Wall clock time and date at job start Sat Apr 11 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29516 * 121.53424 * 2 1 4 4 S 1.69475 * 107.84600 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.02858 * 359.80633 * 4 3 2 6 6 C 1.37902 * 105.36209 * 0.32597 * 5 4 3 7 7 C 1.47339 * 123.08573 * 179.89174 * 6 5 4 8 8 O 1.21618 * 120.00162 * 138.89049 * 7 6 5 9 9 N 1.34780 * 120.00070 * 319.16902 * 7 6 5 10 10 C 1.46504 * 119.99912 * 4.40520 * 9 7 6 11 11 C 1.46492 * 120.00227 * 184.41551 * 9 7 6 12 12 H 1.09001 * 109.47170 * 359.97438 * 11 9 7 13 13 C 1.52999 * 109.47171 * 239.99685 * 11 9 7 14 14 C 1.52998 * 109.47468 * 119.99283 * 11 9 7 15 15 N 1.46900 * 109.47245 * 305.00242 * 14 11 9 16 16 C 1.46900 * 111.00020 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.47215 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99875 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99660 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99780 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99907 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00301 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00072 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47603 * 89.99861 * 24 22 20 26 26 H 1.48501 * 109.47121 * 209.99818 * 24 22 20 27 27 H 1.48505 * 109.47068 * 329.99436 * 24 22 20 28 28 H 1.09000 * 109.47350 * 269.97487 * 1 2 3 29 29 H 1.08997 * 109.47234 * 29.97794 * 1 2 3 30 30 H 1.09004 * 109.47208 * 149.97832 * 1 2 3 31 31 H 1.08003 * 127.32025 * 180.24697 * 5 4 3 32 32 H 1.09000 * 109.46920 * 84.35145 * 10 9 7 33 33 H 1.08991 * 109.47459 * 204.35346 * 10 9 7 34 34 H 1.09000 * 109.46966 * 324.35919 * 10 9 7 35 35 H 1.09001 * 109.46660 * 299.99806 * 13 11 9 36 36 H 1.08997 * 109.47438 * 59.99828 * 13 11 9 37 37 H 1.09003 * 109.47251 * 179.97438 * 13 11 9 38 38 H 1.09000 * 109.47000 * 65.00204 * 14 11 9 39 39 H 1.09007 * 109.47580 * 184.99801 * 14 11 9 40 40 H 1.00893 * 110.99991 * 56.03955 * 15 14 11 41 41 H 1.09002 * 109.47392 * 299.99741 * 16 15 14 42 42 H 1.09007 * 109.47075 * 59.99893 * 16 15 14 43 43 H 0.97001 * 120.00049 * 359.97438 * 19 17 16 44 44 H 0.97003 * 120.00526 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7029 -0.0007 5 6 3.6017 -1.0020 0.0047 6 6 2.2351 -1.1868 -0.0006 7 6 1.6036 -2.5180 -0.0007 8 8 0.6230 -2.7259 0.6881 9 7 2.1158 -3.5069 -0.7598 10 6 3.3552 -3.2877 -1.5096 11 6 1.4332 -4.8008 -0.8353 12 1 0.5366 -4.7754 -0.2159 13 6 2.3692 -5.9014 -0.3319 14 6 1.0428 -5.0877 -2.2866 15 7 0.2423 -3.9718 -2.8081 16 6 -0.1509 -4.2127 -4.2029 17 6 -0.9693 -3.0499 -4.7021 18 8 -1.2024 -2.1129 -3.9680 19 7 -1.4429 -3.0516 -5.9639 20 6 -2.1879 -1.9939 -6.4178 21 1 -2.3954 -1.1597 -5.7642 22 6 -2.6758 -1.9954 -7.7188 23 7 -3.3902 -0.9819 -8.1538 24 14 -2.3173 -3.4388 -8.8491 25 1 -3.3909 -4.4554 -8.7097 26 1 -2.2640 -2.9649 -10.2554 27 1 -1.0120 -4.0437 -8.4808 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 4.3657 -1.7654 0.0099 32 1 4.2105 -3.4718 -0.8595 33 1 3.3912 -3.9693 -2.3593 34 1 3.3860 -2.2586 -1.8677 35 1 3.2659 -5.9270 -0.9510 36 1 2.6472 -5.6971 0.7021 37 1 1.8611 -6.8642 -0.3876 38 1 1.9438 -5.2014 -2.8895 39 1 0.4578 -6.0064 -2.3308 40 1 0.7385 -3.0979 -2.7184 41 1 0.7420 -4.3200 -4.8188 42 1 -0.7441 -5.1254 -4.2607 43 1 -1.2568 -3.8011 -6.5508 44 1 -3.7312 -0.9831 -9.0620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714589230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:23 Heat of formation + Delta-G solvation = -12.466433 kcal Electronic energy + Delta-G solvation = -27781.548989 eV Core-core repulsion = 23861.425578 eV Total energy + Delta-G solvation = -3920.123411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76808 -38.79286 -38.31323 -36.84873 -34.83118 -33.87913 -32.68471 -31.64844 -30.86041 -29.58876 -27.78898 -27.37717 -25.14320 -24.51904 -23.16218 -22.28542 -20.08038 -19.43438 -19.31022 -18.33782 -18.04466 -17.28602 -16.48397 -16.17094 -15.81298 -15.22480 -15.04168 -14.87486 -14.67571 -14.22311 -14.07912 -14.01513 -13.45343 -13.30918 -13.20667 -12.92374 -12.79794 -12.71415 -12.43434 -12.31920 -12.24111 -12.14119 -11.92448 -11.79493 -11.58220 -11.51703 -11.20455 -11.07440 -10.88038 -10.60308 -10.01698 -9.97431 -9.81078 -9.56990 -8.98825 -8.81522 -8.55067 -8.19187 -8.13726 -6.30586 -3.82027 0.25734 1.15684 1.55797 1.81946 2.63109 2.99163 3.01187 3.06330 3.14361 3.73984 4.00445 4.10232 4.23383 4.41014 4.72344 4.76285 4.77730 4.78723 4.98460 5.00334 5.12658 5.15597 5.21699 5.28036 5.33784 5.36361 5.41956 5.54014 5.60256 5.66061 5.75141 5.76540 5.80358 5.90577 5.96414 6.25230 6.35242 6.52581 7.05998 7.12828 7.53506 7.58676 8.00355 8.15050 8.60206 8.95598 9.42758 9.83146 10.82587 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003155 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.320998 B = 8872.917331 C =10310.564204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.169 3.831 3 N -0.463 5.463 4 S 0.274 5.726 5 C -0.182 4.182 6 C -0.201 4.201 7 C 0.592 3.408 8 O -0.514 6.514 9 N -0.604 5.604 10 C 0.069 3.931 11 C 0.139 3.861 12 H 0.114 0.886 13 C -0.158 4.158 14 C 0.049 3.951 15 N -0.663 5.663 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.561 6.561 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.191 0.809 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.085 0.915 40 H 0.349 0.651 41 H 0.042 0.958 42 H 0.088 0.912 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.336 -8.580 14.494 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.008 4.008 3 N -0.283 5.283 4 S 0.430 5.570 5 C -0.332 4.332 6 C -0.223 4.223 7 C 0.377 3.623 8 O -0.389 6.389 9 N -0.338 5.338 10 C -0.075 4.075 11 C 0.036 3.964 12 H 0.132 0.868 13 C -0.217 4.217 14 C -0.082 4.082 15 N -0.296 5.296 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.443 6.443 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.208 0.792 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.169 0.831 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.816 -6.082 15.437 25.087 hybrid contribution 0.480 -2.664 -1.760 3.228 sum 19.296 -8.746 13.677 25.217 Atomic orbital electron populations 1.20707 0.84999 1.05146 1.04067 1.21473 0.99686 0.86535 0.93116 1.76531 0.99850 1.25987 1.25968 1.84032 1.11445 0.95666 1.65836 1.27526 0.99173 1.04541 1.01927 1.20389 0.92359 0.96060 1.13464 1.17309 0.82937 0.82590 0.79450 1.90818 1.25636 1.81869 1.40626 1.47673 1.25592 1.13207 1.47313 1.22020 0.85902 1.03078 0.96474 1.21217 0.96709 0.81340 0.97156 0.86826 1.22099 0.99629 0.98372 1.01567 1.22364 0.95786 0.95812 0.94234 1.59988 1.46259 1.04812 1.18580 1.21720 0.98609 0.99072 0.89082 1.19701 0.85157 0.88901 0.82785 1.90574 1.61141 1.37010 1.55558 1.42201 1.48949 1.20393 1.11502 1.19432 1.26875 0.99086 0.97912 0.86283 1.25033 0.96925 0.97282 0.96909 1.69623 1.34687 1.29928 1.17899 0.86673 0.78690 0.82655 0.81339 1.19595 1.20216 1.19607 0.89398 0.90010 0.88633 0.79164 0.92436 0.90586 0.90718 0.92405 0.92003 0.91035 0.95299 0.89677 0.83107 0.94020 0.89394 0.79752 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.39 36.01 0.34 -0.92 16 2 C 0.17 2.37 6.74 -83.20 -0.56 1.81 16 3 N -0.46 -6.40 11.97 32.50 0.39 -6.01 16 4 S 0.27 2.68 23.69 -107.50 -2.55 0.13 16 5 C -0.18 -1.60 8.98 30.61 0.27 -1.33 16 6 C -0.20 -2.45 5.10 -105.95 -0.54 -3.00 16 7 C 0.59 7.85 6.86 -12.56 -0.09 7.77 16 8 O -0.51 -8.47 14.91 5.26 0.08 -8.40 16 9 N -0.60 -6.28 1.83 -175.24 -0.32 -6.60 16 10 C 0.07 0.49 8.02 59.85 0.48 0.97 16 11 C 0.14 1.41 2.94 -67.94 -0.20 1.21 16 12 H 0.11 1.45 6.91 -51.93 -0.36 1.10 16 13 C -0.16 -1.11 9.19 37.16 0.34 -0.76 16 14 C 0.05 0.52 5.00 -3.83 -0.02 0.50 16 15 N -0.66 -10.21 6.12 -115.05 -0.70 -10.92 16 16 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 17 C 0.45 10.20 7.82 -10.98 -0.09 10.11 16 18 O -0.56 -15.14 15.78 5.55 0.09 -15.05 16 19 N -0.59 -14.06 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.85 13.96 55.50 0.77 -25.08 16 24 Si 0.88 19.33 27.74 -169.99 -4.71 14.61 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.10 1.57 6.91 -51.93 -0.36 1.21 16 31 H 0.19 0.99 6.23 -52.48 -0.33 0.66 16 32 H 0.06 0.27 7.11 -51.93 -0.37 -0.10 16 33 H 0.08 0.49 6.54 -51.93 -0.34 0.15 16 34 H 0.07 0.58 6.04 -51.93 -0.31 0.27 16 35 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.26 6.87 -51.93 -0.36 -0.09 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.35 5.80 7.56 -39.30 -0.30 5.50 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 43 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -35.43 373.97 -7.58 -43.01 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.87 Total: 13.41 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -0.34 Total: 9.36 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.08 Total: -62.72 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.55 Total: 0.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.43 -7.58 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714589230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.547 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds