Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29951 * 125.30818 * 2 1 4 4 O 1.41872 * 107.41883 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.38855 * 359.77963 * 4 3 2 6 6 C 1.29951 * 107.41016 * 0.36949 * 5 4 3 7 7 C 1.50704 * 125.30421 * 179.89564 * 6 5 4 8 8 N 1.46897 * 109.47619 * 94.89338 * 7 6 5 9 9 C 1.48562 * 110.99933 * 284.44636 * 8 7 6 10 10 C 1.54379 * 104.59543 * 200.95814 * 9 8 7 11 11 C 1.54259 * 105.06009 * 23.85136 * 10 9 8 12 12 H 1.09001 * 110.32519 * 118.89619 * 11 10 9 13 13 N 1.46496 * 110.32475 * 241.00337 * 11 10 9 14 14 C 1.46507 * 120.00163 * 57.17054 * 13 11 10 15 15 C 1.34772 * 120.00407 * 237.17065 * 13 11 10 16 16 O 1.21283 * 119.99718 * 359.97438 * 15 13 11 17 17 C 1.50697 * 120.00691 * 179.97438 * 15 13 11 18 18 S 1.80994 * 109.47524 * 180.02562 * 17 15 13 19 19 C 1.76202 * 100.00253 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99931 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00156 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00163 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47081 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47398 * 119.99476 * 23 21 19 26 26 H 1.48504 * 109.47284 * 239.99684 * 23 21 19 27 27 C 1.48553 * 111.00096 * 169.02433 * 8 7 6 28 28 H 1.09004 * 109.47104 * 274.87025 * 1 2 3 29 29 H 1.08994 * 109.46804 * 34.87152 * 1 2 3 30 30 H 1.09004 * 109.47147 * 154.87435 * 1 2 3 31 31 H 1.09005 * 109.46708 * 334.89359 * 7 6 5 32 32 H 1.09000 * 109.46919 * 214.89567 * 7 6 5 33 33 H 1.08998 * 110.41193 * 82.17651 * 9 8 7 34 34 H 1.09002 * 110.40819 * 319.73727 * 9 8 7 35 35 H 1.09004 * 110.32082 * 264.95568 * 10 9 8 36 36 H 1.08994 * 110.32342 * 142.74645 * 10 9 8 37 37 H 1.08999 * 109.47080 * 89.99665 * 14 13 11 38 38 H 1.08992 * 109.47149 * 210.00322 * 14 13 11 39 39 H 1.08999 * 109.46665 * 330.00374 * 14 13 11 40 40 H 1.09007 * 109.47007 * 300.00370 * 17 15 13 41 41 H 1.08997 * 109.47100 * 59.99868 * 17 15 13 42 42 H 0.97000 * 119.99905 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.41412 * 40.26849 * 27 8 7 44 44 H 1.08997 * 110.41649 * 277.82025 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0006 7 6 1.8209 -2.5714 0.0014 8 7 1.5397 -2.9909 1.3808 9 6 2.7980 -3.2758 2.1175 10 6 2.3659 -4.1841 3.2887 11 6 1.0531 -4.8449 2.8202 12 1 1.1676 -5.9282 2.7808 13 7 -0.0472 -4.4828 3.7170 14 6 -0.3773 -3.0728 3.9393 15 6 -0.7558 -5.4466 4.3378 16 8 -0.4828 -6.6138 4.1535 17 6 -1.8873 -5.0741 5.2608 18 16 -2.6360 -6.5777 5.9349 19 6 -3.8902 -5.8672 6.9483 20 1 -3.9989 -4.7939 7.0003 21 6 -4.7379 -6.6868 7.6805 22 7 -4.6052 -7.9949 7.6176 23 14 -6.0680 -5.9336 8.7542 24 1 -6.0083 -4.4534 8.6510 25 1 -7.3994 -6.4086 8.2994 26 1 -5.8533 -6.3399 10.1664 27 6 0.8024 -4.2803 1.4053 28 1 -0.3633 0.0873 1.0240 29 1 -0.3633 0.8431 -0.5875 30 1 -0.3634 -0.9305 -0.4364 31 1 2.5803 -3.2241 -0.4293 32 1 0.9082 -2.6355 -0.5911 33 1 3.2353 -2.3514 2.4946 34 1 3.5059 -3.7972 1.4733 35 1 2.1912 -3.5887 4.1849 36 1 3.1247 -4.9429 3.4792 37 1 -1.1138 -2.7516 3.2027 38 1 -0.7879 -2.9493 4.9413 39 1 0.5242 -2.4684 3.8389 40 1 -1.5037 -4.4621 6.0772 41 1 -2.6380 -4.5110 4.7064 42 1 -5.1979 -8.5676 8.1290 43 1 1.1982 -4.9590 0.6497 44 1 -0.2627 -4.1123 1.2462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715007659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = 73.309191 kcal Electronic energy + Delta-G solvation = -26976.650565 eV Core-core repulsion = 23060.246665 eV Total energy + Delta-G solvation = -3916.403901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90819 -40.26074 -38.51972 -35.55829 -34.57639 -33.60601 -32.44740 -31.57852 -29.73578 -29.16862 -28.39412 -27.16169 -26.08305 -25.47080 -22.78188 -21.95730 -21.44467 -20.75910 -19.08373 -17.76634 -17.29381 -17.01972 -16.89541 -16.18719 -15.87922 -15.49079 -15.30714 -14.97800 -14.82298 -14.45578 -14.32408 -13.86115 -13.79000 -13.56523 -13.22020 -13.06050 -12.84089 -12.67814 -12.49398 -12.25011 -12.24460 -12.19295 -12.12226 -11.97233 -11.79525 -11.53423 -11.29950 -11.08761 -11.05304 -11.02100 -11.01455 -10.76633 -9.81310 -9.40347 -9.14416 -9.09185 -8.56087 -8.24292 -6.52226 -6.23693 -3.94231 0.10907 1.50611 2.23278 2.69121 2.89242 2.99557 3.20041 3.24720 3.29665 3.37193 3.51729 3.58547 4.08802 4.18383 4.21349 4.32727 4.48373 4.66065 4.80366 4.81857 4.87726 4.90805 4.97771 4.98565 5.05514 5.11662 5.15385 5.23266 5.29453 5.42042 5.44451 5.47057 5.52187 5.60486 5.75266 5.80197 5.83082 5.91971 6.12233 6.21775 6.27503 6.52802 6.65607 7.51910 7.58239 8.33557 8.51753 9.21933 10.83765 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002172 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.084062 B =12889.190592 C =13729.424680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.091 3.909 3 N -0.282 5.282 4 O 0.022 5.978 5 N -0.271 5.271 6 C 0.089 3.911 7 C 0.105 3.895 8 N -0.504 5.504 9 C 0.031 3.969 10 C -0.135 4.135 11 C 0.141 3.859 12 H 0.112 0.888 13 N -0.613 5.613 14 C 0.085 3.915 15 C 0.534 3.466 16 O -0.519 6.519 17 C -0.149 4.149 18 S -0.064 6.064 19 C -0.533 4.533 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.026 3.974 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.060 0.940 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.278 14.340 -16.890 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 N -0.028 5.028 4 O -0.118 6.118 5 N -0.015 5.015 6 C -0.094 4.094 7 C -0.024 4.024 8 N -0.229 5.229 9 C -0.097 4.097 10 C -0.174 4.174 11 C 0.036 3.964 12 H 0.130 0.870 13 N -0.349 5.349 14 C -0.058 4.058 15 C 0.322 3.678 16 O -0.393 6.393 17 C -0.299 4.299 18 S 0.163 5.837 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.103 4.103 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.503 13.717 -16.860 25.587 hybrid contribution -1.194 0.983 0.499 1.625 sum 12.309 14.700 -16.361 25.204 Atomic orbital electron populations 1.20565 0.83948 1.04937 1.05292 1.24580 1.00481 0.88630 0.95427 1.79965 0.88996 1.19655 1.14161 1.93400 1.20430 1.13327 1.84636 1.79923 1.17706 0.91568 1.12326 1.24391 0.89665 0.98883 0.96496 1.20852 1.01842 0.87095 0.92616 1.65382 1.17360 1.29362 1.10798 1.23225 0.91093 0.99729 0.95620 1.22748 0.97072 0.99030 0.98584 1.21651 0.85914 1.01099 0.87757 0.87044 1.47853 1.33498 1.06937 1.46594 1.21691 1.01373 0.81229 1.01489 1.20388 0.82424 0.85103 0.79855 1.90687 1.67808 1.18380 1.62413 1.23543 0.98458 1.07279 1.00623 1.85394 1.38858 1.02933 1.56499 1.22890 1.18712 0.95233 1.31326 0.90897 1.24994 0.97438 0.94724 0.96470 1.70027 1.37570 1.02788 1.39897 0.86122 0.80582 0.79155 0.79664 1.19605 1.20566 1.20581 1.23548 1.00330 0.89019 0.97372 0.88082 0.89410 0.88827 0.91100 0.87091 0.90142 0.92920 0.89914 0.90166 0.92762 0.91232 0.90764 0.89273 0.89234 0.92243 0.92154 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.27 36.00 0.37 0.02 16 2 C 0.09 0.68 7.19 -82.38 -0.59 0.09 16 3 N -0.28 -2.91 12.98 33.74 0.44 -2.48 16 4 O 0.02 0.27 13.71 12.03 0.16 0.43 16 5 N -0.27 -2.76 12.98 33.74 0.44 -2.33 16 6 C 0.09 0.68 6.39 -82.38 -0.53 0.15 16 7 C 0.11 0.56 5.11 -4.98 -0.03 0.53 16 8 N -0.50 -3.30 4.98 -231.41 -1.15 -4.46 16 9 C 0.03 0.23 6.15 -2.18 -0.01 0.21 16 10 C -0.14 -1.16 6.17 -25.35 -0.16 -1.32 16 11 C 0.14 1.45 3.46 -66.55 -0.23 1.22 16 12 H 0.11 1.38 6.96 -51.93 -0.36 1.02 16 13 N -0.61 -7.70 2.75 -172.35 -0.47 -8.18 16 14 C 0.09 0.83 9.28 59.85 0.56 1.39 16 15 C 0.53 9.47 7.69 -10.99 -0.08 9.39 16 16 O -0.52 -11.16 15.22 5.56 0.08 -11.08 16 17 C -0.15 -2.89 4.71 36.00 0.17 -2.72 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -14.89 9.50 30.94 0.29 -14.60 16 20 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 23 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.03 0.19 5.68 -2.18 -0.01 0.18 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.19 7.12 -51.93 -0.37 -0.18 16 31 H 0.07 0.36 7.74 -51.93 -0.40 -0.05 16 32 H 0.11 0.33 7.17 -51.93 -0.37 -0.04 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.36 7.74 -51.93 -0.40 -0.04 16 35 H 0.08 0.77 6.87 -51.93 -0.36 0.41 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.71 6.44 -51.93 -0.33 0.38 16 39 H 0.07 0.63 6.56 -51.93 -0.34 0.29 16 40 H 0.09 1.62 7.40 -51.91 -0.38 1.24 16 41 H 0.09 1.61 8.11 -51.92 -0.42 1.19 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 44 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -35.00 379.37 -7.87 -42.87 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.24 Total: -4.09 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -0.35 Total: -3.49 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.02 Total: -42.51 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.25 Total: -10.64 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.00 -7.87 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715007659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.177 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds