Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38393 * 120.00336 * 2 1 4 4 N 1.32120 * 119.99840 * 179.97438 * 3 2 1 5 5 C 1.32153 * 120.00151 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99976 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47217 * 275.00349 * 6 5 4 8 8 C 1.46898 * 110.99589 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46893 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47164 * 60.00204 * 9 8 7 11 11 O 1.42903 * 109.47171 * 299.99938 * 9 8 7 12 12 C 1.53003 * 109.47376 * 180.02562 * 9 8 7 13 13 N 1.46494 * 109.47283 * 185.00021 * 12 9 8 14 14 C 1.34779 * 119.99921 * 179.97438 * 13 12 9 15 15 O 1.21281 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99840 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.46956 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00083 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00072 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47069 * 90.00667 * 22 20 18 24 24 H 1.48502 * 109.47299 * 210.00539 * 22 20 18 25 25 H 1.48501 * 109.47224 * 330.00519 * 22 20 18 26 26 C 1.38344 * 120.00278 * 0.26505 * 5 4 3 27 27 N 1.32124 * 120.00193 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47074 * 90.00380 * 1 2 3 29 29 H 1.09001 * 109.47464 * 210.00761 * 1 2 3 30 30 H 1.09004 * 109.47221 * 330.00395 * 1 2 3 31 31 H 1.08000 * 119.99995 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47162 * 155.00209 * 6 5 4 33 33 H 1.09003 * 109.46881 * 35.00494 * 6 5 4 34 34 H 1.00904 * 110.99777 * 56.04865 * 7 6 5 35 35 H 1.08999 * 109.47049 * 60.00398 * 8 7 6 36 36 H 1.08997 * 109.47646 * 300.00448 * 8 7 6 37 37 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 38 38 H 1.09005 * 109.46682 * 304.99749 * 12 9 8 39 39 H 1.08999 * 109.47221 * 64.99915 * 12 9 8 40 40 H 0.96999 * 120.00388 * 359.97438 * 13 12 9 41 41 H 1.08992 * 109.47506 * 300.00283 * 16 14 13 42 42 H 1.08999 * 109.46876 * 60.00368 * 16 14 13 43 43 H 0.97000 * 120.00215 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00170 * 179.72029 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0538 0.0015 6 6 5.6879 0.0538 0.0015 7 7 6.1776 0.1733 -1.3783 8 6 7.6461 0.1772 -1.4171 9 6 8.1175 0.3034 -2.8672 10 1 7.7403 1.2336 -3.2922 11 8 7.6238 -0.8019 -3.6266 12 6 9.6470 0.3069 -2.9079 13 7 10.0985 0.5472 -4.2806 14 6 11.4166 0.5934 -4.5582 15 8 12.2289 0.4364 -3.6714 16 6 11.8810 0.8400 -5.9705 17 16 13.6903 0.8442 -6.0185 18 6 13.9502 1.1456 -7.7350 19 1 13.1048 1.2635 -8.3966 20 6 15.2414 1.2313 -8.2368 21 7 16.2719 1.0871 -7.4306 22 14 15.5169 1.5501 -10.0567 23 1 15.5924 3.0136 -10.2970 24 1 16.7879 0.9120 -10.4842 25 1 14.3894 0.9781 -10.8356 26 6 3.4891 -1.1442 -0.0035 27 7 2.1676 -1.1442 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6590 2.1338 -0.0004 32 1 6.0512 -0.8773 0.4366 33 1 6.0513 0.8961 0.5903 34 1 5.8022 0.9964 -1.8252 35 1 8.0232 -0.7528 -0.9918 36 1 8.0227 1.0205 -0.8383 37 1 7.9200 -1.6642 -3.3043 38 1 10.0259 1.0953 -2.2575 39 1 10.0217 -0.6578 -2.5658 40 1 9.4488 0.6732 -4.9899 41 1 11.5025 0.0513 -6.6205 42 1 11.5059 1.8044 -6.3130 43 1 17.1743 1.1474 -7.7812 44 1 4.0291 -2.0795 -0.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716079629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -45.103455 kcal Electronic energy + Delta-G solvation = -24954.327460 eV Core-core repulsion = 21032.788802 eV Total energy + Delta-G solvation = -3921.538658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64016 -39.45522 -38.19805 -36.36308 -34.70815 -34.09891 -33.36566 -32.42246 -30.98404 -29.69437 -28.28040 -25.87339 -25.42508 -25.17853 -23.90407 -22.37207 -21.98632 -20.29893 -18.31022 -17.92567 -17.50014 -16.77222 -16.60538 -16.36255 -16.12472 -15.82892 -15.36621 -15.31041 -14.81313 -14.79108 -14.74014 -14.28002 -13.88616 -13.51862 -13.37870 -13.21269 -13.07829 -12.93797 -12.85930 -12.57385 -12.48788 -12.34540 -12.02731 -11.73652 -11.57933 -11.31377 -11.05695 -11.01725 -10.76874 -10.39790 -9.80803 -9.62226 -9.57323 -9.40845 -9.06654 -8.96531 -8.89515 -8.23431 -6.49581 -6.21173 -3.91726 0.23845 0.64267 2.93056 3.08635 3.10057 3.23077 3.28061 3.31863 3.42869 3.60033 3.67617 3.87806 3.96074 4.15736 4.20912 4.21317 4.41267 4.51896 4.58223 4.64375 4.74329 4.88711 4.98549 5.03062 5.07751 5.10226 5.14126 5.17393 5.18638 5.21605 5.40185 5.51687 5.68893 5.78281 5.87012 5.90797 6.15814 6.31543 6.58340 6.72909 6.82444 7.29542 7.40364 7.60374 7.70656 8.35979 8.60032 9.24297 10.86304 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035032 B = 0.001371 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.074666 B =20424.023423 C =20818.711293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.077 3.923 3 C 0.052 3.948 4 N -0.432 5.432 5 C 0.074 3.926 6 C 0.113 3.887 7 N -0.673 5.673 8 C 0.029 3.971 9 C 0.101 3.899 10 H 0.103 0.897 11 O -0.545 6.545 12 C 0.091 3.909 13 N -0.733 5.733 14 C 0.532 3.468 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.079 3.921 27 N -0.441 5.441 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.377 0.623 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.157 -1.921 16.928 35.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.064 4.064 3 C -0.109 4.109 4 N -0.147 5.147 5 C -0.067 4.067 6 C -0.017 4.017 7 N -0.305 5.305 8 C -0.101 4.101 9 C 0.041 3.959 10 H 0.121 0.879 11 O -0.350 6.350 12 C -0.034 4.034 13 N -0.388 5.388 14 C 0.318 3.682 15 O -0.394 6.394 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.081 4.081 27 N -0.156 5.156 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.186 0.814 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.166 0.834 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.224 0.776 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.917 -2.392 17.980 34.986 hybrid contribution -0.563 0.983 -1.797 2.124 sum -30.480 -1.409 16.183 34.538 Atomic orbital electron populations 1.20705 0.87619 1.04005 1.03671 1.22377 0.98623 0.89728 0.95622 1.23595 0.90470 0.99298 0.97508 1.68227 1.08897 1.29527 1.08063 1.22075 0.97613 0.89777 0.97229 1.20739 0.87299 1.02776 0.90926 1.60407 1.07535 1.47193 1.15342 1.22622 0.87857 1.02435 0.97199 1.22095 0.91457 0.91592 0.90778 0.87922 1.86609 1.75179 1.16527 1.56716 1.21906 0.93788 1.02568 0.85174 1.45864 1.07501 1.75692 1.09758 1.20332 0.81500 0.75555 0.90814 1.90699 1.53021 1.47700 1.48029 1.23526 1.07042 1.04700 0.95107 1.85372 0.91826 1.94117 1.12126 1.22877 0.95136 1.56894 0.93476 0.90903 1.24986 0.94939 0.94646 0.98960 1.70018 0.98643 1.46516 1.35168 0.86168 0.77863 0.78519 0.82954 1.20274 1.20742 1.19676 1.23606 0.90268 0.99387 0.94851 1.68348 1.08797 1.29342 1.09136 0.89800 0.90085 0.90139 0.81391 0.88783 0.92841 0.83403 0.89804 0.93477 0.77576 0.90846 0.91168 0.76316 0.89128 0.89214 0.92191 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 10.19 36.00 0.37 0.00 16 2 C 0.08 0.52 6.79 -82.41 -0.56 -0.04 16 3 C 0.05 0.34 10.88 -17.37 -0.19 0.15 16 4 N -0.43 -3.59 10.42 -9.29 -0.10 -3.69 16 5 C 0.07 0.55 6.30 -82.41 -0.52 0.03 16 6 C 0.11 0.67 6.01 -4.97 -0.03 0.64 16 7 N -0.67 -4.49 6.36 -115.06 -0.73 -5.23 16 8 C 0.03 0.17 5.35 -3.82 -0.02 0.15 16 9 C 0.10 0.77 3.21 -26.73 -0.09 0.68 16 10 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 11 O -0.55 -4.76 13.15 -35.23 -0.46 -5.22 16 12 C 0.09 0.94 5.31 -4.04 -0.02 0.92 16 13 N -0.73 -9.62 5.50 -60.29 -0.33 -9.95 16 14 C 0.53 9.88 7.85 -10.98 -0.09 9.79 16 15 O -0.52 -11.70 15.86 5.56 0.09 -11.61 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.08 0.59 10.86 -17.37 -0.19 0.40 16 27 N -0.44 -3.74 10.42 -9.29 -0.10 -3.83 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.12 8.09 -51.93 -0.42 -0.30 16 31 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.09 0.41 8.05 -51.93 -0.42 -0.01 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.35 2.58 8.72 -39.29 -0.34 2.24 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.38 2.38 9.05 45.56 0.41 2.79 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.40 4.47 8.47 -40.82 -0.35 4.12 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -37.32 396.31 -8.81 -46.13 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.73 Total: 3.54 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.91 Total: -3.19 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.52 Total: -48.20 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.38 Total: -16.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.32 -8.81 -46.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716079629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.024 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds