Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31240 * 124.05750 * 2 1 4 4 N 1.27342 * 120.03896 * 180.34557 * 3 2 1 5 5 S 1.56636 * 109.73842 * 359.68917 * 4 3 2 6 6 C 1.38250 * 124.05670 * 179.79124 * 2 1 3 7 7 C 1.47171 * 128.47402 * 359.97438 * 6 2 1 8 8 O 1.21626 * 120.00105 * 352.18431 * 7 6 2 9 9 N 1.34771 * 120.00231 * 172.46189 * 7 6 2 10 10 C 1.46922 * 120.63082 * 169.38397 * 9 7 6 11 11 C 1.53632 * 108.53919 * 126.37438 * 10 9 7 12 12 C 1.53042 * 109.24363 * 54.85698 * 11 10 9 13 13 N 1.46497 * 109.45805 * 178.49406 * 12 11 10 14 14 C 1.36933 * 120.00341 * 60.06441 * 13 12 11 15 15 H 1.08001 * 120.00232 * 327.48735 * 14 13 12 16 16 C 1.38813 * 119.99762 * 147.47982 * 14 13 12 17 17 N 1.31615 * 120.00424 * 334.00872 * 16 14 13 18 18 Si 1.86808 * 119.99839 * 154.01170 * 16 14 13 19 19 H 1.48501 * 109.47047 * 89.99713 * 18 16 14 20 20 H 1.48501 * 109.46925 * 210.00024 * 18 16 14 21 21 H 1.48506 * 109.46783 * 330.00010 * 18 16 14 22 22 C 1.46502 * 119.99758 * 240.06724 * 13 12 11 23 23 C 1.52998 * 109.47085 * 83.93886 * 22 13 12 24 24 O 1.42899 * 109.46975 * 65.00610 * 23 22 13 25 25 C 1.53046 * 109.53439 * 298.51085 * 12 11 10 26 26 C 1.46929 * 120.62821 * 349.67491 * 9 7 6 27 27 H 1.08995 * 109.47335 * 270.21025 * 1 2 3 28 28 H 1.09004 * 109.47299 * 30.21196 * 1 2 3 29 29 H 1.09000 * 109.47152 * 150.20747 * 1 2 3 30 30 H 1.09005 * 109.58860 * 246.20059 * 10 9 7 31 31 H 1.08992 * 109.59075 * 6.63180 * 10 9 7 32 32 H 1.09000 * 109.63353 * 294.86496 * 11 10 9 33 33 H 1.08999 * 109.43079 * 174.72405 * 11 10 9 34 34 H 1.08993 * 109.45943 * 58.53207 * 12 11 10 35 35 H 0.97003 * 120.00240 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47376 * 203.94259 * 22 13 12 37 37 H 1.09007 * 109.47077 * 323.94457 * 22 13 12 38 38 H 1.09005 * 109.46899 * 184.99821 * 23 22 13 39 39 H 1.08992 * 109.47540 * 305.00215 * 23 22 13 40 40 H 0.96700 * 113.99980 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.49975 * 301.41229 * 25 12 11 42 42 H 1.08999 * 109.51861 * 181.33598 * 25 12 11 43 43 H 1.09001 * 109.58439 * 353.36448 * 26 9 7 44 44 H 1.08998 * 109.59200 * 113.65525 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5122 0.9981 -0.0066 5 16 3.9366 -0.5097 -0.0059 6 6 2.2812 -1.1454 0.0042 7 6 1.8394 -2.5492 0.0098 8 8 0.6615 -2.8155 0.1545 9 7 2.7407 -3.5399 -0.1398 10 6 2.3600 -4.9397 0.0932 11 6 2.7344 -5.7611 -1.1500 12 6 4.2189 -5.5573 -1.4610 13 7 4.5894 -6.3668 -2.6244 14 6 3.9690 -6.1606 -3.8276 15 1 2.9364 -5.8453 -3.8558 16 6 4.6674 -6.3566 -5.0112 17 7 5.9777 -6.2334 -5.0303 18 14 3.7475 -6.7951 -6.5768 19 1 3.3715 -5.5509 -7.2949 20 1 4.6190 -7.6249 -7.4470 21 1 2.5208 -7.5582 -6.2328 22 6 5.6237 -7.3969 -2.5006 23 6 4.9991 -8.6842 -1.9589 24 8 4.0658 -9.1982 -2.9112 25 6 4.4803 -4.0800 -1.7635 26 6 4.1243 -3.2401 -0.5327 27 1 -0.3634 0.0038 1.0276 28 1 -0.3634 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5106 30 1 2.8937 -5.3238 0.9625 31 1 1.2854 -5.0026 0.2644 32 1 2.1362 -5.4325 -1.9999 33 1 2.5446 -6.8171 -0.9575 34 1 4.8153 -5.8630 -0.6014 35 1 6.4656 -6.3700 -5.8575 36 1 6.0631 -7.5901 -3.4792 37 1 6.3989 -7.0531 -1.8157 38 1 5.7820 -9.4219 -1.7830 39 1 4.4831 -8.4717 -1.0227 40 1 3.6306 -10.0159 -2.6336 41 1 3.8657 -3.7672 -2.6076 42 1 5.5331 -3.9391 -2.0081 43 1 4.2141 -2.1811 -0.7747 44 1 4.7987 -3.4860 0.2875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707280218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = 1.785264 kcal Electronic energy + Delta-G solvation = -28411.958763 eV Core-core repulsion = 24492.453352 eV Total energy + Delta-G solvation = -3919.505411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04708 -41.15633 -39.08407 -37.67614 -36.27271 -34.47544 -33.83929 -32.29473 -32.00589 -29.77737 -29.12082 -28.01416 -26.56579 -25.02964 -24.45286 -23.27355 -22.13502 -21.44391 -20.21985 -19.82501 -18.44809 -18.15727 -17.88216 -17.26858 -17.16490 -16.75592 -16.14432 -16.05697 -15.71033 -15.55247 -15.26900 -14.78602 -14.62156 -14.47757 -14.17325 -14.02877 -13.96170 -13.73438 -13.50751 -13.38800 -13.17083 -13.02289 -12.75281 -12.60599 -12.51304 -12.39554 -12.21727 -11.81945 -11.65741 -11.57715 -11.27903 -11.13075 -11.05646 -10.85195 -10.61275 -10.55606 -10.30851 -9.75882 -8.49272 -7.75932 -5.21021 -1.37319 -0.27359 0.38633 0.83662 1.42533 1.47961 1.56829 1.68657 1.84528 2.58023 2.81357 3.23006 3.35230 3.51110 3.56791 3.73697 3.87672 4.11494 4.15731 4.23720 4.34815 4.41754 4.52605 4.63245 4.65836 4.67209 4.72513 4.75347 4.83325 4.89553 4.96914 5.06640 5.14993 5.18070 5.19932 5.40032 5.60637 5.63770 5.79224 5.87938 6.13354 6.54203 6.58493 6.83247 7.23927 7.30996 8.02564 8.46865 9.22493 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015030 B = 0.003379 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.467312 B = 8284.600426 C = 8662.517583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.094 3.906 3 N -0.275 5.275 4 N -0.308 5.308 5 S 0.511 5.489 6 C -0.320 4.320 7 C 0.602 3.398 8 O -0.546 6.546 9 N -0.599 5.599 10 C 0.126 3.874 11 C -0.128 4.128 12 C 0.171 3.829 13 N -0.583 5.583 14 C -0.219 4.219 15 H 0.041 0.959 16 C -0.029 4.029 17 N -0.913 5.913 18 Si 0.930 3.070 19 H -0.293 1.293 20 H -0.296 1.296 21 H -0.284 1.284 22 C 0.136 3.864 23 C 0.066 3.934 24 O -0.578 6.578 25 C -0.126 4.126 26 C 0.117 3.883 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.245 0.755 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.374 0.626 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 4.604 15.830 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.140 5.140 4 N -0.287 5.287 5 S 0.650 5.350 6 C -0.460 4.460 7 C 0.388 3.612 8 O -0.425 6.425 9 N -0.332 5.332 10 C 0.004 3.996 11 C -0.168 4.168 12 C 0.065 3.935 13 N -0.302 5.302 14 C -0.350 4.350 15 H 0.058 0.942 16 C -0.225 4.225 17 N -0.559 5.559 18 Si 0.761 3.239 19 H -0.221 1.221 20 H -0.223 1.223 21 H -0.209 1.209 22 C 0.010 3.990 23 C -0.013 4.013 24 O -0.383 6.383 25 C -0.166 4.166 26 C -0.009 4.009 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.220 0.780 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.379 6.168 15.445 16.689 hybrid contribution -1.732 -1.342 -1.344 2.570 sum -3.110 4.826 14.101 15.225 Atomic orbital electron populations 1.20526 0.82730 1.04819 1.05086 1.23274 1.01104 0.85231 0.95700 1.70802 0.97370 1.28639 1.17187 1.78423 1.09533 1.21518 1.19247 1.82629 1.07464 0.96499 1.48435 1.27758 0.99742 0.99608 1.18913 1.16603 0.85234 0.82456 0.76859 1.90770 1.16824 1.83268 1.51649 1.48033 1.11115 1.07269 1.66745 1.21869 1.02095 0.77622 0.98028 1.22281 0.98379 0.99680 0.96470 1.20551 0.93641 0.89365 0.89969 1.43913 1.43901 1.36424 1.05976 1.18703 0.92289 1.39965 0.83993 0.94172 1.25232 0.95573 1.02549 0.99148 1.70109 1.06957 1.52546 1.26314 0.85873 0.78598 0.77535 0.81899 1.22107 1.22305 1.20940 1.21018 0.90190 0.86551 1.01254 1.22925 0.91076 0.96323 0.91010 1.86775 1.60040 1.44821 1.46712 1.22178 1.01529 0.97008 0.95887 1.22259 0.81977 0.97547 0.99128 0.88011 0.88594 0.89503 0.87755 0.89614 0.94827 0.90958 0.90160 0.94583 0.91871 0.92842 0.93821 0.93755 0.77994 0.94453 0.91046 0.91828 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.83 71.23 0.70 -0.76 16 2 C 0.09 2.37 7.00 42.65 0.30 2.67 16 3 N -0.27 -7.46 11.54 -48.18 -0.56 -8.01 16 4 N -0.31 -7.96 12.51 37.02 0.46 -7.50 16 5 S 0.51 10.42 19.38 -56.49 -1.09 9.32 16 6 C -0.32 -7.94 6.48 24.62 0.16 -7.78 16 7 C 0.60 16.52 7.64 86.59 0.66 17.18 16 8 O -0.55 -17.42 14.46 -4.11 -0.06 -17.47 16 9 N -0.60 -14.83 2.97 -822.23 -2.44 -17.27 16 10 C 0.13 2.97 6.47 86.51 0.56 3.53 16 11 C -0.13 -3.94 5.32 30.82 0.16 -3.77 16 12 C 0.17 5.64 2.59 45.02 0.12 5.76 16 13 N -0.58 -25.16 2.35 -677.88 -1.59 -26.75 16 14 C -0.22 -11.26 8.07 84.03 0.68 -10.59 16 15 H 0.04 2.19 6.89 -2.91 -0.02 2.17 16 16 C -0.03 -1.56 4.82 84.86 0.41 -1.15 16 17 N -0.91 -51.40 11.50 21.65 0.25 -51.15 16 18 Si 0.93 45.86 29.63 68.60 2.03 47.90 16 19 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 20 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 21 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 22 C 0.14 5.65 5.58 86.38 0.48 6.13 16 23 C 0.07 2.23 7.38 71.98 0.53 2.76 16 24 O -0.58 -22.07 13.42 -148.98 -2.00 -24.07 16 25 C -0.13 -3.97 5.31 30.67 0.16 -3.81 16 26 C 0.12 2.56 5.71 86.36 0.49 3.05 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.09 1.99 6.66 -2.39 -0.02 1.98 16 30 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.09 2.17 7.01 -2.39 -0.02 2.15 16 32 H 0.03 1.28 7.03 -2.39 -0.02 1.26 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.20 7.87 -2.39 -0.02 2.18 16 35 H 0.24 13.65 8.31 -92.71 -0.77 12.88 16 36 H 0.06 3.23 5.40 -2.39 -0.01 3.22 16 37 H 0.05 1.98 8.05 -2.38 -0.02 1.96 16 38 H 0.04 1.26 8.14 -2.38 -0.02 1.25 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.37 9.92 9.12 -74.06 -0.68 9.25 16 41 H 0.04 1.45 7.71 -2.39 -0.02 1.43 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 1.34 3.18 -22.86 -0.07 1.26 16 44 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.79 363.64 0.73 -69.06 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.31 Total: 12.71 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.42 Total: 13.23 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.88 Total: -110.69 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -2.06 Total: -41.54 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 10.42 SS G_CDS: -1.09 Total: 9.32 kcal Total: -69.79 0.73 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707280218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.846 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds