Wall clock time and date at job start Sat Apr 11 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35003 * 127.27256 * 2 1 4 4 C 1.39490 * 111.68616 * 179.97438 * 3 2 1 5 5 C 1.47691 * 122.10427 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99876 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99678 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99934 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47355 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47392 * 54.99840 * 9 8 7 11 11 C 1.53003 * 109.46945 * 294.99481 * 9 8 7 12 12 C 1.53006 * 109.47452 * 174.99751 * 9 8 7 13 13 N 1.46898 * 109.47138 * 184.99841 * 12 9 8 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46680 * 60.00313 * 22 20 18 24 24 H 1.48496 * 109.46939 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47298 * 300.00205 * 22 20 18 26 26 N 1.30604 * 115.78701 * 0.24803 * 4 3 2 27 27 S 1.56144 * 109.80192 * 359.61206 * 26 4 3 28 28 H 1.09003 * 109.47210 * 90.00108 * 1 2 3 29 29 H 1.08994 * 109.46666 * 210.00288 * 1 2 3 30 30 H 1.09000 * 109.46875 * 330.00348 * 1 2 3 31 31 H 1.08009 * 124.15978 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00253 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.47613 * 59.99832 * 8 7 5 34 34 H 1.09003 * 109.47151 * 300.00236 * 8 7 5 35 35 H 1.08996 * 109.47132 * 299.99905 * 11 9 8 36 36 H 1.09000 * 109.46878 * 60.00403 * 11 9 8 37 37 H 1.08999 * 109.47096 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.46770 * 64.99788 * 12 9 8 39 39 H 1.08995 * 109.47019 * 305.00001 * 12 9 8 40 40 H 1.00901 * 111.00121 * 56.04666 * 13 12 9 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6682 0.6995 0.0006 5 6 4.7604 1.6937 0.0001 6 8 4.5012 2.8815 -0.0003 7 7 6.0444 1.2840 0.0013 8 6 7.1278 2.2701 0.0014 9 6 8.4759 1.5467 0.0021 10 1 8.5177 0.8553 -0.8394 11 6 8.6366 0.7688 1.3098 12 6 9.6049 2.5717 -0.1236 13 7 10.8908 1.8716 -0.2433 14 6 12.0006 2.8263 -0.3655 15 6 13.3003 2.0730 -0.4853 16 8 13.3019 0.8602 -0.4707 17 7 14.4609 2.7471 -0.6085 18 6 15.6433 2.0618 -0.7180 19 1 15.6448 0.9819 -0.7051 20 6 16.8398 2.7566 -0.8456 21 7 16.8380 4.0707 -0.8618 22 14 18.4509 1.8229 -0.9941 23 1 18.4104 0.9543 -2.1978 24 1 19.5726 2.7880 -1.1183 25 1 18.6503 0.9843 0.2150 26 7 3.8995 -0.5859 -0.0041 27 16 2.5473 -1.3667 0.0008 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9807 2.0982 -0.0004 32 1 6.2512 0.3363 0.0020 33 1 7.0501 2.8953 0.8909 34 1 7.0512 2.8942 -0.8890 35 1 8.5949 1.4603 2.1513 36 1 7.8323 0.0386 1.3993 37 1 9.5972 0.2538 1.3105 38 1 9.6184 3.2076 0.7616 39 1 9.4415 3.1854 -1.0094 40 1 10.8807 1.2270 -1.0195 41 1 11.8541 3.4421 -1.2529 42 1 12.0306 3.4636 0.5182 43 1 14.4596 3.7170 -0.6205 44 1 17.6733 4.5558 -0.9506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714387263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:15 Heat of formation + Delta-G solvation = -42.246747 kcal Electronic energy + Delta-G solvation = -25366.134219 eV Core-core repulsion = 21444.719437 eV Total energy + Delta-G solvation = -3921.414782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81765 -38.90863 -38.31359 -37.13904 -34.96675 -33.94390 -33.71881 -32.23670 -31.17782 -28.74872 -27.57505 -27.30529 -25.58574 -24.50710 -22.99286 -21.30941 -20.79430 -20.25929 -19.19048 -18.69410 -17.90132 -17.64825 -16.37794 -16.13517 -15.80317 -15.64130 -15.14970 -14.99975 -14.63550 -14.40057 -14.26884 -13.99792 -13.67274 -13.56239 -13.51792 -13.41496 -13.16506 -13.09089 -12.58398 -12.36831 -11.91955 -11.68473 -11.65935 -11.50538 -11.42940 -11.13026 -11.05451 -10.96116 -10.85705 -10.43370 -10.31487 -10.19985 -9.99145 -9.48796 -9.44804 -9.18122 -8.44758 -8.03854 -7.94426 -6.40370 -3.81286 0.09714 0.91309 1.32227 1.33680 2.80049 2.90018 3.21120 3.26691 3.31148 3.92529 4.06301 4.12159 4.31514 4.42815 4.66603 4.68792 4.72546 4.84031 4.91523 4.95847 5.15973 5.18415 5.27168 5.31501 5.35229 5.40242 5.47207 5.57289 5.70340 5.77051 5.84420 5.88647 5.93395 6.00288 6.06425 6.22390 6.28551 6.42585 7.17768 7.21663 7.56159 7.66713 7.82374 8.07452 8.62722 9.19049 9.55767 10.07302 10.77291 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001425 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.133998 B =19642.069072 C =20185.014135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.249 4.249 3 C -0.142 4.142 4 C 0.055 3.945 5 C 0.590 3.410 6 O -0.530 6.530 7 N -0.707 5.707 8 C 0.123 3.877 9 C -0.100 4.100 10 H 0.077 0.923 11 C -0.141 4.141 12 C 0.067 3.933 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.523 5.523 27 S 0.470 5.530 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.410 0.590 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.349 0.651 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.488 -6.164 1.636 34.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.379 4.379 3 C -0.174 4.174 4 C -0.120 4.120 5 C 0.370 3.630 6 O -0.406 6.406 7 N -0.358 5.358 8 C -0.001 4.001 9 C -0.119 4.119 10 H 0.096 0.904 11 C -0.198 4.198 12 C -0.064 4.064 13 N -0.298 5.298 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.357 5.357 27 S 0.625 5.375 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.189 0.811 32 H 0.246 0.754 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.168 0.832 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.226 0.774 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -32.616 -8.049 2.303 33.673 hybrid contribution 0.522 2.098 -1.004 2.384 sum -32.093 -5.950 1.300 32.666 Atomic orbital electron populations 1.20230 0.85931 1.03827 1.03388 1.26141 1.03494 1.00135 1.08159 1.21275 0.90292 1.02034 1.03778 1.21063 0.94956 0.89235 1.06721 1.17229 0.81930 0.86784 0.77008 1.90819 1.83543 1.16044 1.50158 1.45843 1.04956 1.11455 1.73580 1.21493 0.84895 0.90910 1.02788 1.21344 0.92441 0.97893 1.00235 0.90433 1.21765 1.02617 0.99721 0.95716 1.21889 0.88690 0.95000 1.00791 1.60029 1.00673 1.18203 1.50921 1.21667 0.91100 0.94395 1.01016 1.19812 0.84791 0.88383 0.84388 1.90517 1.86804 1.13777 1.55703 1.41856 1.05194 1.09209 1.63768 1.19658 0.82920 0.93359 1.47073 0.87985 1.25258 0.99681 0.95626 0.97323 1.69608 1.28508 1.05935 1.50279 0.85915 0.80467 0.78755 0.79066 1.19940 1.20979 1.19884 1.72243 1.29319 1.10653 1.23522 1.80546 0.87438 1.12160 1.57350 0.90038 0.90574 0.90112 0.81132 0.75375 0.90798 0.91092 0.92754 0.93649 0.90338 0.90671 0.95226 0.83220 0.93873 0.89581 0.77450 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.46 36.01 0.38 0.17 16 2 C -0.25 -1.46 6.58 -35.46 -0.23 -1.69 16 3 C -0.14 -1.16 9.93 -40.26 -0.40 -1.56 16 4 C 0.05 0.55 6.66 -84.06 -0.56 -0.01 16 5 C 0.59 6.92 7.81 -12.40 -0.10 6.82 16 6 O -0.53 -7.61 16.66 5.30 0.09 -7.52 16 7 N -0.71 -7.23 5.28 -61.30 -0.32 -7.55 16 8 C 0.12 1.24 5.06 -4.05 -0.02 1.22 16 9 C -0.10 -1.03 2.57 -90.62 -0.23 -1.26 16 10 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.14 -1.53 8.95 37.16 0.33 -1.20 16 12 C 0.07 0.79 5.07 -3.82 -0.02 0.77 16 13 N -0.67 -10.49 5.58 -115.05 -0.64 -11.13 16 14 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 15 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 16 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 17 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 18 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 22 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 N -0.52 -4.78 10.71 24.85 0.27 -4.51 16 27 S 0.47 2.78 23.20 -107.50 -2.49 0.29 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.17 1.31 7.99 -52.48 -0.42 0.90 16 32 H 0.41 3.82 7.12 -40.82 -0.29 3.53 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.44 7.18 -51.93 -0.37 0.06 16 37 H 0.08 1.03 7.75 -51.93 -0.40 0.62 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -33.60 390.08 -9.01 -42.61 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.30 Total: 13.58 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -1.21 Total: 6.41 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.03 Total: -61.60 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.18 Total: -23.33 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.49 Total: 0.29 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.60 -9.01 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714387263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.365 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds