Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35000 * 127.27389 * 2 1 4 4 C 1.39489 * 111.68317 * 180.02562 * 3 2 1 5 5 C 1.47696 * 122.09943 * 180.26716 * 4 3 2 6 6 O 1.21574 * 120.00431 * 359.73784 * 5 4 3 7 7 N 1.34779 * 119.99846 * 179.73550 * 5 4 3 8 8 C 1.46497 * 120.00152 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47088 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.47210 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47263 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00135 * 66.04627 * 11 10 9 13 13 C 1.46900 * 110.99982 * 190.00087 * 11 10 9 14 14 C 1.50700 * 109.47404 * 169.99813 * 13 11 10 15 15 O 1.21292 * 119.99423 * 359.97438 * 14 13 11 16 16 N 1.34769 * 120.00090 * 179.97438 * 14 13 11 17 17 C 1.37099 * 120.00026 * 180.02562 * 16 14 13 18 18 H 1.07995 * 119.99809 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00210 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99608 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46849 * 60.00629 * 21 19 17 23 23 H 1.48495 * 109.46971 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47281 * 300.00284 * 21 19 17 25 25 N 1.30604 * 115.79459 * 359.97438 * 4 3 2 26 26 S 1.56142 * 109.79730 * 0.02562 * 25 4 3 27 27 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.47087 * 299.96937 * 1 2 3 29 29 H 1.08998 * 109.47611 * 59.96970 * 1 2 3 30 30 H 1.07997 * 124.15776 * 0.04347 * 3 2 1 31 31 H 0.97007 * 119.99593 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47118 * 300.00250 * 8 7 5 33 33 H 1.09002 * 109.46843 * 60.00206 * 8 7 5 34 34 H 1.09003 * 109.47156 * 299.99813 * 9 8 7 35 35 H 1.08994 * 109.47298 * 60.00065 * 9 8 7 36 36 H 1.09003 * 109.46737 * 299.99859 * 10 9 8 37 37 H 1.09008 * 109.47136 * 59.99607 * 10 9 8 38 38 H 1.08996 * 109.47522 * 59.99949 * 12 11 10 39 39 H 1.09001 * 109.46817 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.46627 * 299.99615 * 12 11 10 41 41 H 1.09004 * 109.46489 * 289.99672 * 13 11 10 42 42 H 1.08997 * 109.47141 * 49.99474 * 13 11 10 43 43 H 0.97006 * 120.00086 * 359.97438 * 16 14 13 44 44 H 0.97005 * 119.99568 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3245 1.0743 0.0000 4 6 3.6681 0.6994 -0.0006 5 6 4.7603 1.6936 0.0051 6 8 4.5012 2.8814 0.0057 7 7 6.0444 1.2840 0.0097 8 6 7.1278 2.2700 0.0160 9 6 8.4759 1.5465 0.0196 10 6 9.6075 2.5763 0.0268 11 7 10.9018 1.8816 0.0297 12 6 11.1071 1.1456 -1.2249 13 6 12.0034 2.8220 0.2746 14 6 13.2768 2.0526 0.5146 15 8 13.2673 0.8401 0.4850 16 7 14.4259 2.7118 0.7621 17 6 15.5845 2.0118 0.9799 18 1 15.5761 0.9322 0.9536 19 6 16.7694 2.6914 1.2346 20 7 16.7794 4.0051 1.2672 21 14 18.3478 1.7376 1.5321 22 1 18.6583 0.9100 0.3388 23 1 19.4615 2.6883 1.7791 24 1 18.1782 0.8565 2.7152 25 7 3.8995 -0.5860 -0.0005 26 16 2.5473 -1.3668 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5134 0.8903 29 1 -0.3634 0.5143 -0.8897 30 1 1.9806 2.0980 0.0007 31 1 6.2511 0.3362 0.0089 32 1 7.0543 2.8961 -0.8732 33 1 7.0469 2.8930 0.9068 34 1 8.5496 0.9200 0.9086 35 1 8.5565 0.9238 -0.8713 36 1 9.5339 3.2030 -0.8620 37 1 9.5267 3.1987 0.9180 38 1 11.0864 1.8426 -2.0627 39 1 12.0724 0.6403 -1.1959 40 1 10.3145 0.4073 -1.3468 41 1 12.1282 3.4694 -0.5934 42 1 11.7750 3.4289 1.1507 43 1 14.4335 3.6815 0.7854 44 1 17.6065 4.4795 1.4453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707374593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = -55.068743 kcal Electronic energy + Delta-G solvation = -25389.276294 eV Core-core repulsion = 21467.305509 eV Total energy + Delta-G solvation = -3921.970785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53178 -40.38736 -39.51973 -38.26079 -36.36685 -35.80269 -34.29014 -33.28035 -32.57104 -29.44091 -29.19754 -28.03199 -26.89739 -25.89035 -23.79701 -22.22126 -21.78233 -21.02540 -20.96272 -19.84352 -19.29200 -18.38879 -17.83938 -17.12337 -16.98999 -16.59786 -16.54642 -16.39081 -15.97123 -15.66645 -15.40679 -15.14327 -15.00445 -14.71380 -14.60155 -13.99339 -13.82389 -13.74586 -13.49547 -13.46961 -13.36072 -13.02510 -12.86266 -12.73387 -12.52997 -12.41321 -12.37007 -12.29694 -12.11853 -11.87822 -11.67816 -11.44349 -11.16524 -10.48389 -10.29564 -10.26372 -9.98974 -9.76403 -9.19682 -8.45298 -5.93984 -0.49331 0.42842 0.65971 0.76302 1.40296 1.41939 1.52882 1.99651 2.07051 2.08976 2.29744 2.80209 3.21594 3.43361 3.55461 3.79553 3.93527 4.01348 4.11675 4.18460 4.28730 4.32061 4.39774 4.48221 4.54919 4.59891 4.60563 4.69696 4.73265 4.76998 4.77979 4.89488 5.05938 5.15744 5.16347 5.22959 5.26936 5.37169 5.41942 5.89146 6.07893 6.22620 6.36043 6.62289 6.98103 7.14277 7.58061 8.14135 8.71888 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.036150 B = 0.001427 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.367149 B =19610.912242 C =20117.953526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.236 4.236 3 C -0.165 4.165 4 C 0.033 3.967 5 C 0.585 3.415 6 O -0.565 6.565 7 N -0.703 5.703 8 C 0.126 3.874 9 C -0.115 4.115 10 C 0.059 3.941 11 N -0.539 5.539 12 C 0.025 3.975 13 C 0.057 3.943 14 C 0.440 3.560 15 O -0.615 6.615 16 N -0.575 5.575 17 C -0.334 4.334 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.272 1.272 25 N -0.553 5.553 26 S 0.528 5.472 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.415 0.585 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.322 -6.307 -4.082 35.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.367 4.367 3 C -0.196 4.196 4 C -0.139 4.139 5 C 0.368 3.632 6 O -0.444 6.444 7 N -0.355 5.355 8 C 0.002 3.998 9 C -0.153 4.153 10 C -0.069 4.069 11 N -0.263 5.263 12 C -0.123 4.123 13 C -0.074 4.074 14 C 0.228 3.772 15 O -0.501 6.501 16 N -0.212 5.212 17 C -0.464 4.464 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.198 1.198 25 N -0.390 5.390 26 S 0.683 5.317 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.252 0.748 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.229 0.771 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -33.554 -8.448 -3.684 34.796 hybrid contribution 1.025 2.364 -0.440 2.614 sum -32.529 -6.084 -4.124 33.349 Atomic orbital electron populations 1.20421 0.83547 1.05116 1.04547 1.26548 1.04974 0.99348 1.05827 1.21296 0.90099 1.02769 1.05450 1.20912 0.94969 0.89233 1.08834 1.17565 0.82602 0.86795 0.76256 1.90782 1.84134 1.17489 1.51957 1.45827 1.04826 1.11776 1.73022 1.21333 0.84745 0.90976 1.02721 1.21628 0.91392 0.98497 1.03776 1.22074 0.87125 0.95427 1.02232 1.61487 1.01305 1.27323 1.36186 1.22456 1.02979 0.98235 0.88617 1.21742 0.89108 0.93606 1.02937 1.20794 0.85652 0.88440 0.82325 1.90457 1.86507 1.15771 1.57337 1.41932 1.07035 1.09338 1.62905 1.19631 0.86658 0.92631 1.47441 0.90313 1.26024 1.02056 0.96639 0.96485 1.69671 1.29877 1.07271 1.49363 0.84996 0.76789 0.77755 0.78835 1.19704 1.19501 1.19773 1.71998 1.32052 1.10537 1.24409 1.80290 0.85691 1.10713 1.54958 0.88695 0.89094 0.89056 0.81387 0.74788 0.91061 0.91102 0.90716 0.90618 0.93364 0.89529 0.95293 0.92754 0.90065 0.91494 0.87208 0.77051 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.46 71.23 0.75 0.52 16 2 C -0.24 -2.37 6.58 24.94 0.16 -2.20 16 3 C -0.16 -2.65 9.93 21.83 0.22 -2.44 16 4 C 0.03 0.67 6.66 42.13 0.28 0.95 16 5 C 0.59 14.06 7.81 86.74 0.68 14.73 16 6 O -0.56 -16.75 16.66 -3.95 -0.07 -16.81 16 7 N -0.70 -14.37 5.55 -466.12 -2.59 -16.95 16 8 C 0.13 2.45 5.67 86.38 0.49 2.94 16 9 C -0.11 -2.27 5.25 30.60 0.16 -2.11 16 10 C 0.06 1.36 4.96 86.31 0.43 1.79 16 11 N -0.54 -17.28 4.50 -927.04 -4.17 -21.45 16 12 C 0.03 0.80 8.96 127.69 1.14 1.94 16 13 C 0.06 2.00 5.45 85.56 0.47 2.47 16 14 C 0.44 21.23 7.47 87.66 0.66 21.88 16 15 O -0.61 -34.18 13.91 -3.07 -0.04 -34.22 16 16 N -0.57 -29.85 5.29 -306.99 -1.62 -31.47 16 17 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 21 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 N -0.55 -9.80 10.71 -75.32 -0.81 -10.60 16 26 S 0.53 5.33 23.20 -56.49 -1.31 4.02 16 27 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 30 H 0.17 2.67 7.99 -2.91 -0.02 2.65 16 31 H 0.42 7.55 7.94 -92.70 -0.74 6.82 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.45 6.55 -2.39 -0.02 1.44 16 36 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 37 H 0.09 1.83 7.93 -2.38 -0.02 1.81 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 2.20 5.83 -2.39 -0.01 2.19 16 40 H 0.08 2.19 6.47 -2.39 -0.02 2.18 16 41 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 42 H 0.11 3.38 7.93 -2.39 -0.02 3.36 16 43 H 0.40 19.53 7.90 -92.70 -0.73 18.80 16 44 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -74.68 385.37 -2.01 -76.68 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.42 Total: 33.40 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.71 Total: 21.92 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -8.91 Total: -130.30 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -0.11 Total: -51.04 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.31 Total: 4.02 kcal Total: -74.68 -2.01 -76.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707374593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.616 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds