Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35003 * 127.27256 * 2 1 4 4 C 1.39490 * 111.68616 * 179.97438 * 3 2 1 5 5 C 1.47691 * 122.10427 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99876 * 0.02562 * 5 4 3 7 7 N 1.34773 * 119.99678 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99934 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47355 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47392 * 54.99840 * 9 8 7 11 11 C 1.53003 * 109.46945 * 294.99481 * 9 8 7 12 12 C 1.53006 * 109.47452 * 174.99751 * 9 8 7 13 13 N 1.46898 * 109.47138 * 184.99841 * 12 9 8 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00466 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46680 * 60.00313 * 22 20 18 24 24 H 1.48496 * 109.46939 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47298 * 300.00205 * 22 20 18 26 26 N 1.30604 * 115.78701 * 0.24803 * 4 3 2 27 27 S 1.56144 * 109.80192 * 359.61206 * 26 4 3 28 28 H 1.09003 * 109.47210 * 90.00108 * 1 2 3 29 29 H 1.08994 * 109.46666 * 210.00288 * 1 2 3 30 30 H 1.09000 * 109.46875 * 330.00348 * 1 2 3 31 31 H 1.08009 * 124.15978 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00253 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.47613 * 59.99832 * 8 7 5 34 34 H 1.09003 * 109.47151 * 300.00236 * 8 7 5 35 35 H 1.08996 * 109.47132 * 299.99905 * 11 9 8 36 36 H 1.09000 * 109.46878 * 60.00403 * 11 9 8 37 37 H 1.08999 * 109.47096 * 180.02562 * 11 9 8 38 38 H 1.08997 * 109.46770 * 64.99788 * 12 9 8 39 39 H 1.08995 * 109.47019 * 305.00001 * 12 9 8 40 40 H 1.00901 * 111.00121 * 56.04666 * 13 12 9 41 41 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 42 42 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 43 43 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6682 0.6995 0.0006 5 6 4.7604 1.6937 0.0001 6 8 4.5012 2.8815 -0.0003 7 7 6.0444 1.2840 0.0013 8 6 7.1278 2.2701 0.0014 9 6 8.4759 1.5467 0.0021 10 1 8.5177 0.8553 -0.8394 11 6 8.6366 0.7688 1.3098 12 6 9.6049 2.5717 -0.1236 13 7 10.8908 1.8716 -0.2433 14 6 12.0006 2.8263 -0.3655 15 6 13.3003 2.0730 -0.4853 16 8 13.3019 0.8602 -0.4707 17 7 14.4609 2.7471 -0.6085 18 6 15.6433 2.0618 -0.7180 19 1 15.6448 0.9819 -0.7051 20 6 16.8398 2.7566 -0.8456 21 7 16.8380 4.0707 -0.8618 22 14 18.4509 1.8229 -0.9941 23 1 18.4104 0.9543 -2.1978 24 1 19.5726 2.7880 -1.1183 25 1 18.6503 0.9843 0.2150 26 7 3.8995 -0.5859 -0.0041 27 16 2.5473 -1.3667 0.0008 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9807 2.0982 -0.0004 32 1 6.2512 0.3363 0.0020 33 1 7.0501 2.8953 0.8909 34 1 7.0512 2.8942 -0.8890 35 1 8.5949 1.4603 2.1513 36 1 7.8323 0.0386 1.3993 37 1 9.5972 0.2538 1.3105 38 1 9.6184 3.2076 0.7616 39 1 9.4415 3.1854 -1.0094 40 1 10.8807 1.2270 -1.0195 41 1 11.8541 3.4421 -1.2529 42 1 12.0306 3.4636 0.5182 43 1 14.4596 3.7170 -0.6205 44 1 17.6733 4.5558 -0.9506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714387263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -68.014926 kcal Electronic energy + Delta-G solvation = -25367.251611 eV Core-core repulsion = 21444.719437 eV Total energy + Delta-G solvation = -3922.532174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55498 -40.18516 -39.59976 -38.23170 -36.23218 -35.70609 -34.33650 -33.38606 -33.09310 -29.26070 -28.88682 -28.17754 -26.83957 -25.83193 -24.18794 -21.98889 -21.67158 -21.17431 -20.83691 -19.89601 -19.30585 -18.39812 -17.81395 -17.04168 -17.01189 -16.76892 -16.49172 -16.09731 -15.95593 -15.64747 -15.25820 -15.17883 -14.99056 -14.55428 -14.39914 -14.03452 -13.92576 -13.79800 -13.55384 -13.49982 -13.41229 -13.16666 -13.03157 -12.83945 -12.43273 -12.34895 -12.13040 -12.05630 -12.01154 -11.86761 -11.75253 -11.49870 -11.15525 -10.49050 -10.34343 -10.28049 -10.01499 -9.75664 -9.29956 -8.46367 -5.95358 -0.49424 0.42734 0.66314 0.76607 1.40049 1.41823 1.52858 2.00817 2.05789 2.09384 2.29720 2.93965 3.20950 3.51759 3.55513 3.78988 3.83284 3.95914 4.03079 4.17966 4.28747 4.33047 4.46263 4.48266 4.58046 4.60411 4.68965 4.72648 4.76895 4.80658 4.89755 4.93483 5.04153 5.15831 5.19891 5.26944 5.36976 5.40727 5.48395 5.88497 6.10087 6.35212 6.41795 6.60333 6.98467 7.12582 7.56495 8.11741 8.70764 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038604 B = 0.001425 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.133998 B =19642.069072 C =20185.014135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.237 4.237 3 C -0.164 4.164 4 C 0.033 3.967 5 C 0.585 3.415 6 O -0.565 6.565 7 N -0.700 5.700 8 C 0.129 3.871 9 C -0.088 4.088 10 H 0.080 0.920 11 C -0.136 4.136 12 C 0.068 3.932 13 N -0.678 5.678 14 C 0.065 3.935 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 N -0.552 5.552 27 S 0.527 5.473 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.415 0.585 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.344 0.656 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.024 -6.658 1.558 35.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.367 4.367 3 C -0.195 4.195 4 C -0.140 4.140 5 C 0.368 3.632 6 O -0.444 6.444 7 N -0.352 5.352 8 C 0.005 3.995 9 C -0.107 4.107 10 H 0.099 0.901 11 C -0.193 4.193 12 C -0.061 4.061 13 N -0.310 5.310 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.197 1.197 26 N -0.389 5.389 27 S 0.683 5.317 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.252 0.748 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -34.164 -8.525 2.229 35.282 hybrid contribution 0.868 2.148 -0.968 2.511 sum -33.296 -6.377 1.262 33.925 Atomic orbital electron populations 1.20429 0.83555 1.05118 1.04596 1.26542 1.04981 0.99365 1.05852 1.21323 0.90108 1.02719 1.05391 1.20910 0.94972 0.89248 1.08834 1.17555 0.82591 0.86786 0.76289 1.90784 1.84129 1.17490 1.51978 1.45810 1.04718 1.11702 1.72945 1.21395 0.84584 0.90786 1.02693 1.21203 0.92001 0.97460 1.00027 0.90133 1.21698 1.01726 0.99858 0.96048 1.21949 0.87159 0.95293 1.01701 1.60021 1.01720 1.18363 1.50902 1.21526 0.88308 0.94071 1.02829 1.20890 0.86212 0.88269 0.82139 1.90485 1.87700 1.15847 1.56914 1.41929 1.05324 1.09340 1.64455 1.19647 0.84744 0.92750 1.49456 0.90301 1.26037 1.02347 0.96531 0.96259 1.69670 1.29608 1.06842 1.49986 0.84989 0.76664 0.77765 0.78922 1.19673 1.19465 1.19741 1.72006 1.32010 1.10532 1.24336 1.80288 0.85715 1.10682 1.55055 0.88707 0.88596 0.89534 0.81414 0.74805 0.91013 0.91109 0.92722 0.92526 0.92595 0.90038 0.93810 0.83737 0.91571 0.87850 0.76978 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.46 71.24 0.75 0.52 16 2 C -0.24 -2.35 6.58 24.94 0.16 -2.19 16 3 C -0.16 -2.63 9.93 21.83 0.22 -2.41 16 4 C 0.03 0.66 6.66 42.13 0.28 0.94 16 5 C 0.59 13.94 7.81 86.74 0.68 14.62 16 6 O -0.57 -16.67 16.66 -3.96 -0.07 -16.73 16 7 N -0.70 -14.16 5.28 -466.14 -2.46 -16.62 16 8 C 0.13 2.52 5.06 86.38 0.44 2.95 16 9 C -0.09 -1.72 2.57 -10.79 -0.03 -1.75 16 10 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 11 C -0.14 -2.88 8.95 71.98 0.64 -2.23 16 12 C 0.07 1.52 5.07 86.31 0.44 1.96 16 13 N -0.68 -20.78 5.58 -517.92 -2.89 -23.67 16 14 C 0.07 2.22 6.17 85.56 0.53 2.75 16 15 C 0.44 20.93 7.82 87.66 0.69 21.61 16 16 O -0.62 -34.67 15.78 -3.06 -0.05 -34.72 16 17 N -0.57 -29.68 5.29 -306.99 -1.62 -31.30 16 18 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.99 13.05 21.66 0.28 -49.70 16 22 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 N -0.55 -9.67 10.71 -75.30 -0.81 -10.48 16 27 S 0.53 5.26 23.20 -56.49 -1.31 3.95 16 28 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.17 2.66 7.99 -2.91 -0.02 2.64 16 32 H 0.41 7.54 7.12 -92.71 -0.66 6.88 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.05 7.18 -2.39 -0.02 1.03 16 37 H 0.05 1.46 7.75 -2.39 -0.02 1.44 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.34 11.08 8.43 -89.69 -0.76 10.32 16 41 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 44 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -73.67 390.08 -1.92 -75.58 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -1.09 Total: 40.36 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.07 Total: 18.12 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -7.50 Total: -131.77 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.11 Total: -51.45 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.31 Total: 3.95 kcal Total: -73.67 -1.92 -75.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714387263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.569 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds