Wall clock time and date at job start Sat Apr 11 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35001 * 127.27357 * 2 1 4 4 C 1.39477 * 111.68405 * 179.97438 * 3 2 1 5 5 C 1.47700 * 122.10494 * 179.97438 * 4 3 2 6 6 O 1.21573 * 119.99482 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00233 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99828 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47070 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47050 * 305.00134 * 9 8 7 11 11 C 1.52999 * 109.46626 * 64.99833 * 9 8 7 12 12 C 1.52997 * 109.47164 * 185.00131 * 9 8 7 13 13 N 1.46898 * 109.46971 * 175.00074 * 12 9 8 14 14 C 1.46904 * 111.00099 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47078 * 179.97438 * 14 13 12 16 16 O 1.21290 * 120.00300 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99827 * 180.02562 * 15 14 13 18 18 C 1.37088 * 119.99720 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00559 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99818 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47157 * 90.00055 * 22 20 18 24 24 H 1.48497 * 109.47315 * 209.99797 * 22 20 18 25 25 H 1.48501 * 109.47362 * 330.00465 * 22 20 18 26 26 N 1.30603 * 115.79453 * 0.24986 * 4 3 2 27 27 S 1.56145 * 109.79931 * 359.60921 * 26 4 3 28 28 H 1.09000 * 109.47499 * 89.99903 * 1 2 3 29 29 H 1.09005 * 109.47096 * 209.99865 * 1 2 3 30 30 H 1.08997 * 109.47199 * 329.99483 * 1 2 3 31 31 H 1.08004 * 124.15509 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99767 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.47055 * 60.00770 * 8 7 5 34 34 H 1.08992 * 109.47401 * 300.00078 * 8 7 5 35 35 H 1.08993 * 109.47839 * 299.99931 * 11 9 8 36 36 H 1.09000 * 109.47160 * 60.00369 * 11 9 8 37 37 H 1.09002 * 109.46719 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47096 * 295.00066 * 12 9 8 39 39 H 1.08994 * 109.47065 * 55.00225 * 12 9 8 40 40 H 1.00902 * 110.99925 * 56.04842 * 13 12 9 41 41 H 1.08994 * 109.47045 * 300.00696 * 14 13 12 42 42 H 1.09000 * 109.46462 * 60.00067 * 14 13 12 43 43 H 0.96996 * 119.99872 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00317 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0743 0.0000 4 6 3.6681 0.6994 0.0006 5 6 4.7604 1.6936 0.0001 6 8 4.5012 2.8814 -0.0003 7 7 6.0444 1.2840 0.0013 8 6 7.1278 2.2701 0.0014 9 6 8.4760 1.5466 0.0021 10 1 8.5171 0.8556 0.8441 11 6 8.6374 0.7679 -1.3050 12 6 9.6048 2.5717 0.1280 13 7 10.8906 1.8717 0.2490 14 6 12.0003 2.8264 0.3715 15 6 13.2998 2.0732 0.4940 16 8 13.3014 0.8604 0.4801 17 7 14.4602 2.7473 0.6190 18 6 15.6424 2.0620 0.7298 19 1 15.6439 0.9821 0.7174 20 6 16.8388 2.7569 0.8582 21 7 16.8371 4.0710 0.8727 22 14 18.4496 1.8234 1.0099 23 1 19.0168 1.5916 -0.3428 24 1 19.4081 2.6183 1.8190 25 1 18.2045 0.5180 1.6741 26 7 3.8995 -0.5859 -0.0041 27 16 2.5473 -1.3668 0.0008 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.9806 2.0981 0.0004 32 1 6.2511 0.3363 0.0020 33 1 7.0500 2.8951 0.8910 34 1 7.0512 2.8941 -0.8889 35 1 7.8333 0.0377 -1.3947 36 1 8.5963 1.4589 -2.1470 37 1 9.5977 0.2522 -1.3043 38 1 9.6190 3.2071 -0.7576 39 1 9.4407 3.1859 1.0133 40 1 11.0364 1.2462 -0.5292 41 1 12.0309 3.4633 -0.5124 42 1 11.8530 3.4427 1.2584 43 1 14.4589 3.7172 0.6297 44 1 17.6722 4.5561 0.9627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714387264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:17 Heat of formation + Delta-G solvation = -68.120706 kcal Electronic energy + Delta-G solvation = -25372.461138 eV Core-core repulsion = 21449.924377 eV Total energy + Delta-G solvation = -3922.536761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55586 -40.20497 -39.60454 -38.29046 -36.23229 -35.71742 -34.33077 -33.38870 -33.07764 -29.26342 -28.87148 -28.24809 -26.90178 -25.87235 -24.21399 -21.99790 -21.52927 -21.17882 -20.83050 -19.91492 -19.30407 -18.39433 -17.93012 -17.22725 -16.86979 -16.83121 -16.47171 -16.14921 -15.89409 -15.65965 -15.40035 -15.10325 -14.89431 -14.56002 -14.35976 -14.04355 -13.94718 -13.80737 -13.59202 -13.50762 -13.46459 -13.33925 -13.08715 -12.80067 -12.42345 -12.35040 -12.14936 -12.10547 -11.89005 -11.87436 -11.79300 -11.50912 -11.15862 -10.48968 -10.35393 -10.27890 -10.01960 -9.75623 -9.33031 -8.46917 -5.95855 -0.49341 0.42797 0.66460 0.76679 1.37951 1.41802 1.54723 2.00874 2.04748 2.09521 2.29464 2.93775 3.20373 3.51757 3.55685 3.78544 3.86724 3.91071 3.95828 4.17965 4.28768 4.32794 4.46060 4.49856 4.54605 4.57485 4.67643 4.71453 4.76779 4.76984 4.89589 4.91078 4.97007 5.15951 5.19090 5.25489 5.30743 5.39004 5.40647 5.88120 6.09654 6.35431 6.41352 6.59773 6.98563 7.12146 7.55746 8.10969 8.70467 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038571 B = 0.001425 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.756939 B =19642.857821 C =20185.113089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.237 4.237 3 C -0.164 4.164 4 C 0.033 3.967 5 C 0.585 3.415 6 O -0.565 6.565 7 N -0.700 5.700 8 C 0.130 3.870 9 C -0.089 4.089 10 H 0.083 0.917 11 C -0.150 4.150 12 C 0.068 3.932 13 N -0.682 5.682 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.273 1.273 26 N -0.552 5.552 27 S 0.527 5.473 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.345 0.655 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.873 -6.617 -3.597 35.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.367 4.367 3 C -0.195 4.195 4 C -0.140 4.140 5 C 0.368 3.632 6 O -0.444 6.444 7 N -0.352 5.352 8 C 0.006 3.994 9 C -0.109 4.109 10 H 0.101 0.899 11 C -0.207 4.207 12 C -0.062 4.062 13 N -0.316 5.316 14 C -0.069 4.069 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 N -0.389 5.389 27 S 0.682 5.318 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.165 0.835 41 H 0.085 0.915 42 H 0.122 0.878 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -34.149 -8.507 -2.913 35.313 hybrid contribution 1.036 2.161 -0.749 2.511 sum -33.113 -6.346 -3.662 33.914 Atomic orbital electron populations 1.20429 0.83556 1.05110 1.04606 1.26541 1.04979 0.99362 1.05852 1.21318 0.90107 1.02721 1.05389 1.20910 0.94974 0.89249 1.08828 1.17555 0.82586 0.86787 0.76289 1.90783 1.84125 1.17488 1.51968 1.45811 1.04721 1.11697 1.72954 1.21384 0.84519 0.90767 1.02717 1.21210 0.92127 0.97641 0.99878 0.89912 1.21871 1.02125 1.00342 0.96385 1.21946 0.87417 0.95219 1.01571 1.60093 1.00810 1.19688 1.50979 1.21540 0.88173 0.94017 1.03131 1.20891 0.86112 0.88266 0.82300 1.90485 1.87638 1.15858 1.57028 1.41929 1.05310 1.09347 1.64400 1.19683 0.84711 0.92748 1.49397 0.90309 1.26040 1.02357 0.96532 0.96247 1.69672 1.29559 1.06846 1.50020 0.84925 0.76909 0.77880 0.78598 1.19566 1.19521 1.19810 1.72007 1.32008 1.10530 1.24339 1.80290 0.85722 1.10687 1.55063 0.88677 0.88612 0.89548 0.81410 0.74813 0.91087 0.90965 0.91746 0.92080 0.92616 0.93730 0.89990 0.83526 0.91496 0.87767 0.76954 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.46 71.24 0.75 0.51 16 2 C -0.24 -2.36 6.58 24.94 0.16 -2.20 16 3 C -0.16 -2.63 9.92 21.82 0.22 -2.41 16 4 C 0.03 0.66 6.66 42.13 0.28 0.94 16 5 C 0.59 13.96 7.81 86.74 0.68 14.64 16 6 O -0.56 -16.67 16.66 -3.95 -0.07 -16.73 16 7 N -0.70 -14.19 5.28 -466.11 -2.46 -16.65 16 8 C 0.13 2.54 5.06 86.38 0.44 2.98 16 9 C -0.09 -1.77 2.63 -10.79 -0.03 -1.80 16 10 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 11 C -0.15 -2.86 8.84 71.98 0.64 -2.22 16 12 C 0.07 1.54 5.14 86.30 0.44 1.98 16 13 N -0.68 -21.36 6.12 -517.95 -3.17 -24.53 16 14 C 0.06 2.20 6.17 85.56 0.53 2.73 16 15 C 0.44 21.04 7.82 87.66 0.69 21.72 16 16 O -0.62 -34.94 15.78 -3.06 -0.05 -34.99 16 17 N -0.57 -29.72 5.29 -306.99 -1.62 -31.35 16 18 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 21 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 22 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 N -0.55 -9.69 10.71 -75.31 -0.81 -10.49 16 27 S 0.53 5.27 23.20 -56.49 -1.31 3.96 16 28 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 -0.06 8.14 -2.38 -0.02 -0.08 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.17 2.66 7.99 -2.91 -0.02 2.64 16 32 H 0.41 7.56 7.12 -92.71 -0.66 6.90 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.10 7.18 -2.39 -0.02 1.08 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 1.22 6.68 -2.39 -0.02 1.21 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.34 11.29 6.68 -89.69 -0.60 10.69 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 44 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -74.13 387.82 -2.04 -76.17 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.93 Total: 40.85 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 6.07 Total: 18.22 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -7.78 Total: -132.72 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.11 Total: -51.72 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.31 Total: 3.96 kcal Total: -74.13 -2.04 -76.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714387264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.048 kcal (2) G-P(sol) polarization free energy of solvation -74.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds