Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29953 * 125.30276 * 2 1 4 4 O 1.41875 * 107.41272 * 180.02562 * 3 2 1 5 5 N 1.41876 * 106.38870 * 359.78492 * 4 3 2 6 6 C 1.29957 * 107.41425 * 0.36754 * 5 4 3 7 7 C 1.50691 * 125.30365 * 179.89369 * 6 5 4 8 8 N 1.46899 * 109.47415 * 269.69131 * 7 6 5 9 9 C 1.47441 * 110.99730 * 53.44526 * 8 7 6 10 10 C 1.54315 * 107.23504 * 123.26112 * 9 8 7 11 11 C 1.55138 * 103.01832 * 22.28207 * 10 9 8 12 12 C 1.47847 * 111.00213 * 174.28958 * 8 7 6 13 13 H 1.08999 * 110.37325 * 332.57492 * 12 8 7 14 14 C 1.52992 * 110.37294 * 94.80768 * 12 8 7 15 15 N 1.46502 * 109.47259 * 298.73183 * 14 12 8 16 16 C 1.34780 * 120.00093 * 173.60827 * 15 14 12 17 17 O 1.21279 * 119.99785 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99955 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47059 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99929 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99505 * 0.02562 * 20 19 18 22 22 C 1.38791 * 119.99897 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00292 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00174 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47356 * 90.00014 * 24 22 20 26 26 H 1.48498 * 109.47484 * 210.00368 * 24 22 20 27 27 H 1.48507 * 109.46870 * 330.00201 * 24 22 20 28 28 H 1.08997 * 109.46794 * 269.99484 * 1 2 3 29 29 H 1.08999 * 109.46876 * 29.99917 * 1 2 3 30 30 H 1.09001 * 109.47090 * 149.99459 * 1 2 3 31 31 H 1.08999 * 109.47076 * 149.69333 * 7 6 5 32 32 H 1.09006 * 109.47591 * 29.69528 * 7 6 5 33 33 H 1.09010 * 109.89064 * 242.66525 * 9 8 7 34 34 H 1.08995 * 109.89095 * 3.68938 * 9 8 7 35 35 H 1.09001 * 110.71099 * 140.66302 * 10 9 8 36 36 H 1.08996 * 110.70488 * 263.90209 * 10 9 8 37 37 H 1.09001 * 110.99566 * 206.25710 * 11 10 9 38 38 H 1.09004 * 110.99403 * 82.43771 * 11 10 9 39 39 H 1.09000 * 109.47426 * 178.73384 * 14 12 8 40 40 H 1.09005 * 109.47659 * 58.73758 * 14 12 8 41 41 H 0.97000 * 119.99690 * 353.60659 * 15 14 12 42 42 H 1.09003 * 109.47164 * 59.99874 * 18 16 15 43 43 H 1.08995 * 109.46963 * 299.99520 * 18 16 15 44 44 H 0.96999 * 120.00248 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7935 0.0042 6 6 2.3213 -1.1499 -0.0007 7 6 1.8210 -2.5713 -0.0005 8 7 1.6574 -3.0331 -1.3854 9 6 2.8980 -2.8372 -2.1576 10 6 3.3081 -4.2140 -2.7212 11 6 1.9745 -5.0066 -2.7120 12 6 1.2984 -4.4668 -1.4270 13 1 1.6863 -4.9807 -0.5475 14 6 -0.2199 -4.6333 -1.5136 15 7 -0.8444 -4.0448 -0.3262 16 6 -2.1868 -3.9586 -0.2434 17 8 -2.8779 -4.3677 -1.1522 18 6 -2.8291 -3.3527 0.9778 19 16 -4.6290 -3.3795 0.7890 20 6 -5.1076 -2.6356 2.3130 21 1 -4.3546 -2.3237 3.0215 22 6 -6.4523 -2.4497 2.6023 23 7 -7.3700 -2.8295 1.7385 24 14 -6.9597 -1.6605 4.2175 25 1 -7.0493 -0.1886 4.0427 26 1 -8.2828 -2.1911 4.6337 27 1 -5.9502 -1.9746 5.2605 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 0.8612 -2.6186 0.5140 32 1 2.5402 -3.2096 0.5128 33 1 2.7192 -2.1398 -2.9762 34 1 3.6828 -2.4515 -1.5070 35 1 3.6911 -4.1162 -3.7370 36 1 4.0445 -4.6913 -2.0747 37 1 2.1577 -6.0784 -2.6359 38 1 1.3769 -4.7759 -3.5939 39 1 -0.4668 -5.6937 -1.5661 40 1 -0.5904 -4.1295 -2.4065 41 1 -0.2916 -3.7172 0.4005 42 1 -2.4914 -2.3227 1.0927 43 1 -2.5473 -3.9280 1.8597 44 1 -8.3098 -2.6999 1.9409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713501362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = 39.535643 kcal Electronic energy + Delta-G solvation = -27397.343608 eV Core-core repulsion = 23479.475176 eV Total energy + Delta-G solvation = -3917.868431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.69591 -40.89787 -39.85824 -35.84480 -35.57726 -34.62750 -34.52076 -32.41450 -31.87899 -29.94252 -29.72355 -27.74338 -27.59276 -25.66604 -23.47313 -22.62642 -21.70067 -21.37995 -21.14086 -19.74564 -18.05118 -17.87949 -17.65811 -17.30477 -16.86909 -16.82011 -16.35508 -16.18884 -15.89082 -15.67176 -15.41043 -14.93430 -14.67156 -14.42009 -14.30719 -14.26550 -14.06959 -13.67668 -13.64825 -13.13975 -13.10219 -13.05179 -12.91233 -12.85120 -12.60468 -12.56503 -12.36643 -12.26383 -12.19064 -11.85506 -11.69480 -11.66225 -11.58206 -11.08980 -10.82488 -10.16928 -9.99607 -9.52599 -8.57805 -8.29067 -6.05078 -0.63835 0.82257 1.33400 1.44967 1.45469 1.52667 1.62538 1.75259 1.98970 2.30788 2.38327 2.68141 2.80122 3.05573 3.38433 3.45778 3.63848 3.70693 3.77619 3.99389 4.06350 4.13095 4.15116 4.23821 4.30529 4.41361 4.42949 4.54518 4.57643 4.61691 4.67368 4.69641 4.76857 4.86817 5.00096 5.06408 5.09612 5.15533 5.32054 5.48416 5.51671 5.73356 5.79588 5.82334 6.25801 6.57476 7.13288 7.36038 8.79734 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.002989 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.885861 B = 9365.961603 C =11311.426936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.102 3.898 3 N -0.305 5.305 4 O -0.011 6.011 5 N -0.283 5.283 6 C 0.097 3.903 7 C 0.109 3.891 8 N -0.523 5.523 9 C 0.031 3.969 10 C -0.132 4.132 11 C -0.116 4.116 12 C 0.069 3.931 13 H 0.091 0.909 14 C 0.137 3.863 15 N -0.709 5.709 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.132 4.132 19 S -0.152 6.152 20 C -0.541 4.541 21 H 0.085 0.915 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.993 3.007 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.257 1.257 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.407 0.593 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.359 -2.447 -4.052 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 N -0.054 5.054 4 O -0.146 6.146 5 N -0.030 5.030 6 C -0.087 4.087 7 C -0.020 4.020 8 N -0.250 5.250 9 C -0.096 4.096 10 C -0.170 4.170 11 C -0.154 4.154 12 C -0.038 4.038 13 H 0.108 0.892 14 C 0.013 3.987 15 N -0.365 5.365 16 C 0.321 3.679 17 O -0.444 6.444 18 C -0.283 4.283 19 S 0.075 5.925 20 C -0.689 4.689 21 H 0.103 0.897 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.815 3.185 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.181 1.181 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.246 0.754 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.897 -1.980 -5.803 24.671 hybrid contribution 0.455 0.537 2.325 2.429 sum 24.352 -1.443 -3.478 24.641 Atomic orbital electron populations 1.20828 0.82068 1.06498 1.06337 1.25039 1.01413 0.88218 0.93375 1.79988 0.88782 1.20608 1.15989 1.93370 1.21364 1.14170 1.85676 1.79848 1.18561 0.91087 1.13466 1.24678 0.89186 0.99677 0.95116 1.21291 1.02878 0.85453 0.92363 1.63648 1.32810 1.19023 1.09505 1.22962 0.90041 0.98884 0.97730 1.22717 0.97681 0.94035 1.02577 1.22694 0.95360 1.01046 0.96320 1.22892 0.93544 0.86632 1.00778 0.89160 1.21403 0.91110 0.98245 0.87936 1.45861 1.04976 1.63522 1.22129 1.20023 0.82824 0.77923 0.87172 1.90709 1.63556 1.49068 1.41020 1.23408 0.99938 1.05386 0.99587 1.85654 0.98172 1.81050 1.27594 1.23210 0.95371 1.45864 1.04477 0.89690 1.26050 0.95558 0.95856 1.01598 1.70182 1.01367 1.46052 1.37254 0.85032 0.77735 0.78301 0.77414 1.19469 1.20779 1.18102 0.86514 0.88946 0.87349 0.85992 0.89211 0.91547 0.92426 0.89764 0.90211 0.88260 0.90449 0.90953 0.92030 0.75364 0.86512 0.87291 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.05 71.24 0.72 -0.69 16 2 C 0.10 1.90 7.19 43.49 0.31 2.22 16 3 N -0.31 -7.44 12.98 -47.15 -0.61 -8.05 16 4 O -0.01 -0.30 13.71 70.17 0.96 0.66 16 5 N -0.28 -6.02 11.57 -47.16 -0.55 -6.57 16 6 C 0.10 1.63 5.68 43.48 0.25 1.88 16 7 C 0.11 1.16 4.74 85.55 0.41 1.56 16 8 N -0.52 -6.35 4.86 -865.20 -4.21 -10.56 16 9 C 0.03 0.40 6.23 86.65 0.54 0.94 16 10 C -0.13 -1.13 6.94 31.77 0.22 -0.91 16 11 C -0.12 -0.97 6.49 31.98 0.21 -0.77 16 12 C 0.07 0.70 2.69 45.38 0.12 0.82 16 13 H 0.09 0.59 7.68 -2.39 -0.02 0.58 16 14 C 0.14 2.30 5.39 86.38 0.47 2.76 16 15 N -0.71 -13.59 5.35 -463.07 -2.48 -16.07 16 16 C 0.53 16.84 7.85 87.66 0.69 17.53 16 17 O -0.57 -23.77 15.84 -3.03 -0.05 -23.82 16 18 C -0.13 -4.51 6.16 71.23 0.44 -4.07 16 19 S -0.15 -7.88 20.57 -56.49 -1.16 -9.05 16 20 C -0.54 -29.18 9.50 67.95 0.65 -28.54 16 21 H 0.09 4.19 7.80 -2.91 -0.02 4.17 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 24 Si 0.99 42.06 29.55 68.60 2.03 44.08 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.45 7.77 -2.39 -0.02 1.43 16 31 H 0.12 0.93 5.06 -2.39 -0.01 0.91 16 32 H 0.09 0.68 7.95 -2.38 -0.02 0.66 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 0.85 5.74 -2.39 -0.01 0.84 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.80 8.06 -2.39 -0.02 0.78 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.32 8.12 -2.38 -0.02 1.30 16 41 H 0.41 5.05 5.49 -92.71 -0.51 4.54 16 42 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.11 3.31 8.14 -2.40 -0.02 3.29 16 44 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -78.02 378.63 0.22 -77.79 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.52 Total: 11.80 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 5.48 Total: -6.02 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -7.56 Total: -95.45 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.91 Total: -23.16 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.05 kcal Total: -78.02 0.22 -77.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713501362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.329 kcal (2) G-P(sol) polarization free energy of solvation -78.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds