34778 * 120.00309 * 86.45667 * 13 11 10 15 15 O 1.21276 * 119.99491 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99778 * 180.02562 * 14 13 11 17 17 S 1.81004 * 109.46742 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99832 * 180.27629 * 18 17 16 21 21 N 1.31631 * 119.99781 * 179.72124 * 20 18 17 22 22 Si 1.86800 * 119.99986 * 359.71904 * 20 18 17 23 23 H 1.48510 * 109.47082 * 90.00406 * 22 20 18 24 24 H 1.48504 * 109.47159 * 210.00067 * 22 20 18 25 25 H 1.48489 * 109.47333 * 330.00310 * 22 20 18 26 26 C 1.48560 * 111.00081 * 314.45809 * 8 7 6 27 27 H 1.09000 * 110.41497 * 40.26130 * 26 8 7 28 28 C 1.53004 * 110.41167 * 277.81829 * 26 8 7 29 29 H 1.09004 * 109.47122 * 270.22114 * 1 2 3 30 30 H 1.09001 * 109.47125 * 30.21609 * 1 2 3 31 31 H 1.08990 * 109.47610 * 150.22114 * 1 2 3 32 32 H 1.08996 * 109.46595 * 330.02626 * 7 6 5 33 33 H 1.08997 * 109.47137 * 210.02258 * 7 6 5 34 34 H 1.09007 * 110.41353 * 82.17757 * 9 8 7 35 35 H 1.09006 * 110.51193 * 319.78481 * 9 8 7 36 36 H 1.09006 * 110.31977 * 264.95237 * 10 9 8 37 37 H 1.09002 * 110.41124 * 142.79591 * 10 9 8 38 38 H 0.97005 * 119.99622 * 266.44866 * 13 11 10 39 39 H 1.09000 * 109.47396 * 59.99696 * 16 14 13 40 40 H 1.09001 * 109.47080 * 299.99119 * 16 14 13 41 41 H 0.97000 * 119.99427 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.47132 * 304.83194 * 28 26 8 43 43 H 1.08997 * 109.46605 * 64.82916 * 28 26 8 44 44 H 1.08992 * 109.47032 * 184.82451 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6247 -0.0059 5 7 3.5709 -0.7936 -0.0027 6 6 2.3213 -1.1498 0.0038 7 6 1.8208 -2.5713 0.0085 8 7 1.6643 -3.0306 1.3951 9 6 0.5293 -2.3400 2.0598 10 6 0.8133 -2.4899 3.5698 11 6 2.3378 -2.7013 3.6720 12 1 2.5564 -3.6685 4.1246 13 7 2.9496 -1.6244 4.4544 14 6 3.0147 -1.7203 5.7972 15 8 2.5665 -2.6978 6.3577 16 6 3.6435 -0.6121 6.6020 17 16 3.5787 -1.0328 8.3613 18 6 4.3570 0.3923 9.0455 19 1 4.7027 1.1830 8.3960 20 6 4.5314 0.4960 10.4185 21 7 5.1177 1.5581 10.9292 22 14 3.9339 -0.8719 11.5418 23 1 5.0194 -1.8679 11.7294 24 1 3.5536 -0.3004 12.8586 25 1 2.7542 -1.5346 10.9304 26 6 2.8468 -2.6614 2.2150 27 1 3.1888 -1.6585 1.9592 28 6 3.9730 -3.6776 2.0152 29 1 -0.3633 0.0040 1.0277 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3634 -0.8918 -0.5103 32 1 2.5375 -3.2104 -0.5072 33 1 0.8585 -2.6194 -0.5010 34 1 -0.4134 -2.8220 1.8005 35 1 0.5064 -1.2867 1.7800 36 1 0.2834 -3.3541 3.9707 37 1 0.5198 -1.5858 4.1034 38 1 3.3079 -0.8424 4.0060 39 1 3.0984 0.3160 6.4304 40 1 4.6821 -0.4854 6.2964 41 1 5.2392 1.6306 11.8888 42 1 3.6020 -4.6789 2.2341 43 1 4.3205 -3.6366 0.9829 44 1 4.7989 -3.4413 2.6862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707242914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:45 Heat of formation + Delta-G solvation = 42.391068 kcal Electronic energy + Delta-G solvation = -27631.328980 eV Core-core repulsion = 23713.584369 eV Total energy + Delta-G solvation = -3917.744611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.87352 -41.22297 -39.79268 -36.25357 -35.11368 -34.70492 -34.26263 -32.47828 -32.19262 -30.48793 -29.78573 -27.91289 -27.12756 -26.18141 -23.73746 -22.65920 -22.28422 -21.47499 -20.82503 -19.87127 -18.33254 -18.02313 -17.83202 -17.21482 -17.05391 -16.75919 -16.23660 -16.19396 -15.95818 -15.57210 -15.39809 -15.20099 -14.92393 -14.74475 -14.44679 -14.14383 -14.06375 -13.82924 -13.41067 -13.37504 -13.14947 -13.09085 -13.02871 -12.87864 -12.77343 -12.66920 -12.50728 -12.33252 -12.16949 -11.97862 -11.87959 -11.73353 -11.56867 -11.19719 -11.06604 -10.59287 -10.22289 -9.83290 -9.03403 -8.54348 -6.26019 -0.61248 0.85109 0.94157 1.30145 1.43656 1.46079 1.47345 1.52669 2.01357 2.08963 2.23035 2.64359 2.72675 2.83838 2.88613 3.27980 3.52915 3.64289 3.77269 3.89909 3.91323 4.05779 4.14014 4.19321 4.22177 4.34833 4.35906 4.39204 4.52863 4.59017 4.64117 4.70693 4.77020 4.82541 4.94532 5.00664 5.08855 5.13519 5.24045 5.27259 5.64149 5.67502 5.72216 5.81408 6.08093 6.29573 6.90237 7.07393 8.58410 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002610 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.885396 B =10723.610356 C =11348.600085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.091 3.909 3 N -0.307 5.307 4 O -0.023 6.023 5 N -0.280 5.280 6 C 0.052 3.948 7 C 0.105 3.895 8 N -0.475 5.475 9 C 0.021 3.979 10 C -0.138 4.138 11 C 0.141 3.859 12 H 0.084 0.916 13 N -0.711 5.711 14 C 0.541 3.459 15 O -0.552 6.552 16 C -0.115 4.115 17 S -0.165 6.165 18 C -0.533 4.533 19 H 0.058 0.942 20 C 0.045 3.955 21 N -0.918 5.918 22 Si 0.917 3.083 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.235 1.235 26 C 0.052 3.948 27 H 0.054 0.946 28 C -0.132 4.132 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.156 0.844 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.406 0.594 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.278 0.722 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.107 -9.886 -29.526 34.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.093 4.093 3 N -0.055 5.055 4 O -0.156 6.156 5 N -0.028 5.028 6 C -0.134 4.134 7 C -0.024 4.024 8 N -0.198 5.198 9 C -0.106 4.106 10 C -0.177 4.177 11 C 0.036 3.964 12 H 0.102 0.898 13 N -0.365 5.365 14 C 0.327 3.673 15 O -0.429 6.429 16 C -0.266 4.266 17 S 0.062 5.938 18 C -0.681 4.681 19 H 0.077 0.923 20 C -0.160 4.160 21 N -0.556 5.556 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.182 1.182 25 H -0.158 1.158 26 C -0.057 4.057 27 H 0.072 0.928 28 C -0.190 4.190 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.242 0.758 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.633 -11.127 -28.501 33.496 hybrid contribution 0.993 2.360 0.182 2.567 sum -12.640 -8.767 -28.319 32.227 Atomic orbital electron populations 1.21101 0.80913 1.07696 1.06333 1.25381 1.02104 0.87935 0.93833 1.79975 0.88848 1.21177 1.15524 1.93417 1.21666 1.14686 1.85807 1.79980 1.19378 0.90759 1.12653 1.26116 0.89485 1.02079 0.95737 1.21789 1.05732 0.82548 0.92357 1.65770 1.02646 1.50890 1.00530 1.23629 0.96198 0.98757 0.91980 1.22761 0.94433 1.03074 0.97433 1.21821 0.93379 0.90902 0.90335 0.89829 1.45916 1.61897 1.23457 1.05181 1.19840 0.78078 0.86609 0.82792 1.90688 1.47976 1.33160 1.71088 1.23285 1.05180 1.01192 0.96938 1.84603 1.79247 1.29407 1.00558 1.22473 1.44358 1.05319 0.95934 0.92327 1.25606 0.93707 0.98005 0.98724 1.70024 1.42118 1.29482 1.13940 0.85838 0.81220 0.79644 0.79490 1.18629 1.18172 1.15836 1.22980 0.92697 0.98878 0.91173 0.92795 1.21643 0.96107 0.98981 1.02224 0.86921 0.88334 0.84901 0.86468 0.82627 0.85538 0.91897 0.89995 0.91422 0.75776 0.87189 0.87422 0.91288 0.90910 0.91366 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.17 9.09 71.24 0.65 0.48 16 2 C 0.09 1.06 6.43 43.49 0.28 1.34 16 3 N -0.31 -6.27 12.98 -47.15 -0.61 -6.88 16 4 O -0.02 -0.58 13.71 70.16 0.96 0.38 16 5 N -0.28 -5.52 11.69 -47.16 -0.55 -6.07 16 6 C 0.05 0.62 4.56 43.49 0.20 0.82 16 7 C 0.11 0.56 5.78 85.56 0.49 1.05 16 8 N -0.48 -4.50 5.33 -861.22 -4.59 -9.09 16 9 C 0.02 0.17 6.23 86.45 0.54 0.70 16 10 C -0.14 -2.26 6.78 31.49 0.21 -2.04 16 11 C 0.14 2.92 2.91 45.89 0.13 3.05 16 12 H 0.08 2.13 7.36 -2.39 -0.02 2.11 16 13 N -0.71 -17.69 5.04 -438.31 -2.21 -19.90 16 14 C 0.54 18.72 7.84 87.66 0.69 19.41 16 15 O -0.55 -23.07 15.56 -3.02 -0.05 -23.11 16 16 C -0.11 -4.47 6.16 71.24 0.44 -4.03 16 17 S -0.16 -8.39 18.55 -56.49 -1.05 -9.43 16 18 C -0.53 -31.57 10.04 67.95 0.68 -30.89 16 19 H 0.06 3.69 8.03 -2.91 -0.02 3.66 16 20 C 0.04 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -56.61 13.97 21.65 0.30 -56.30 16 22 Si 0.92 45.19 27.73 68.60 1.90 47.09 16 23 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.23 -11.46 6.74 99.48 0.67 -10.79 16 26 C 0.05 0.82 2.31 45.06 0.10 0.92 16 27 H 0.05 0.98 4.82 -2.39 -0.01 0.97 16 28 C -0.13 -2.13 9.33 71.98 0.67 -1.46 16 29 H 0.11 0.05 6.61 -2.38 -0.02 0.03 16 30 H 0.10 0.15 8.14 -2.39 -0.02 0.14 16 31 H 0.13 -0.74 7.13 -2.39 -0.02 -0.75 16 32 H 0.12 0.58 8.00 -2.39 -0.02 0.56 16 33 H 0.16 -0.46 7.07 -2.39 -0.02 -0.48 16 34 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.06 0.39 3.41 -2.38 -0.01 0.38 16 36 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.07 1.28 7.95 -2.39 -0.02 1.26 16 38 H 0.41 8.72 8.34 -92.70 -0.77 7.95 16 39 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 41 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 0.97 7.98 -2.39 -0.02 0.95 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -81.15 370.53 -0.10 -81.25 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.24 Total: 9.58 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.56 Total: -7.50 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -7.66 Total: -98.25 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.92 Total: -22.73 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.43 kcal Total: -81.15 -0.10 -81.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707242914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.640 kcal (2) G-P(sol) polarization free energy of solvation -81.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds