Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38392 * 120.00035 * 2 1 4 4 N 1.32124 * 119.99580 * 179.97438 * 3 2 1 5 5 C 1.32155 * 120.00409 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00190 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46722 * 275.00272 * 6 5 4 8 8 C 1.46900 * 110.99888 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47407 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47269 * 305.00036 * 9 8 7 11 11 O 1.42903 * 109.46459 * 64.99929 * 9 8 7 12 12 C 1.53001 * 109.47376 * 184.99739 * 9 8 7 13 13 N 1.46497 * 109.46900 * 180.02562 * 12 9 8 14 14 C 1.34783 * 119.99638 * 180.02562 * 13 12 9 15 15 O 1.21276 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99567 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46548 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99641 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99639 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00457 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99706 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46901 * 60.00207 * 22 20 18 24 24 H 1.48504 * 109.46851 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46944 * 300.00164 * 22 20 18 26 26 C 1.38350 * 119.99446 * 0.26275 * 5 4 3 27 27 N 1.32118 * 120.00135 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46914 * 90.00517 * 1 2 3 29 29 H 1.09000 * 109.47638 * 210.00590 * 1 2 3 30 30 H 1.09004 * 109.47383 * 330.00868 * 1 2 3 31 31 H 1.08000 * 120.00279 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.47000 * 155.00308 * 6 5 4 33 33 H 1.08992 * 109.47389 * 34.99815 * 6 5 4 34 34 H 1.00897 * 111.00315 * 56.04381 * 7 6 5 35 35 H 1.09005 * 109.47208 * 59.99899 * 8 7 6 36 36 H 1.08999 * 109.46786 * 299.99678 * 8 7 6 37 37 H 0.96700 * 114.00311 * 60.00313 * 11 9 8 38 38 H 1.08999 * 109.47164 * 300.00361 * 12 9 8 39 39 H 1.08997 * 109.47124 * 60.00063 * 12 9 8 40 40 H 0.96996 * 120.00310 * 359.97438 * 13 12 9 41 41 H 1.08998 * 109.47167 * 299.99565 * 16 14 13 42 42 H 1.09001 * 109.47098 * 60.00477 * 16 14 13 43 43 H 0.96996 * 120.00031 * 180.02562 * 21 20 18 44 44 H 1.08001 * 119.99441 * 179.72233 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1810 0.0539 0.0015 6 6 5.6879 0.0538 0.0015 7 7 6.1775 0.1734 -1.3783 8 6 7.6460 0.1761 -1.4175 9 6 8.1173 0.3011 -2.8677 10 1 7.6681 -0.4920 -3.4655 11 8 7.7228 1.5719 -3.3888 12 6 9.6415 0.1789 -2.9210 13 7 10.0928 0.2992 -4.3096 14 6 11.4065 0.2212 -4.6003 15 8 12.2151 0.0519 -3.7124 16 6 11.8707 0.3444 -6.0288 17 16 13.6738 0.1999 -6.0917 18 6 13.9343 0.3742 -7.8257 19 1 13.0924 0.5200 -8.4863 20 6 15.2216 0.3249 -8.3424 21 7 16.2477 0.1476 -7.5373 22 14 15.4978 0.5103 -10.1806 23 1 14.9817 1.8288 -10.6282 24 1 16.9509 0.4225 -10.4741 25 1 14.7805 -0.5724 -10.9006 26 6 3.4891 -1.1442 -0.0034 27 7 2.1676 -1.1442 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8901 0.5137 31 1 1.6590 2.1338 -0.0004 32 1 6.0512 -0.8771 0.4366 33 1 6.0513 0.8961 0.5901 34 1 5.8020 0.9963 -1.8253 35 1 8.0225 -0.7543 -0.9924 36 1 8.0233 1.0190 -0.8386 37 1 8.0866 2.3257 -2.9046 38 1 10.0907 0.9720 -2.3233 39 1 9.9424 -0.7904 -2.5235 40 1 9.4460 0.4342 -5.0198 41 1 11.4212 -0.4486 -6.6265 42 1 11.5701 1.3139 -6.4262 43 1 17.1473 0.1136 -7.8984 44 1 4.0291 -2.0795 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716079628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = -79.233580 kcal Electronic energy + Delta-G solvation = -24959.711700 eV Core-core repulsion = 21036.693049 eV Total energy + Delta-G solvation = -3923.018651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.13234 -40.72764 -39.12122 -36.93194 -35.34702 -35.16394 -34.58046 -33.82432 -31.95136 -30.69458 -29.14208 -27.67352 -26.41841 -25.68636 -24.54134 -22.85451 -22.62775 -21.66389 -19.85426 -18.82333 -18.21032 -17.92876 -17.43830 -17.29171 -16.87604 -16.81042 -16.42932 -16.42013 -16.31272 -15.72572 -15.61946 -15.28845 -14.84468 -14.59376 -14.38186 -14.18433 -13.94472 -13.76250 -13.51144 -13.28489 -13.17354 -13.16780 -12.97588 -12.86903 -12.82455 -12.62693 -12.55990 -12.12034 -11.97132 -11.75732 -11.25668 -11.12680 -10.89800 -10.28580 -10.13617 -10.09715 -10.06279 -9.46942 -8.66484 -8.34329 -6.12573 -0.24788 0.11937 1.27001 1.44287 1.46844 1.56868 1.60868 2.21699 2.28486 2.58678 2.98481 2.99788 3.19893 3.27285 3.33501 3.47262 3.49752 3.75959 3.87296 3.90380 4.05599 4.08890 4.13622 4.16516 4.29631 4.44851 4.50880 4.51737 4.62850 4.65617 4.71044 4.75632 4.77939 4.84978 5.08131 5.11600 5.40245 5.41945 5.44768 5.85852 6.19878 6.22545 6.32896 6.48637 6.74187 6.79733 7.06940 7.23510 8.74675 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034727 B = 0.001371 C = 0.001346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.099395 B =20416.949620 C =20802.837143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.069 3.931 3 C 0.046 3.954 4 N -0.454 5.454 5 C 0.063 3.937 6 C 0.117 3.883 7 N -0.683 5.683 8 C 0.036 3.964 9 C 0.115 3.885 10 H 0.113 0.887 11 O -0.567 6.567 12 C 0.090 3.910 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.131 4.131 17 S -0.149 6.149 18 C -0.549 4.549 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.068 3.932 27 N -0.468 5.468 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.196 0.804 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.347 0.653 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.387 0.613 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.292 1.623 16.498 37.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.071 4.071 3 C -0.115 4.115 4 N -0.169 5.169 5 C -0.077 4.077 6 C -0.013 4.013 7 N -0.315 5.315 8 C -0.094 4.094 9 C 0.055 3.945 10 H 0.131 0.869 11 O -0.374 6.374 12 C -0.035 4.035 13 N -0.362 5.362 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.282 4.282 17 S 0.078 5.922 18 C -0.697 4.697 19 H 0.100 0.900 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.092 4.092 27 N -0.184 5.184 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.212 0.788 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.236 0.764 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -32.149 0.281 17.475 36.592 hybrid contribution -0.007 1.436 -1.428 2.025 sum -32.156 1.716 16.047 35.978 Atomic orbital electron populations 1.20803 0.85529 1.04998 1.04404 1.22888 1.00072 0.89405 0.94751 1.24076 0.90177 1.00440 0.96763 1.68246 1.09847 1.30082 1.08726 1.22274 0.98261 0.89709 0.97443 1.20758 0.86524 1.03550 0.90452 1.60412 1.07797 1.47317 1.16001 1.22529 0.87646 1.03328 0.95868 1.22030 0.90173 0.87113 0.95181 0.86942 1.86602 1.75239 1.15621 1.59932 1.22086 0.95698 1.02992 0.82682 1.45621 1.06171 1.74004 1.10382 1.20025 0.82850 0.75420 0.89754 1.90687 1.54654 1.49687 1.49415 1.23379 1.01324 1.06608 0.96906 1.85521 0.99864 1.95430 1.11388 1.23188 0.96312 1.57802 0.92418 0.89991 1.26107 0.94475 0.93750 1.04617 1.70172 0.99579 1.47335 1.37649 0.85018 0.77459 0.79445 0.76165 1.18702 1.20307 1.18685 1.23907 0.90292 1.00136 0.94829 1.68374 1.09415 1.30442 1.10135 0.89036 0.90478 0.87763 0.78768 0.87131 0.92992 0.83465 0.88392 0.93226 0.76361 0.91420 0.90744 0.74703 0.87349 0.87393 0.91961 0.79656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 71.24 0.73 0.17 16 2 C 0.07 0.87 6.79 42.55 0.29 1.16 16 3 C 0.05 0.55 10.88 84.69 0.92 1.48 16 4 N -0.45 -7.21 10.42 -183.29 -1.91 -9.12 16 5 C 0.06 0.90 6.30 42.54 0.27 1.17 16 6 C 0.12 1.25 6.01 85.56 0.51 1.77 16 7 N -0.68 -8.22 6.49 -517.94 -3.36 -11.58 16 8 C 0.04 0.37 5.36 86.30 0.46 0.83 16 9 C 0.11 1.51 3.29 30.60 0.10 1.61 16 10 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 11 O -0.57 -7.99 12.60 -148.98 -1.88 -9.87 16 12 C 0.09 1.71 5.34 86.38 0.46 2.17 16 13 N -0.71 -17.31 5.45 -463.06 -2.52 -19.84 16 14 C 0.53 19.45 7.85 87.66 0.69 20.13 16 15 O -0.57 -25.75 15.86 -3.02 -0.05 -25.79 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 18 C -0.55 -31.56 9.50 67.95 0.65 -30.91 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.02 0.88 5.49 84.86 0.47 1.34 16 21 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 22 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 C 0.07 0.97 10.86 84.67 0.92 1.89 16 27 N -0.47 -7.70 10.42 -183.29 -1.91 -9.61 16 28 H 0.09 0.38 8.14 -2.38 -0.02 0.37 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.06 8.09 -2.39 -0.02 0.04 16 31 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.11 0.79 8.05 -2.39 -0.02 0.77 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.35 4.97 8.28 -89.70 -0.74 4.23 16 35 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.39 3.54 9.05 -74.06 -0.67 2.87 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 8.23 8.35 -92.71 -0.77 7.46 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 43 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -82.03 395.40 -4.72 -86.74 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -1.14 Total: 20.58 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 6.90 Total: -1.97 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -9.42 Total: -105.92 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.93 Total: -35.66 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -82.03 -4.72 -86.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716079628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.510 kcal (2) G-P(sol) polarization free energy of solvation -82.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds