Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35000 * 127.27389 * 2 1 4 4 C 1.39489 * 111.68317 * 180.02562 * 3 2 1 5 5 C 1.47696 * 122.09943 * 180.26716 * 4 3 2 6 6 O 1.21574 * 120.00431 * 359.73784 * 5 4 3 7 7 N 1.34779 * 119.99846 * 179.73550 * 5 4 3 8 8 C 1.46497 * 120.00152 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47088 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47210 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47263 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00135 * 66.04627 * 11 10 9 13 13 C 1.46900 * 110.99982 * 190.00087 * 11 10 9 14 14 C 1.50700 * 109.47404 * 169.99813 * 13 11 10 15 15 O 1.21292 * 119.99423 * 359.97438 * 14 13 11 16 16 N 1.34769 * 120.00090 * 179.97438 * 14 13 11 17 17 C 1.37099 * 120.00026 * 180.02562 * 16 14 13 18 18 H 1.07995 * 119.99809 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00210 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99608 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46849 * 60.00629 * 21 19 17 23 23 H 1.48495 * 109.46971 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47281 * 300.00284 * 21 19 17 25 25 N 1.30604 * 115.79459 * 359.97438 * 4 3 2 26 26 S 1.56142 * 109.79730 * 0.02562 * 25 4 3 27 27 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47087 * 299.96937 * 1 2 3 29 29 H 1.08998 * 109.47611 * 59.96970 * 1 2 3 30 30 H 1.07997 * 124.15776 * 0.04347 * 3 2 1 31 31 H 0.97007 * 119.99593 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47118 * 300.00250 * 8 7 5 33 33 H 1.09002 * 109.46843 * 60.00206 * 8 7 5 34 34 H 1.09003 * 109.47156 * 299.99813 * 9 8 7 35 35 H 1.08994 * 109.47298 * 60.00065 * 9 8 7 36 36 H 1.09003 * 109.46737 * 299.99859 * 10 9 8 37 37 H 1.09008 * 109.47136 * 59.99607 * 10 9 8 38 38 H 1.08996 * 109.47522 * 59.99949 * 12 11 10 39 39 H 1.09001 * 109.46817 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.46627 * 299.99615 * 12 11 10 41 41 H 1.09004 * 109.46489 * 289.99672 * 13 11 10 42 42 H 1.08997 * 109.47141 * 49.99474 * 13 11 10 43 43 H 0.97006 * 120.00086 * 359.97438 * 16 14 13 44 44 H 0.97005 * 119.99568 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3245 1.0743 0.0000 4 6 3.6681 0.6994 -0.0006 5 6 4.7603 1.6936 0.0051 6 8 4.5012 2.8814 0.0057 7 7 6.0444 1.2840 0.0097 8 6 7.1278 2.2700 0.0160 9 6 8.4759 1.5465 0.0196 10 6 9.6075 2.5763 0.0268 11 7 10.9018 1.8816 0.0297 12 6 11.1071 1.1456 -1.2249 13 6 12.0034 2.8220 0.2746 14 6 13.2768 2.0526 0.5146 15 8 13.2673 0.8401 0.4850 16 7 14.4259 2.7118 0.7621 17 6 15.5845 2.0118 0.9799 18 1 15.5761 0.9322 0.9536 19 6 16.7694 2.6914 1.2346 20 7 16.7794 4.0051 1.2672 21 14 18.3478 1.7376 1.5321 22 1 18.6583 0.9100 0.3388 23 1 19.4615 2.6883 1.7791 24 1 18.1782 0.8565 2.7152 25 7 3.8995 -0.5860 -0.0005 26 16 2.5473 -1.3668 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 1.9806 2.0980 0.0007 31 1 6.2511 0.3362 0.0089 32 1 7.0543 2.8961 -0.8732 33 1 7.0469 2.8930 0.9068 34 1 8.5496 0.9200 0.9086 35 1 8.5565 0.9238 -0.8713 36 1 9.5339 3.2030 -0.8620 37 1 9.5267 3.1987 0.9180 38 1 11.0864 1.8426 -2.0627 39 1 12.0724 0.6403 -1.1959 40 1 10.3145 0.4073 -1.3468 41 1 12.1282 3.4694 -0.5934 42 1 11.7750 3.4289 1.1507 43 1 14.4335 3.6815 0.7854 44 1 17.6065 4.4795 1.4453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707374593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = -29.040121 kcal Electronic energy + Delta-G solvation = -25388.147609 eV Core-core repulsion = 21467.305509 eV Total energy + Delta-G solvation = -3920.842100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79422 -38.86600 -38.56159 -36.90721 -35.29786 -33.89930 -33.74513 -31.61225 -31.19144 -28.74216 -27.92162 -27.08966 -25.53651 -24.50679 -22.67844 -21.40458 -20.93947 -20.24818 -19.12800 -18.68436 -17.84370 -17.65318 -16.37768 -16.24982 -15.81168 -15.61902 -15.21109 -14.88320 -14.68049 -14.58879 -14.21261 -14.05381 -13.67796 -13.54531 -13.52030 -13.35286 -13.25683 -13.15005 -12.31375 -12.11390 -11.87612 -11.74489 -11.62914 -11.46753 -11.41178 -11.22882 -11.21822 -10.88757 -10.70766 -10.42621 -10.31904 -10.19324 -9.97919 -9.45485 -9.44597 -9.18493 -8.43065 -7.95708 -7.83018 -6.39676 -3.80453 0.10333 0.91774 1.32335 1.33856 2.79490 2.90095 3.21451 3.27027 3.31382 3.92864 3.99118 4.10120 4.26127 4.43001 4.67592 4.68924 4.83506 4.93117 4.95116 5.07029 5.11416 5.15351 5.27284 5.31700 5.40565 5.41712 5.51052 5.60376 5.71944 5.76012 5.84998 5.94506 5.99452 6.01921 6.09234 6.18725 6.31078 6.58063 7.17602 7.29144 7.41478 7.56918 7.82299 8.08440 8.64270 9.20178 9.56833 10.08941 10.78035 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036150 B = 0.001427 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.367149 B =19610.912242 C =20117.953526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.248 4.248 3 C -0.143 4.143 4 C 0.055 3.945 5 C 0.590 3.410 6 O -0.530 6.530 7 N -0.709 5.709 8 C 0.119 3.881 9 C -0.128 4.128 10 C 0.059 3.941 11 N -0.519 5.519 12 C 0.020 3.980 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.578 6.578 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 N -0.523 5.523 26 S 0.471 5.529 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.613 -5.861 -3.936 33.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.379 4.379 3 C -0.175 4.175 4 C -0.119 4.119 5 C 0.371 3.629 6 O -0.405 6.405 7 N -0.360 5.360 8 C -0.004 4.004 9 C -0.166 4.166 10 C -0.070 4.070 11 N -0.243 5.243 12 C -0.128 4.128 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.462 6.462 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.358 5.358 26 S 0.626 5.374 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.189 0.811 31 H 0.246 0.754 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.032 0.968 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -31.832 -8.013 -3.533 33.014 hybrid contribution 0.630 2.335 -0.473 2.464 sum -31.202 -5.678 -4.006 31.966 Atomic orbital electron populations 1.20223 0.85941 1.03455 1.03707 1.26146 1.03481 1.00134 1.08135 1.21246 0.90295 1.02075 1.03865 1.21060 0.94939 0.89220 1.06720 1.17234 0.81928 0.86789 0.76965 1.90818 1.83543 1.16049 1.50124 1.45849 1.05041 1.11464 1.73677 1.21430 0.85085 0.91124 1.02789 1.21782 0.91870 0.99053 1.03916 1.21999 0.89002 0.95012 1.01027 1.61534 1.00222 1.26754 1.35778 1.22578 1.04526 0.97621 0.88050 1.21863 0.91536 0.93977 1.01167 1.19743 0.84418 0.88478 0.84425 1.90479 1.85642 1.13780 1.56327 1.41860 1.06872 1.09251 1.62121 1.19651 0.84846 0.93250 1.45168 0.87981 1.25252 0.99562 0.95678 0.97406 1.69608 1.28856 1.06355 1.49541 0.85920 0.80403 0.78819 0.79085 1.19946 1.20997 1.19907 1.72236 1.29346 1.10648 1.23581 1.80551 0.87411 1.12171 1.57254 0.90745 0.89987 0.90001 0.81123 0.75405 0.91135 0.90859 0.90056 0.91004 0.94840 0.90525 0.96791 0.88625 0.92105 0.93455 0.89365 0.77488 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.21 10.46 36.00 0.38 0.17 16 2 C -0.25 -1.47 6.58 -35.46 -0.23 -1.70 16 3 C -0.14 -1.18 9.93 -40.27 -0.40 -1.58 16 4 C 0.06 0.56 6.66 -84.06 -0.56 0.00 16 5 C 0.59 6.99 7.81 -12.40 -0.10 6.89 16 6 O -0.53 -7.66 16.66 5.30 0.09 -7.57 16 7 N -0.71 -7.34 5.55 -61.30 -0.34 -7.68 16 8 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 9 C -0.13 -1.36 5.25 -26.73 -0.14 -1.50 16 10 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 11 N -0.52 -8.65 4.50 -244.37 -1.10 -9.75 16 12 C 0.02 0.33 8.96 60.06 0.54 0.86 16 13 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 14 C 0.44 10.56 7.47 -10.99 -0.08 10.47 16 15 O -0.58 -15.62 13.91 5.55 0.08 -15.54 16 16 N -0.56 -14.40 5.29 -10.97 -0.06 -14.46 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 21 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 N -0.52 -4.83 10.71 24.84 0.27 -4.57 16 26 S 0.47 2.82 23.20 -107.50 -2.49 0.33 16 27 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.08 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.17 1.32 7.99 -52.49 -0.42 0.90 16 31 H 0.41 3.82 7.94 -40.82 -0.32 3.49 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 36 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.08 0.90 7.93 -51.92 -0.41 0.49 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 1.90 5.83 -51.93 -0.30 1.60 16 40 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 41 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 43 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -33.80 385.37 -9.14 -42.94 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.18 Total: 10.00 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.91 Total: 8.29 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.51 Total: -60.39 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.17 Total: -23.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.49 Total: 0.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.80 -9.14 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707374593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.903 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds