Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38392 * 120.00035 * 2 1 4 4 N 1.32124 * 119.99580 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00409 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00190 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46722 * 275.00272 * 6 5 4 8 8 C 1.46900 * 110.99888 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47407 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47269 * 305.00036 * 9 8 7 11 11 O 1.42903 * 109.46459 * 64.99929 * 9 8 7 12 12 C 1.53001 * 109.47376 * 184.99739 * 9 8 7 13 13 N 1.46497 * 109.46900 * 180.02562 * 12 9 8 14 14 C 1.34783 * 119.99638 * 180.02562 * 13 12 9 15 15 O 1.21276 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99567 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46548 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99641 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99639 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00457 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99706 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46901 * 60.00207 * 22 20 18 24 24 H 1.48504 * 109.46851 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46944 * 300.00164 * 22 20 18 26 26 C 1.38350 * 119.99446 * 0.26275 * 5 4 3 27 27 N 1.32118 * 120.00135 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46914 * 90.00517 * 1 2 3 29 29 H 1.09000 * 109.47638 * 210.00590 * 1 2 3 30 30 H 1.09004 * 109.47383 * 330.00868 * 1 2 3 31 31 H 1.08000 * 120.00279 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47000 * 155.00308 * 6 5 4 33 33 H 1.08992 * 109.47389 * 34.99815 * 6 5 4 34 34 H 1.00897 * 111.00315 * 56.04381 * 7 6 5 35 35 H 1.09005 * 109.47208 * 59.99899 * 8 7 6 36 36 H 1.08999 * 109.46786 * 299.99678 * 8 7 6 37 37 H 0.96700 * 114.00311 * 60.00313 * 11 9 8 38 38 H 1.08999 * 109.47164 * 300.00361 * 12 9 8 39 39 H 1.08997 * 109.47124 * 60.00063 * 12 9 8 40 40 H 0.96996 * 120.00310 * 359.97438 * 13 12 9 41 41 H 1.08998 * 109.47167 * 299.99565 * 16 14 13 42 42 H 1.09001 * 109.47098 * 60.00477 * 16 14 13 43 43 H 0.96996 * 120.00031 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.99441 * 179.72233 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1810 0.0539 0.0015 6 6 5.6879 0.0538 0.0015 7 7 6.1775 0.1734 -1.3783 8 6 7.6460 0.1761 -1.4175 9 6 8.1173 0.3011 -2.8677 10 1 7.6681 -0.4920 -3.4655 11 8 7.7228 1.5719 -3.3888 12 6 9.6415 0.1789 -2.9210 13 7 10.0928 0.2992 -4.3096 14 6 11.4065 0.2212 -4.6003 15 8 12.2151 0.0519 -3.7124 16 6 11.8707 0.3444 -6.0288 17 16 13.6738 0.1999 -6.0917 18 6 13.9343 0.3742 -7.8257 19 1 13.0924 0.5200 -8.4863 20 6 15.2216 0.3249 -8.3424 21 7 16.2477 0.1476 -7.5373 22 14 15.4978 0.5103 -10.1806 23 1 14.9817 1.8288 -10.6282 24 1 16.9509 0.4225 -10.4741 25 1 14.7805 -0.5724 -10.9006 26 6 3.4891 -1.1442 -0.0034 27 7 2.1676 -1.1442 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6590 2.1338 -0.0004 32 1 6.0512 -0.8771 0.4366 33 1 6.0513 0.8961 0.5901 34 1 5.8020 0.9963 -1.8253 35 1 8.0225 -0.7543 -0.9924 36 1 8.0233 1.0190 -0.8386 37 1 8.0866 2.3257 -2.9046 38 1 10.0907 0.9720 -2.3233 39 1 9.9424 -0.7904 -2.5235 40 1 9.4460 0.4342 -5.0198 41 1 11.4212 -0.4486 -6.6265 42 1 11.5701 1.3139 -6.4262 43 1 17.1473 0.1136 -7.8984 44 1 4.0291 -2.0795 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716079628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -46.900698 kcal Electronic energy + Delta-G solvation = -24958.309641 eV Core-core repulsion = 21036.693049 eV Total energy + Delta-G solvation = -3921.616592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64286 -39.48822 -38.26551 -36.36527 -34.70588 -34.11913 -33.36342 -32.41939 -31.02167 -29.69492 -28.30731 -25.87589 -25.42406 -25.17928 -23.89829 -22.33792 -21.98982 -20.29452 -18.31606 -17.93342 -17.51111 -16.85709 -16.61863 -16.35211 -16.15225 -15.92492 -15.44845 -15.25429 -14.83339 -14.78953 -14.64423 -14.25252 -13.88305 -13.60087 -13.38187 -13.17147 -13.06361 -13.02001 -12.84717 -12.56753 -12.50351 -12.34954 -12.02644 -11.74206 -11.58260 -11.32191 -11.03724 -11.02824 -10.77762 -10.51744 -9.81477 -9.62499 -9.57679 -9.41201 -9.05671 -8.98685 -8.90560 -8.23615 -6.49342 -6.20713 -3.91419 0.23501 0.64105 2.93128 3.08903 3.10062 3.24586 3.27931 3.30841 3.42749 3.60047 3.67446 3.89069 3.96864 4.07251 4.17886 4.21587 4.46069 4.55396 4.57374 4.64506 4.69831 4.88101 4.98387 5.03177 5.07944 5.12928 5.14506 5.18200 5.19128 5.21161 5.40031 5.52317 5.70503 5.79024 5.86861 5.91141 6.16081 6.32365 6.58467 6.75393 6.84694 7.24815 7.29357 7.60351 7.71484 8.36093 8.60437 9.24565 10.86695 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.001371 C = 0.001346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.099395 B =20416.949620 C =20802.837143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.077 3.923 3 C 0.052 3.948 4 N -0.431 5.431 5 C 0.073 3.927 6 C 0.113 3.887 7 N -0.679 5.679 8 C 0.031 3.969 9 C 0.098 3.902 10 H 0.115 0.885 11 O -0.557 6.557 12 C 0.092 3.908 13 N -0.733 5.733 14 C 0.532 3.468 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.078 3.922 27 N -0.441 5.441 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.353 0.647 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.376 0.624 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.403 0.597 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.067 1.129 17.257 35.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.064 4.064 3 C -0.108 4.108 4 N -0.146 5.146 5 C -0.067 4.067 6 C -0.017 4.017 7 N -0.312 5.312 8 C -0.099 4.099 9 C 0.038 3.962 10 H 0.133 0.867 11 O -0.362 6.362 12 C -0.034 4.034 13 N -0.388 5.388 14 C 0.318 3.682 15 O -0.395 6.395 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.082 4.082 27 N -0.156 5.156 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.186 0.814 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.173 0.827 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.223 0.777 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.865 -0.219 18.225 34.987 hybrid contribution -0.534 1.564 -1.748 2.406 sum -30.399 1.346 16.477 34.603 Atomic orbital electron populations 1.20707 0.87610 1.04010 1.03673 1.22378 0.98627 0.89729 0.95620 1.23601 0.90472 0.99301 0.97474 1.68231 1.08886 1.29513 1.08003 1.22082 0.97619 0.89786 0.97254 1.20729 0.87288 1.02790 0.90919 1.60415 1.07614 1.47676 1.15511 1.22594 0.87905 1.02464 0.96966 1.22229 0.92577 0.87195 0.94172 0.86687 1.86622 1.75124 1.15094 1.59340 1.21878 0.93733 1.03036 0.84752 1.45853 1.08007 1.76440 1.08501 1.20332 0.81452 0.75339 0.91079 1.90697 1.53061 1.47066 1.48640 1.23527 1.07012 1.04980 0.94848 1.85370 0.92540 1.95040 1.10467 1.22838 0.95558 1.57773 0.92283 0.90951 1.24984 0.94932 0.94532 0.99054 1.70008 0.99010 1.46222 1.35116 0.86226 0.77328 0.78858 0.83106 1.19937 1.20805 1.19923 1.23615 0.90284 0.99397 0.94920 1.68345 1.08787 1.29349 1.09140 0.89799 0.90084 0.90131 0.81376 0.88751 0.92829 0.82720 0.89252 0.94077 0.77682 0.91414 0.90581 0.76238 0.89177 0.89168 0.92135 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 10.19 36.01 0.37 0.01 16 2 C 0.08 0.52 6.79 -82.41 -0.56 -0.04 16 3 C 0.05 0.34 10.88 -17.37 -0.19 0.16 16 4 N -0.43 -3.60 10.42 -9.29 -0.10 -3.70 16 5 C 0.07 0.55 6.30 -82.41 -0.52 0.03 16 6 C 0.11 0.68 6.01 -4.98 -0.03 0.65 16 7 N -0.68 -4.62 6.49 -115.06 -0.75 -5.37 16 8 C 0.03 0.19 5.36 -3.82 -0.02 0.17 16 9 C 0.10 0.74 3.29 -26.73 -0.09 0.65 16 10 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 11 O -0.56 -4.52 12.60 -35.23 -0.44 -4.97 16 12 C 0.09 0.95 5.34 -4.04 -0.02 0.92 16 13 N -0.73 -9.61 5.45 -60.30 -0.33 -9.94 16 14 C 0.53 9.87 7.85 -10.98 -0.09 9.79 16 15 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.08 0.58 10.86 -17.37 -0.19 0.39 16 27 N -0.44 -3.74 10.42 -9.29 -0.10 -3.83 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.12 8.09 -51.93 -0.42 -0.30 16 31 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.09 0.42 8.05 -51.93 -0.42 0.00 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.35 2.77 8.28 -39.29 -0.33 2.44 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.38 2.12 9.05 45.56 0.41 2.53 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.50 8.35 -40.82 -0.34 4.16 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 42 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -37.06 395.40 -8.79 -45.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.71 Total: 3.75 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -0.92 Total: -3.20 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.53 Total: -48.35 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.36 Total: -16.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.06 -8.79 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716079628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.052 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds