Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35001 * 127.27357 * 2 1 4 4 C 1.39477 * 111.68405 * 179.97438 * 3 2 1 5 5 C 1.47700 * 122.10494 * 179.97438 * 4 3 2 6 6 O 1.21573 * 119.99482 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00233 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99828 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47070 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47050 * 305.00134 * 9 8 7 11 11 C 1.52999 * 109.46626 * 64.99833 * 9 8 7 12 12 C 1.52997 * 109.47164 * 185.00131 * 9 8 7 13 13 N 1.46898 * 109.46971 * 175.00074 * 12 9 8 14 14 C 1.46904 * 111.00099 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47078 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00300 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99827 * 180.02562 * 15 14 13 18 18 C 1.37088 * 119.99720 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00559 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99818 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47157 * 90.00055 * 22 20 18 24 24 H 1.48497 * 109.47315 * 209.99797 * 22 20 18 25 25 H 1.48501 * 109.47362 * 330.00465 * 22 20 18 26 26 N 1.30603 * 115.79453 * 0.24986 * 4 3 2 27 27 S 1.56145 * 109.79931 * 359.60921 * 26 4 3 28 28 H 1.09000 * 109.47499 * 89.99903 * 1 2 3 29 29 H 1.09005 * 109.47096 * 209.99865 * 1 2 3 30 30 H 1.08997 * 109.47199 * 329.99483 * 1 2 3 31 31 H 1.08004 * 124.15509 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99767 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.47055 * 60.00770 * 8 7 5 34 34 H 1.08992 * 109.47401 * 300.00078 * 8 7 5 35 35 H 1.08993 * 109.47839 * 299.99931 * 11 9 8 36 36 H 1.09000 * 109.47160 * 60.00369 * 11 9 8 37 37 H 1.09002 * 109.46719 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47096 * 295.00066 * 12 9 8 39 39 H 1.08994 * 109.47065 * 55.00225 * 12 9 8 40 40 H 1.00902 * 110.99925 * 56.04842 * 13 12 9 41 41 H 1.08994 * 109.47045 * 300.00696 * 14 13 12 42 42 H 1.09000 * 109.46462 * 60.00067 * 14 13 12 43 43 H 0.96996 * 119.99872 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00317 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6681 0.6994 0.0006 5 6 4.7604 1.6936 0.0001 6 8 4.5012 2.8814 -0.0003 7 7 6.0444 1.2840 0.0013 8 6 7.1278 2.2701 0.0014 9 6 8.4760 1.5466 0.0021 10 1 8.5171 0.8556 0.8441 11 6 8.6374 0.7679 -1.3050 12 6 9.6048 2.5717 0.1280 13 7 10.8906 1.8717 0.2490 14 6 12.0003 2.8264 0.3715 15 6 13.2998 2.0732 0.4940 16 8 13.3014 0.8604 0.4801 17 7 14.4602 2.7473 0.6190 18 6 15.6424 2.0620 0.7298 19 1 15.6439 0.9821 0.7174 20 6 16.8388 2.7569 0.8582 21 7 16.8371 4.0710 0.8727 22 14 18.4496 1.8234 1.0099 23 1 19.0168 1.5916 -0.3428 24 1 19.4081 2.6183 1.8190 25 1 18.2045 0.5180 1.6741 26 7 3.8995 -0.5859 -0.0041 27 16 2.5473 -1.3668 0.0008 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.9806 2.0981 0.0004 32 1 6.2511 0.3363 0.0020 33 1 7.0500 2.8951 0.8910 34 1 7.0512 2.8941 -0.8889 35 1 7.8333 0.0377 -1.3947 36 1 8.5963 1.4589 -2.1470 37 1 9.5977 0.2522 -1.3043 38 1 9.6190 3.2071 -0.7576 39 1 9.4407 3.1859 1.0133 40 1 11.0364 1.2462 -0.5292 41 1 12.0309 3.4633 -0.5124 42 1 11.8530 3.4427 1.2584 43 1 14.4589 3.7172 0.6297 44 1 17.6722 4.5561 0.9627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714387264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = -41.971632 kcal Electronic energy + Delta-G solvation = -25371.327229 eV Core-core repulsion = 21449.924377 eV Total energy + Delta-G solvation = -3921.402852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81912 -38.92359 -38.32758 -37.18977 -34.97302 -33.94401 -33.71916 -32.21882 -31.17564 -28.74914 -27.60240 -27.37246 -25.68610 -24.50684 -23.02701 -21.31661 -20.72048 -20.17003 -19.22650 -18.69210 -17.90745 -17.65499 -16.57414 -16.10461 -15.81880 -15.61189 -15.25755 -14.98988 -14.56170 -14.40209 -14.22519 -14.03875 -13.72169 -13.54858 -13.53288 -13.37089 -13.16920 -12.96785 -12.74920 -12.60664 -12.04305 -11.68323 -11.57352 -11.53397 -11.42945 -11.18534 -11.06546 -10.95349 -10.88057 -10.38515 -10.31922 -10.20515 -9.99066 -9.49868 -9.44918 -9.18187 -8.45014 -8.04901 -7.94620 -6.40542 -3.81362 0.09782 0.91381 1.32350 1.33741 2.79989 2.90079 3.18693 3.27315 3.33458 3.92301 4.06463 4.12356 4.32074 4.42741 4.66068 4.68857 4.72577 4.79814 4.89768 4.91564 5.14662 5.16109 5.26790 5.31582 5.37429 5.40224 5.43219 5.52735 5.61183 5.74894 5.81010 5.84978 5.86976 6.00192 6.04745 6.14224 6.22392 6.28951 7.17685 7.22099 7.56294 7.67471 7.82350 8.07564 8.62632 9.19049 9.55674 10.07170 10.77213 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038571 B = 0.001425 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.756939 B =19642.857821 C =20185.113089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.249 4.249 3 C -0.142 4.142 4 C 0.055 3.945 5 C 0.590 3.410 6 O -0.530 6.530 7 N -0.707 5.707 8 C 0.124 3.876 9 C -0.102 4.102 10 H 0.090 0.910 11 C -0.153 4.153 12 C 0.067 3.933 13 N -0.668 5.668 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 N -0.523 5.523 27 S 0.470 5.530 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.410 0.590 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.349 0.651 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.432 -6.149 -3.408 34.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.379 4.379 3 C -0.174 4.174 4 C -0.120 4.120 5 C 0.371 3.629 6 O -0.405 6.405 7 N -0.359 5.359 8 C 0.000 4.000 9 C -0.121 4.121 10 H 0.108 0.892 11 C -0.211 4.211 12 C -0.064 4.064 13 N -0.302 5.302 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 N -0.357 5.357 27 S 0.625 5.375 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.189 0.811 32 H 0.246 0.754 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.169 0.831 41 H 0.062 0.938 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.697 -8.058 -2.722 33.785 hybrid contribution 0.715 2.115 -0.803 2.373 sum -31.981 -5.944 -3.525 32.720 Atomic orbital electron populations 1.20230 0.85934 1.03837 1.03379 1.26141 1.03492 1.00132 1.08159 1.21270 0.90294 1.02034 1.03775 1.21061 0.94956 0.89236 1.06721 1.17228 0.81926 0.86783 0.77003 1.90818 1.83540 1.16046 1.50142 1.45844 1.04962 1.11448 1.73604 1.21478 0.84806 0.90888 1.02824 1.21368 0.92597 0.98213 0.99924 0.89182 1.21907 1.02512 1.00158 0.96478 1.21873 0.89020 0.94875 1.00585 1.60097 0.99924 1.19429 1.50724 1.21672 0.90986 0.94326 1.01267 1.19817 0.84690 0.88383 0.84498 1.90517 1.86742 1.13776 1.55770 1.41861 1.05194 1.09213 1.63762 1.19708 0.82890 0.93393 1.46951 0.87924 1.25259 0.99692 0.95627 0.97339 1.69612 1.28405 1.05940 1.50361 0.85857 0.80875 0.79267 0.78280 1.20440 1.20920 1.19406 1.72244 1.29321 1.10649 1.23525 1.80548 0.87443 1.12160 1.57349 0.90045 0.90571 0.90110 0.81131 0.75383 0.90804 0.91002 0.92693 0.92618 0.91335 0.95120 0.90707 0.83051 0.93842 0.89546 0.77445 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.46 36.01 0.38 0.17 16 2 C -0.25 -1.45 6.58 -35.46 -0.23 -1.69 16 3 C -0.14 -1.16 9.92 -40.27 -0.40 -1.56 16 4 C 0.05 0.55 6.66 -84.06 -0.56 -0.01 16 5 C 0.59 6.90 7.81 -12.40 -0.10 6.80 16 6 O -0.53 -7.59 16.66 5.30 0.09 -7.50 16 7 N -0.71 -7.19 5.28 -61.30 -0.32 -7.51 16 8 C 0.12 1.24 5.06 -4.04 -0.02 1.22 16 9 C -0.10 -1.05 2.63 -90.62 -0.24 -1.29 16 10 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.15 -1.52 8.84 37.16 0.33 -1.19 16 12 C 0.07 0.80 5.14 -3.83 -0.02 0.78 16 13 N -0.67 -10.74 6.12 -115.06 -0.70 -11.45 16 14 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 15 C 0.44 10.52 7.82 -10.98 -0.09 10.44 16 16 O -0.58 -16.00 15.78 5.55 0.09 -15.91 16 17 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 18 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 22 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 N -0.52 -4.77 10.71 24.84 0.27 -4.50 16 27 S 0.47 2.78 23.20 -107.50 -2.49 0.28 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.17 1.31 7.99 -52.48 -0.42 0.89 16 32 H 0.41 3.78 7.12 -40.82 -0.29 3.49 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.49 7.18 -51.93 -0.37 0.12 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.76 6.68 -51.93 -0.35 0.42 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.35 5.76 6.68 -39.29 -0.26 5.50 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -33.88 387.82 -8.99 -42.87 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.18 Total: 13.72 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.22 Total: 6.45 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.10 Total: -61.92 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.18 Total: -23.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.49 Total: 0.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.88 -8.99 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714387264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.902 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds