Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31240 * 124.05750 * 2 1 4 4 N 1.27342 * 120.03896 * 180.34557 * 3 2 1 5 5 S 1.56636 * 109.73842 * 359.68917 * 4 3 2 6 6 C 1.38250 * 124.05670 * 179.79124 * 2 1 3 7 7 C 1.47171 * 128.47402 * 359.97438 * 6 2 1 8 8 O 1.21626 * 120.00105 * 352.18431 * 7 6 2 9 9 N 1.34771 * 120.00231 * 172.46189 * 7 6 2 10 10 C 1.46922 * 120.63082 * 169.38397 * 9 7 6 11 11 C 1.53632 * 108.53919 * 126.37438 * 10 9 7 12 12 C 1.53042 * 109.24363 * 54.85698 * 11 10 9 13 13 N 1.46497 * 109.45805 * 178.49406 * 12 11 10 14 14 C 1.36933 * 120.00341 * 60.06441 * 13 12 11 15 15 H 1.08001 * 120.00232 * 327.48735 * 14 13 12 16 16 C 1.38813 * 119.99762 * 147.47982 * 14 13 12 17 17 N 1.31615 * 120.00424 * 334.00872 * 16 14 13 18 18 Si 1.86808 * 119.99839 * 154.01170 * 16 14 13 19 19 H 1.48501 * 109.47047 * 89.99713 * 18 16 14 20 20 H 1.48501 * 109.46925 * 210.00024 * 18 16 14 21 21 H 1.48506 * 109.46783 * 330.00010 * 18 16 14 22 22 C 1.46502 * 119.99758 * 240.06724 * 13 12 11 23 23 C 1.52998 * 109.47085 * 83.93886 * 22 13 12 24 24 O 1.42899 * 109.46975 * 65.00610 * 23 22 13 25 25 C 1.53046 * 109.53439 * 298.51085 * 12 11 10 26 26 C 1.46929 * 120.62821 * 349.67491 * 9 7 6 27 27 H 1.08995 * 109.47335 * 270.21025 * 1 2 3 28 28 H 1.09004 * 109.47299 * 30.21196 * 1 2 3 29 29 H 1.09000 * 109.47152 * 150.20747 * 1 2 3 30 30 H 1.09005 * 109.58860 * 246.20059 * 10 9 7 31 31 H 1.08992 * 109.59075 * 6.63180 * 10 9 7 32 32 H 1.09000 * 109.63353 * 294.86496 * 11 10 9 33 33 H 1.08999 * 109.43079 * 174.72405 * 11 10 9 34 34 H 1.08993 * 109.45943 * 58.53207 * 12 11 10 35 35 H 0.97003 * 120.00240 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47376 * 203.94259 * 22 13 12 37 37 H 1.09007 * 109.47077 * 323.94457 * 22 13 12 38 38 H 1.09005 * 109.46899 * 184.99821 * 23 22 13 39 39 H 1.08992 * 109.47540 * 305.00215 * 23 22 13 40 40 H 0.96700 * 113.99980 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.49975 * 301.41229 * 25 12 11 42 42 H 1.08999 * 109.51861 * 181.33598 * 25 12 11 43 43 H 1.09001 * 109.58439 * 353.36448 * 26 9 7 44 44 H 1.08998 * 109.59200 * 113.65525 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0066 5 16 3.9366 -0.5097 -0.0059 6 6 2.2812 -1.1454 0.0042 7 6 1.8394 -2.5492 0.0098 8 8 0.6615 -2.8155 0.1545 9 7 2.7407 -3.5399 -0.1398 10 6 2.3600 -4.9397 0.0932 11 6 2.7344 -5.7611 -1.1500 12 6 4.2189 -5.5573 -1.4610 13 7 4.5894 -6.3668 -2.6244 14 6 3.9690 -6.1606 -3.8276 15 1 2.9364 -5.8453 -3.8558 16 6 4.6674 -6.3566 -5.0112 17 7 5.9777 -6.2334 -5.0303 18 14 3.7475 -6.7951 -6.5768 19 1 3.3715 -5.5509 -7.2949 20 1 4.6190 -7.6249 -7.4470 21 1 2.5208 -7.5582 -6.2328 22 6 5.6237 -7.3969 -2.5006 23 6 4.9991 -8.6842 -1.9589 24 8 4.0658 -9.1982 -2.9112 25 6 4.4803 -4.0800 -1.7635 26 6 4.1243 -3.2401 -0.5327 27 1 -0.3634 0.0038 1.0276 28 1 -0.3634 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5106 30 1 2.8937 -5.3238 0.9625 31 1 1.2854 -5.0026 0.2644 32 1 2.1362 -5.4325 -1.9999 33 1 2.5446 -6.8171 -0.9575 34 1 4.8153 -5.8630 -0.6014 35 1 6.4656 -6.3700 -5.8575 36 1 6.0631 -7.5901 -3.4792 37 1 6.3989 -7.0531 -1.8157 38 1 5.7820 -9.4219 -1.7830 39 1 4.4831 -8.4717 -1.0227 40 1 3.6306 -10.0159 -2.6336 41 1 3.8657 -3.7672 -2.6076 42 1 5.5331 -3.9391 -2.0081 43 1 4.2141 -2.1811 -0.7747 44 1 4.7987 -3.4860 0.2875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707280218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = 24.547910 kcal Electronic energy + Delta-G solvation = -28410.971701 eV Core-core repulsion = 24492.453352 eV Total energy + Delta-G solvation = -3918.518348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02989 -40.01824 -37.70349 -36.26817 -34.75726 -33.46758 -32.23138 -31.01894 -30.48572 -28.60237 -27.66853 -27.01540 -25.03514 -23.64248 -23.17080 -22.10598 -20.70817 -20.00480 -19.01837 -18.83171 -17.23077 -16.64932 -16.40626 -16.17609 -15.99580 -15.05649 -14.93963 -14.68324 -14.42147 -14.12509 -13.81520 -13.51639 -13.36499 -13.23264 -13.09788 -12.97015 -12.74204 -12.46136 -12.33036 -12.07440 -11.80115 -11.61725 -11.25288 -11.04451 -10.95034 -10.70314 -10.58007 -10.29989 -10.14775 -10.04894 -9.99980 -9.94189 -9.84563 -9.64738 -9.45061 -9.14646 -8.63694 -8.39249 -6.64920 -5.79150 -3.24180 -0.36324 0.69343 1.36870 1.85599 2.78308 2.91329 3.41366 3.49431 3.56750 3.78815 4.27226 4.47568 4.52420 4.80346 5.04570 5.16670 5.20099 5.26403 5.29728 5.42085 5.44346 5.48397 5.57371 5.64578 5.82428 5.85589 5.94393 5.99771 6.00650 6.12931 6.27471 6.30651 6.50456 6.56954 6.66624 6.72936 6.98210 7.02688 7.24058 7.57848 7.60675 7.85503 7.93595 8.39204 8.55910 9.18513 9.85229 10.36739 11.24565 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.003379 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.467312 B = 8284.600426 C = 8662.517583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.097 3.903 3 N -0.255 5.255 4 N -0.284 5.284 5 S 0.443 5.557 6 C -0.296 4.296 7 C 0.602 3.398 8 O -0.522 6.522 9 N -0.598 5.598 10 C 0.118 3.882 11 C -0.140 4.140 12 C 0.177 3.823 13 N -0.570 5.570 14 C -0.237 4.237 15 H 0.058 0.942 16 C 0.017 3.983 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.292 1.292 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.142 3.858 23 C 0.059 3.941 24 O -0.544 6.544 25 C -0.134 4.134 26 C 0.107 3.893 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.036 0.964 38 H 0.019 0.981 39 H 0.022 0.978 40 H 0.350 0.650 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 4.712 13.267 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 N -0.121 5.121 4 N -0.262 5.262 5 S 0.582 5.418 6 C -0.437 4.437 7 C 0.388 3.612 8 O -0.400 6.400 9 N -0.331 5.331 10 C -0.004 4.004 11 C -0.180 4.180 12 C 0.069 3.931 13 N -0.289 5.289 14 C -0.367 4.367 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.219 1.219 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.016 3.984 23 C -0.021 4.021 24 O -0.345 6.345 25 C -0.174 4.174 26 C -0.019 4.019 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.193 0.807 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.692 6.282 12.858 14.411 hybrid contribution -1.636 -1.335 -0.587 2.192 sum -3.328 4.947 12.272 13.644 Atomic orbital electron populations 1.20468 0.83943 1.04756 1.04154 1.22937 1.00148 0.85430 0.96460 1.70759 0.97202 1.28054 1.16054 1.78607 1.09359 1.19746 1.18538 1.83008 1.09599 0.98427 1.50814 1.27773 0.98154 1.00101 1.17656 1.16482 0.85511 0.81945 0.77301 1.90784 1.15861 1.82797 1.50510 1.47967 1.10861 1.07197 1.67053 1.21890 1.01712 0.78267 0.98562 1.22469 1.00064 0.99112 0.96373 1.20306 0.92574 0.89474 0.90762 1.43758 1.44063 1.35140 1.05921 1.18734 0.93035 1.42464 0.82443 0.92467 1.24856 0.95091 1.00784 0.97542 1.70030 1.06407 1.50380 1.26576 0.86479 0.79737 0.78118 0.83440 1.21908 1.21762 1.20383 1.21036 0.89702 0.84883 1.02789 1.23085 0.90535 0.97446 0.91060 1.86854 1.59325 1.43052 1.45287 1.22366 1.02873 0.96869 0.95271 1.22275 0.81846 0.98030 0.99734 0.89428 0.90004 0.88351 0.91428 0.89195 0.91019 0.91082 0.93206 0.93814 0.87738 0.94555 0.96247 0.95975 0.80732 0.90611 0.90189 0.92378 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 9.83 36.00 0.35 -0.43 16 2 C 0.10 1.27 7.00 -82.84 -0.58 0.70 16 3 N -0.25 -3.61 11.54 33.42 0.39 -3.22 16 4 N -0.28 -3.89 12.51 60.35 0.75 -3.13 16 5 S 0.44 5.04 19.38 -107.50 -2.08 2.96 16 6 C -0.30 -3.93 6.48 -35.95 -0.23 -4.16 16 7 C 0.60 8.75 7.64 -12.64 -0.10 8.65 16 8 O -0.52 -8.58 14.46 5.25 0.08 -8.50 16 9 N -0.60 -8.14 2.97 -173.86 -0.52 -8.65 16 10 C 0.12 1.56 6.47 -3.48 -0.02 1.54 16 11 C -0.14 -2.26 5.32 -26.38 -0.14 -2.40 16 12 C 0.18 3.09 2.59 -67.89 -0.18 2.91 16 13 N -0.57 -12.50 2.35 -165.61 -0.39 -12.89 16 14 C -0.24 -6.02 8.07 -15.06 -0.12 -6.14 16 15 H 0.06 1.50 6.89 -52.49 -0.36 1.14 16 16 C 0.02 0.44 4.82 -17.43 -0.08 0.36 16 17 N -0.89 -24.49 11.50 55.49 0.64 -23.85 16 18 Si 0.89 21.81 29.63 -169.99 -5.04 16.77 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.14 3.04 5.58 -4.04 -0.02 3.02 16 23 C 0.06 1.07 7.38 37.16 0.27 1.34 16 24 O -0.54 -10.76 13.42 -35.23 -0.47 -11.23 16 25 C -0.13 -2.19 5.31 -26.61 -0.14 -2.34 16 26 C 0.11 1.34 5.71 -3.71 -0.02 1.32 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.15 6.66 -51.93 -0.35 0.80 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 32 H 0.07 1.36 7.03 -51.93 -0.36 0.99 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16 35 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.11 2.65 5.40 -51.93 -0.28 2.37 16 37 H 0.04 0.71 8.05 -51.92 -0.42 0.29 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.35 4.98 9.12 45.56 0.42 5.40 16 41 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.06 0.69 3.18 -19.73 -0.06 0.63 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -31.25 363.64 -7.28 -38.53 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.11 Total: 3.37 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.01 Total: 4.37 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.87 Total: -51.74 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.40 Total: -19.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.04 Total: 16.77 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -2.08 Total: 2.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.25 -7.28 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707280218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.077 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds