Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29953 * 125.30276 * 2 1 4 4 O 1.41875 * 107.41272 * 180.02562 * 3 2 1 5 5 N 1.41876 * 106.38870 * 359.78492 * 4 3 2 6 6 C 1.29957 * 107.41425 * 0.36754 * 5 4 3 7 7 C 1.50691 * 125.30365 * 179.89369 * 6 5 4 8 8 N 1.46899 * 109.47415 * 269.69131 * 7 6 5 9 9 C 1.47441 * 110.99730 * 53.44526 * 8 7 6 10 10 C 1.54315 * 107.23504 * 123.26112 * 9 8 7 11 11 C 1.55138 * 103.01832 * 22.28207 * 10 9 8 12 12 C 1.47847 * 111.00213 * 174.28958 * 8 7 6 13 13 H 1.08999 * 110.37325 * 332.57492 * 12 8 7 14 14 C 1.52992 * 110.37294 * 94.80768 * 12 8 7 15 15 N 1.46502 * 109.47259 * 298.73183 * 14 12 8 16 16 C 1.34780 * 120.00093 * 173.60827 * 15 14 12 17 17 O 1.21279 * 119.99785 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99955 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47059 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99929 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99505 * 0.02562 * 20 19 18 22 22 C 1.38791 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00292 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47356 * 90.00014 * 24 22 20 26 26 H 1.48498 * 109.47484 * 210.00368 * 24 22 20 27 27 H 1.48507 * 109.46870 * 330.00201 * 24 22 20 28 28 H 1.08997 * 109.46794 * 269.99484 * 1 2 3 29 29 H 1.08999 * 109.46876 * 29.99917 * 1 2 3 30 30 H 1.09001 * 109.47090 * 149.99459 * 1 2 3 31 31 H 1.08999 * 109.47076 * 149.69333 * 7 6 5 32 32 H 1.09006 * 109.47591 * 29.69528 * 7 6 5 33 33 H 1.09010 * 109.89064 * 242.66525 * 9 8 7 34 34 H 1.08995 * 109.89095 * 3.68938 * 9 8 7 35 35 H 1.09001 * 110.71099 * 140.66302 * 10 9 8 36 36 H 1.08996 * 110.70488 * 263.90209 * 10 9 8 37 37 H 1.09001 * 110.99566 * 206.25710 * 11 10 9 38 38 H 1.09004 * 110.99403 * 82.43771 * 11 10 9 39 39 H 1.09000 * 109.47426 * 178.73384 * 14 12 8 40 40 H 1.09005 * 109.47659 * 58.73758 * 14 12 8 41 41 H 0.97000 * 119.99690 * 353.60659 * 15 14 12 42 42 H 1.09003 * 109.47164 * 59.99874 * 18 16 15 43 43 H 1.08995 * 109.46963 * 299.99520 * 18 16 15 44 44 H 0.96999 * 120.00248 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7935 0.0042 6 6 2.3213 -1.1499 -0.0007 7 6 1.8210 -2.5713 -0.0005 8 7 1.6574 -3.0331 -1.3854 9 6 2.8980 -2.8372 -2.1576 10 6 3.3081 -4.2140 -2.7212 11 6 1.9745 -5.0066 -2.7120 12 6 1.2984 -4.4668 -1.4270 13 1 1.6863 -4.9807 -0.5475 14 6 -0.2199 -4.6333 -1.5136 15 7 -0.8444 -4.0448 -0.3262 16 6 -2.1868 -3.9586 -0.2434 17 8 -2.8779 -4.3677 -1.1522 18 6 -2.8291 -3.3527 0.9778 19 16 -4.6290 -3.3795 0.7890 20 6 -5.1076 -2.6356 2.3130 21 1 -4.3546 -2.3237 3.0215 22 6 -6.4523 -2.4497 2.6023 23 7 -7.3700 -2.8295 1.7385 24 14 -6.9597 -1.6605 4.2175 25 1 -7.0493 -0.1886 4.0427 26 1 -8.2828 -2.1911 4.6337 27 1 -5.9502 -1.9746 5.2605 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 0.8612 -2.6186 0.5140 32 1 2.5402 -3.2096 0.5128 33 1 2.7192 -2.1398 -2.9762 34 1 3.6828 -2.4515 -1.5070 35 1 3.6911 -4.1162 -3.7370 36 1 4.0445 -4.6913 -2.0747 37 1 2.1577 -6.0784 -2.6359 38 1 1.3769 -4.7759 -3.5939 39 1 -0.4668 -5.6937 -1.5661 40 1 -0.5904 -4.1295 -2.4065 41 1 -0.2916 -3.7172 0.4005 42 1 -2.4914 -2.3227 1.0927 43 1 -2.5473 -3.9280 1.8597 44 1 -8.3098 -2.6999 1.9409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713501362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = 65.208181 kcal Electronic energy + Delta-G solvation = -27396.230363 eV Core-core repulsion = 23479.475176 eV Total energy + Delta-G solvation = -3916.755187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90772 -40.06754 -38.78405 -35.05248 -34.55358 -33.86708 -32.45796 -31.76347 -30.83810 -29.01626 -28.80622 -27.11460 -25.57443 -24.81030 -22.72835 -21.96091 -20.97326 -20.52953 -20.21962 -17.94001 -17.29286 -17.13274 -16.60335 -16.21418 -15.90999 -15.48358 -15.20214 -15.10272 -14.83105 -14.67789 -14.18969 -13.96640 -13.77261 -13.62249 -13.42356 -13.24040 -13.05833 -12.76105 -12.64040 -12.34664 -12.16403 -12.05548 -11.77966 -11.70743 -11.64094 -11.57629 -11.16689 -11.09244 -11.08567 -11.05409 -10.86423 -10.78677 -9.84792 -9.44306 -9.09959 -8.96899 -8.91113 -8.26694 -6.53197 -6.24649 -3.95433 0.17279 1.57450 2.29811 2.77269 2.97767 3.06723 3.20052 3.25693 3.28692 3.33041 3.48975 3.63349 4.09011 4.17331 4.18652 4.31837 4.36977 4.58154 4.64718 4.73612 4.82034 4.91642 4.98690 5.03548 5.10746 5.16299 5.19247 5.28945 5.34762 5.36539 5.39820 5.51483 5.58857 5.59682 5.72849 5.76955 5.83090 5.88339 6.06883 6.28242 6.38122 6.56481 6.60460 7.56201 7.61857 8.31817 8.57164 9.20896 10.82636 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.002989 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.885861 B = 9365.961603 C =11311.426936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.095 3.905 3 N -0.278 5.278 4 O 0.023 5.977 5 N -0.273 5.273 6 C 0.085 3.915 7 C 0.109 3.891 8 N -0.513 5.513 9 C 0.030 3.970 10 C -0.139 4.139 11 C -0.119 4.119 12 C 0.061 3.939 13 H 0.068 0.932 14 C 0.137 3.863 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.514 6.514 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.390 0.610 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.717 -1.820 -5.605 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 N -0.024 5.024 4 O -0.118 6.118 5 N -0.018 5.018 6 C -0.098 4.098 7 C -0.020 4.020 8 N -0.239 5.239 9 C -0.098 4.098 10 C -0.177 4.177 11 C -0.158 4.158 12 C -0.047 4.047 13 H 0.086 0.914 14 C 0.012 3.988 15 N -0.394 5.394 16 C 0.317 3.683 17 O -0.388 6.388 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.226 0.774 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.158 -1.381 -7.371 23.392 hybrid contribution 0.877 0.398 2.883 3.040 sum 23.034 -0.984 -4.488 23.488 Atomic orbital electron populations 1.20707 0.83495 1.06302 1.05276 1.24652 1.00665 0.88407 0.95054 1.80013 0.88706 1.19449 1.14273 1.93390 1.20756 1.13025 1.84599 1.79859 1.17567 0.91960 1.12369 1.24312 0.89858 0.98787 0.96867 1.21119 1.01791 0.86788 0.92296 1.63716 1.32512 1.18404 1.09238 1.23028 0.90403 0.98047 0.98280 1.22747 0.97550 0.95286 1.02133 1.22689 0.95733 1.00052 0.97277 1.22945 0.95834 0.86788 0.99161 0.91410 1.21294 0.89334 0.98573 0.89583 1.46143 1.06849 1.65205 1.21207 1.20286 0.81362 0.78273 0.88373 1.90714 1.62002 1.46593 1.39514 1.23544 1.06083 1.03007 0.97931 1.85447 0.90389 1.80621 1.26667 1.22855 0.94774 1.46452 1.04372 0.90954 1.24978 0.95454 0.95318 0.97754 1.70011 1.01030 1.44297 1.34864 0.86194 0.78073 0.79318 0.82069 1.20254 1.20772 1.19712 0.88184 0.88882 0.87823 0.87324 0.91160 0.90119 0.91599 0.90252 0.91235 0.89986 0.89676 0.91175 0.90230 0.77434 0.89318 0.89363 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.05 36.01 0.36 -0.45 16 2 C 0.09 0.94 7.19 -82.38 -0.59 0.35 16 3 N -0.28 -3.42 12.98 33.74 0.44 -2.98 16 4 O 0.02 0.29 13.71 12.02 0.16 0.46 16 5 N -0.27 -3.03 11.57 33.74 0.39 -2.64 16 6 C 0.08 0.79 5.68 -82.38 -0.47 0.32 16 7 C 0.11 0.76 4.74 -4.98 -0.02 0.74 16 8 N -0.51 -3.80 4.86 -224.82 -1.09 -4.89 16 9 C 0.03 0.22 6.23 -2.84 -0.02 0.20 16 10 C -0.14 -0.78 6.94 -24.91 -0.17 -0.95 16 11 C -0.12 -0.67 6.49 -24.59 -0.16 -0.83 16 12 C 0.06 0.41 2.69 -66.19 -0.18 0.23 16 13 H 0.07 0.39 7.68 -51.93 -0.40 -0.01 16 14 C 0.14 1.31 5.39 -4.04 -0.02 1.29 16 15 N -0.74 -8.16 5.35 -60.30 -0.32 -8.48 16 16 C 0.53 8.81 7.85 -10.99 -0.09 8.72 16 17 O -0.51 -10.81 15.84 5.56 0.09 -10.72 16 18 C -0.15 -2.81 6.16 36.00 0.22 -2.59 16 19 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 20 C -0.54 -14.62 9.50 30.94 0.29 -14.32 16 21 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 24 Si 0.92 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.83 7.77 -51.93 -0.40 0.42 16 31 H 0.11 0.64 5.06 -51.93 -0.26 0.38 16 32 H 0.07 0.42 7.95 -51.93 -0.41 0.00 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.54 5.74 -51.93 -0.30 0.25 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.52 8.06 -51.93 -0.42 0.11 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 41 H 0.39 3.24 5.49 -40.82 -0.22 3.01 16 42 H 0.09 1.42 8.14 -51.91 -0.42 0.99 16 43 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -34.43 378.63 -8.26 -42.69 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.19 Total: -1.13 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.94 Total: -5.34 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.15 Total: -43.72 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.25 Total: -10.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.43 -8.26 -42.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.896 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds