Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29951 * 125.30818 * 2 1 4 4 O 1.41872 * 107.41883 * 179.97438 * 3 2 1 5 5 N 1.41878 * 106.38855 * 359.77963 * 4 3 2 6 6 C 1.29951 * 107.41016 * 0.36949 * 5 4 3 7 7 C 1.50704 * 125.30421 * 179.89564 * 6 5 4 8 8 N 1.46897 * 109.47619 * 94.89338 * 7 6 5 9 9 C 1.48562 * 110.99933 * 284.44636 * 8 7 6 10 10 C 1.54379 * 104.59543 * 200.95814 * 9 8 7 11 11 C 1.54259 * 105.06009 * 23.85136 * 10 9 8 12 12 H 1.09001 * 110.32519 * 118.89619 * 11 10 9 13 13 N 1.46496 * 110.32475 * 241.00337 * 11 10 9 14 14 C 1.46507 * 120.00163 * 57.17054 * 13 11 10 15 15 C 1.34772 * 120.00407 * 237.17065 * 13 11 10 16 16 O 1.21283 * 119.99718 * 359.97438 * 15 13 11 17 17 C 1.50697 * 120.00691 * 179.97438 * 15 13 11 18 18 S 1.80994 * 109.47524 * 180.02562 * 17 15 13 19 19 C 1.76202 * 100.00253 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99931 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00156 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00163 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47081 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47398 * 119.99476 * 23 21 19 26 26 H 1.48504 * 109.47284 * 239.99684 * 23 21 19 27 27 C 1.48553 * 111.00096 * 169.02433 * 8 7 6 28 28 H 1.09004 * 109.47104 * 274.87025 * 1 2 3 29 29 H 1.08994 * 109.46804 * 34.87152 * 1 2 3 30 30 H 1.09004 * 109.47147 * 154.87435 * 1 2 3 31 31 H 1.09005 * 109.46708 * 334.89359 * 7 6 5 32 32 H 1.09000 * 109.46919 * 214.89567 * 7 6 5 33 33 H 1.08998 * 110.41193 * 82.17651 * 9 8 7 34 34 H 1.09002 * 110.40819 * 319.73727 * 9 8 7 35 35 H 1.09004 * 110.32082 * 264.95568 * 10 9 8 36 36 H 1.08994 * 110.32342 * 142.74645 * 10 9 8 37 37 H 1.08999 * 109.47080 * 89.99665 * 14 13 11 38 38 H 1.08992 * 109.47149 * 210.00322 * 14 13 11 39 39 H 1.08999 * 109.46665 * 330.00374 * 14 13 11 40 40 H 1.09007 * 109.47007 * 300.00370 * 17 15 13 41 41 H 1.08997 * 109.47100 * 59.99868 * 17 15 13 42 42 H 0.97000 * 119.99905 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.41412 * 40.26849 * 27 8 7 44 44 H 1.08997 * 110.41649 * 277.82025 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6247 0.0006 5 7 3.5710 -0.7936 0.0062 6 6 2.3213 -1.1499 0.0006 7 6 1.8209 -2.5714 0.0014 8 7 1.5397 -2.9909 1.3808 9 6 2.7980 -3.2758 2.1175 10 6 2.3659 -4.1841 3.2887 11 6 1.0531 -4.8449 2.8202 12 1 1.1676 -5.9282 2.7808 13 7 -0.0472 -4.4828 3.7170 14 6 -0.3773 -3.0728 3.9393 15 6 -0.7558 -5.4466 4.3378 16 8 -0.4828 -6.6138 4.1535 17 6 -1.8873 -5.0741 5.2608 18 16 -2.6360 -6.5777 5.9349 19 6 -3.8902 -5.8672 6.9483 20 1 -3.9989 -4.7939 7.0003 21 6 -4.7379 -6.6868 7.6805 22 7 -4.6052 -7.9949 7.6176 23 14 -6.0680 -5.9336 8.7542 24 1 -6.0083 -4.4534 8.6510 25 1 -7.3994 -6.4086 8.2994 26 1 -5.8533 -6.3399 10.1664 27 6 0.8024 -4.2803 1.4053 28 1 -0.3633 0.0873 1.0240 29 1 -0.3633 0.8431 -0.5875 30 1 -0.3634 -0.9305 -0.4364 31 1 2.5803 -3.2241 -0.4293 32 1 0.9082 -2.6355 -0.5911 33 1 3.2353 -2.3514 2.4946 34 1 3.5059 -3.7972 1.4733 35 1 2.1912 -3.5887 4.1849 36 1 3.1247 -4.9429 3.4792 37 1 -1.1138 -2.7516 3.2027 38 1 -0.7879 -2.9493 4.9413 39 1 0.5242 -2.4684 3.8389 40 1 -1.5037 -4.4621 6.0772 41 1 -2.6380 -4.5110 4.7064 42 1 -5.1979 -8.5676 8.1290 43 1 1.1982 -4.9590 0.6497 44 1 -0.2627 -4.1123 1.2462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715007659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = 47.827468 kcal Electronic energy + Delta-G solvation = -26977.755536 eV Core-core repulsion = 23060.246665 eV Total energy + Delta-G solvation = -3917.508871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.53135 -41.24499 -39.52199 -36.49845 -35.29495 -34.56174 -34.30986 -32.38626 -30.80240 -29.61417 -29.35469 -27.90428 -27.65758 -26.85037 -23.38562 -22.57276 -22.35427 -21.36017 -20.27151 -19.52260 -18.28845 -17.89275 -17.53934 -17.10118 -16.85879 -16.74730 -16.50111 -16.26431 -15.84312 -15.51860 -15.05240 -14.84175 -14.53052 -14.44241 -14.20024 -14.13210 -13.76240 -13.51545 -13.38277 -13.25124 -13.13588 -13.00818 -12.92145 -12.87631 -12.80653 -12.68268 -12.57676 -12.49995 -12.19778 -11.98232 -11.78907 -11.66219 -11.60956 -11.13778 -10.81031 -10.22581 -9.73429 -9.56969 -8.63920 -8.32661 -6.10046 -0.52937 0.95138 1.29131 1.42901 1.48854 1.53944 1.59571 1.62399 2.09907 2.16138 2.29987 2.79425 2.98261 3.01709 3.29887 3.49766 3.59276 3.75346 3.86911 3.94884 4.13791 4.21568 4.26792 4.27815 4.36689 4.41567 4.46028 4.53543 4.55829 4.66994 4.72826 4.75799 4.79148 4.79751 4.84592 5.02381 5.07774 5.14761 5.20538 5.44551 5.55273 5.72095 5.73610 5.90280 6.22320 6.35601 7.09121 7.20569 8.76672 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020920 B = 0.002172 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.084062 B =12889.190592 C =13729.424680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.105 3.895 3 N -0.313 5.313 4 O -0.021 6.021 5 N -0.295 5.295 6 C 0.103 3.897 7 C 0.106 3.894 8 N -0.501 5.501 9 C 0.039 3.961 10 C -0.129 4.129 11 C 0.132 3.868 12 H 0.087 0.913 13 N -0.596 5.596 14 C 0.080 3.920 15 C 0.533 3.467 16 O -0.567 6.567 17 C -0.122 4.122 18 S -0.154 6.154 19 C -0.542 4.542 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.276 1.276 27 C 0.038 3.962 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.270 0.730 43 H 0.077 0.923 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 16.254 -17.815 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 N -0.062 5.062 4 O -0.154 6.154 5 N -0.042 5.042 6 C -0.081 4.081 7 C -0.023 4.023 8 N -0.226 5.226 9 C -0.089 4.089 10 C -0.168 4.168 11 C 0.028 3.972 12 H 0.105 0.895 13 N -0.329 5.329 14 C -0.062 4.062 15 C 0.321 3.679 16 O -0.446 6.446 17 C -0.273 4.273 18 S 0.073 5.927 19 C -0.690 4.690 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.201 1.201 27 C -0.090 4.090 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.394 15.713 -17.813 26.792 hybrid contribution -0.776 0.415 0.710 1.131 sum 11.618 16.128 -17.103 26.222 Atomic orbital electron populations 1.20829 0.81045 1.06759 1.06198 1.25225 1.01969 0.87792 0.92832 1.79947 0.88731 1.21055 1.16462 1.93375 1.21732 1.14260 1.86023 1.79894 1.19334 0.91011 1.13912 1.24829 0.88957 0.99965 0.94397 1.21080 1.03673 0.85448 0.92144 1.65334 1.16799 1.28824 1.11655 1.23126 0.91578 0.98985 0.95241 1.22673 0.96154 0.99083 0.98928 1.21829 0.85813 1.00233 0.89329 0.89473 1.47806 1.32642 1.07200 1.45285 1.21931 1.02855 0.79301 1.02071 1.20101 0.82525 0.85235 0.80055 1.90674 1.69215 1.20434 1.64227 1.23365 0.99237 1.03297 1.01416 1.85570 1.40216 1.09241 1.57666 1.23213 1.18750 0.95684 1.31319 0.89941 1.26112 1.00053 0.95115 0.97931 1.70189 1.38927 1.04542 1.41161 0.84924 0.76982 0.78894 0.77266 1.17940 1.19936 1.20149 1.23417 1.00871 0.89405 0.95336 0.87155 0.88666 0.86143 0.90262 0.83710 0.90906 0.92192 0.90516 0.90102 0.90507 0.91551 0.89103 0.87825 0.87305 0.92064 0.90454 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.27 71.24 0.73 0.38 16 2 C 0.10 1.32 7.19 43.49 0.31 1.63 16 3 N -0.31 -6.27 12.98 -47.16 -0.61 -6.88 16 4 O -0.02 -0.51 13.71 70.17 0.96 0.45 16 5 N -0.29 -5.76 12.98 -47.15 -0.61 -6.37 16 6 C 0.10 1.31 6.39 43.49 0.28 1.59 16 7 C 0.11 0.69 5.11 85.56 0.44 1.13 16 8 N -0.50 -4.72 4.98 -886.04 -4.41 -9.13 16 9 C 0.04 0.47 6.15 86.45 0.53 1.00 16 10 C -0.13 -2.00 6.17 31.49 0.19 -1.81 16 11 C 0.13 2.49 3.46 45.89 0.16 2.65 16 12 H 0.09 2.14 6.96 -2.39 -0.02 2.12 16 13 N -0.60 -13.83 2.75 -817.59 -2.24 -16.07 16 14 C 0.08 1.30 9.28 127.77 1.19 2.48 16 15 C 0.53 18.63 7.69 87.66 0.67 19.30 16 16 O -0.57 -24.98 15.22 -3.04 -0.05 -25.03 16 17 C -0.12 -4.65 4.71 71.23 0.34 -4.31 16 18 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 19 C -0.54 -30.28 9.50 67.95 0.65 -29.64 16 20 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 23 Si 1.00 42.83 29.55 68.60 2.03 44.85 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.04 0.42 5.68 86.45 0.49 0.91 16 28 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 29 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.12 -0.16 7.12 -2.38 -0.02 -0.18 16 31 H 0.08 0.48 7.74 -2.38 -0.02 0.46 16 32 H 0.15 0.04 7.17 -2.39 -0.02 0.02 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.67 7.74 -2.39 -0.02 0.65 16 35 H 0.08 1.30 6.87 -2.39 -0.02 1.28 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.15 6.44 -2.39 -0.02 1.14 16 39 H 0.09 1.22 6.56 -2.39 -0.02 1.21 16 40 H 0.10 3.63 7.40 -2.39 -0.02 3.61 16 41 H 0.11 3.70 8.11 -2.40 -0.02 3.68 16 42 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 43 H 0.08 0.67 8.00 -2.39 -0.02 0.66 16 44 H 0.10 1.12 8.06 -2.39 -0.02 1.10 16 Total: -1.00 -80.71 379.37 1.65 -79.07 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 1.02 Total: 7.15 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.44 Total: -3.51 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -7.60 Total: -93.46 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: 0.92 Total: -24.57 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -80.71 1.65 -79.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715007659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.897 kcal (2) G-P(sol) polarization free energy of solvation -80.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds