Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38393 * 120.00336 * 2 1 4 4 N 1.32120 * 119.99840 * 179.97438 * 3 2 1 5 5 C 1.32153 * 120.00151 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99976 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47217 * 275.00349 * 6 5 4 8 8 C 1.46898 * 110.99589 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46893 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47164 * 60.00204 * 9 8 7 11 11 O 1.42903 * 109.47171 * 299.99938 * 9 8 7 12 12 C 1.53003 * 109.47376 * 180.02562 * 9 8 7 13 13 N 1.46494 * 109.47283 * 185.00021 * 12 9 8 14 14 C 1.34779 * 119.99921 * 179.97438 * 13 12 9 15 15 O 1.21281 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99840 * 179.97438 * 14 13 12 17 17 S 1.80998 * 109.46956 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00083 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00072 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47069 * 90.00667 * 22 20 18 24 24 H 1.48502 * 109.47299 * 210.00539 * 22 20 18 25 25 H 1.48501 * 109.47224 * 330.00519 * 22 20 18 26 26 C 1.38344 * 120.00278 * 0.26505 * 5 4 3 27 27 N 1.32124 * 120.00193 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47074 * 90.00380 * 1 2 3 29 29 H 1.09001 * 109.47464 * 210.00761 * 1 2 3 30 30 H 1.09004 * 109.47221 * 330.00395 * 1 2 3 31 31 H 1.08000 * 119.99995 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.47162 * 155.00209 * 6 5 4 33 33 H 1.09003 * 109.46881 * 35.00494 * 6 5 4 34 34 H 1.00904 * 110.99777 * 56.04865 * 7 6 5 35 35 H 1.08999 * 109.47049 * 60.00398 * 8 7 6 36 36 H 1.08997 * 109.47646 * 300.00448 * 8 7 6 37 37 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 38 38 H 1.09005 * 109.46682 * 304.99749 * 12 9 8 39 39 H 1.08999 * 109.47221 * 64.99915 * 12 9 8 40 40 H 0.96999 * 120.00388 * 359.97438 * 13 12 9 41 41 H 1.08992 * 109.47506 * 300.00283 * 16 14 13 42 42 H 1.08999 * 109.46876 * 60.00368 * 16 14 13 43 43 H 0.97000 * 120.00215 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.00170 * 179.72029 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1984 0.0005 5 6 4.1809 0.0538 0.0015 6 6 5.6879 0.0538 0.0015 7 7 6.1776 0.1733 -1.3783 8 6 7.6461 0.1772 -1.4171 9 6 8.1175 0.3034 -2.8672 10 1 7.7403 1.2336 -3.2922 11 8 7.6238 -0.8019 -3.6266 12 6 9.6470 0.3069 -2.9079 13 7 10.0985 0.5472 -4.2806 14 6 11.4166 0.5934 -4.5582 15 8 12.2289 0.4364 -3.6714 16 6 11.8810 0.8400 -5.9705 17 16 13.6903 0.8442 -6.0185 18 6 13.9502 1.1456 -7.7350 19 1 13.1048 1.2635 -8.3966 20 6 15.2414 1.2313 -8.2368 21 7 16.2719 1.0871 -7.4306 22 14 15.5169 1.5501 -10.0567 23 1 15.5924 3.0136 -10.2970 24 1 16.7879 0.9120 -10.4842 25 1 14.3894 0.9781 -10.8356 26 6 3.4891 -1.1442 -0.0035 27 7 2.1676 -1.1442 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6590 2.1338 -0.0004 32 1 6.0512 -0.8773 0.4366 33 1 6.0513 0.8961 0.5903 34 1 5.8022 0.9964 -1.8252 35 1 8.0232 -0.7528 -0.9918 36 1 8.0227 1.0205 -0.8383 37 1 7.9200 -1.6642 -3.3043 38 1 10.0259 1.0953 -2.2575 39 1 10.0217 -0.6578 -2.5658 40 1 9.4488 0.6732 -4.9899 41 1 11.5025 0.0513 -6.6205 42 1 11.5059 1.8044 -6.3130 43 1 17.1743 1.1474 -7.7812 44 1 4.0291 -2.0795 -0.0072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716079629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -77.759472 kcal Electronic energy + Delta-G solvation = -24955.743531 eV Core-core repulsion = 21032.788802 eV Total energy + Delta-G solvation = -3922.954729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.12820 -40.71664 -39.03713 -36.93660 -35.33740 -35.16091 -34.58334 -33.82624 -31.91798 -30.69091 -29.11154 -27.67708 -26.41513 -25.68390 -24.53704 -22.90131 -22.61377 -21.66855 -19.85493 -18.81594 -18.19485 -17.89772 -17.49490 -17.18839 -16.87975 -16.76241 -16.45142 -16.36275 -16.23914 -15.72981 -15.56696 -15.38779 -14.91235 -14.60568 -14.38232 -14.06901 -13.95704 -13.76269 -13.52175 -13.24134 -13.19337 -13.16514 -12.96349 -12.88979 -12.82856 -12.61272 -12.55936 -12.11560 -11.95021 -11.74230 -11.19384 -11.14231 -10.85318 -10.28366 -10.14229 -10.08981 -10.05815 -9.42705 -8.66672 -8.34777 -6.12846 -0.24292 0.12232 1.26964 1.42625 1.46945 1.57679 1.60657 2.21789 2.28103 2.58833 2.98682 2.99495 3.19728 3.26780 3.33169 3.49181 3.57555 3.75025 3.83878 3.90499 4.05922 4.11085 4.13305 4.16402 4.29636 4.45800 4.51331 4.51570 4.63606 4.65587 4.71037 4.75367 4.75988 4.85110 5.06450 5.11615 5.40237 5.42012 5.45047 5.85972 6.19842 6.20403 6.32509 6.48179 6.80061 6.86994 7.06700 7.23201 8.74506 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035032 B = 0.001371 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.074666 B =20424.023423 C =20818.711293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.069 3.931 3 C 0.046 3.954 4 N -0.455 5.455 5 C 0.064 3.936 6 C 0.117 3.883 7 N -0.677 5.677 8 C 0.035 3.965 9 C 0.116 3.884 10 H 0.106 0.894 11 O -0.558 6.558 12 C 0.090 3.910 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.131 4.131 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.259 1.259 26 C 0.069 3.931 27 N -0.468 5.468 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.195 0.805 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.342 0.658 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.387 0.613 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.399 -1.615 16.145 37.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.071 4.071 3 C -0.115 4.115 4 N -0.170 5.170 5 C -0.076 4.076 6 C -0.013 4.013 7 N -0.308 5.308 8 C -0.095 4.095 9 C 0.056 3.944 10 H 0.123 0.877 11 O -0.365 6.365 12 C -0.035 4.035 13 N -0.362 5.362 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.282 4.282 17 S 0.078 5.922 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.183 1.183 26 C -0.091 4.091 27 N -0.184 5.184 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.212 0.788 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.236 0.764 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -32.219 -2.099 17.203 36.584 hybrid contribution -0.029 0.875 -1.472 1.713 sum -32.248 -1.224 15.731 35.901 Atomic orbital electron populations 1.20800 0.85548 1.04989 1.04395 1.22884 1.00063 0.89410 0.94777 1.24068 0.90182 1.00429 0.96797 1.68244 1.09850 1.30103 1.08788 1.22271 0.98265 0.89687 0.97387 1.20763 0.86509 1.03513 0.90481 1.60411 1.07676 1.46913 1.15800 1.22547 0.87627 1.03288 0.96030 1.21942 0.89087 0.91545 0.91812 0.87659 1.86589 1.75266 1.17356 1.57303 1.22114 0.95785 1.02458 0.83136 1.45638 1.05680 1.73321 1.11572 1.20028 0.82911 0.75610 0.89505 1.90688 1.54615 1.50289 1.48853 1.23378 1.01296 1.06418 0.97135 1.85523 0.99205 1.94460 1.13036 1.23217 0.95873 1.56928 0.93597 0.89997 1.26107 0.94487 0.93996 1.04386 1.70179 0.99240 1.47634 1.37701 0.84962 0.78125 0.78733 0.76211 1.19282 1.20222 1.18278 1.23897 0.90271 1.00127 0.94769 1.68376 1.09434 1.30434 1.10130 0.89045 0.90478 0.87781 0.78794 0.87152 0.93070 0.84011 0.88720 0.92940 0.76365 0.91040 0.91188 0.74741 0.87397 0.87327 0.91963 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 71.23 0.73 0.17 16 2 C 0.07 0.87 6.79 42.55 0.29 1.16 16 3 C 0.05 0.55 10.88 84.69 0.92 1.47 16 4 N -0.45 -7.19 10.42 -183.29 -1.91 -9.10 16 5 C 0.06 0.91 6.30 42.54 0.27 1.17 16 6 C 0.12 1.23 6.01 85.56 0.51 1.75 16 7 N -0.68 -7.94 6.36 -517.93 -3.29 -11.23 16 8 C 0.03 0.35 5.35 86.30 0.46 0.81 16 9 C 0.12 1.52 3.21 30.60 0.10 1.62 16 10 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 11 O -0.56 -8.48 13.15 -148.98 -1.96 -10.44 16 12 C 0.09 1.71 5.31 86.38 0.46 2.16 16 13 N -0.71 -17.31 5.50 -463.06 -2.55 -19.86 16 14 C 0.53 19.45 7.85 87.66 0.69 20.13 16 15 O -0.57 -25.76 15.86 -3.03 -0.05 -25.81 16 16 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 17 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 18 C -0.55 -31.49 9.50 67.95 0.65 -30.85 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 20 C 0.02 0.86 5.49 84.86 0.47 1.33 16 21 N -0.91 -56.05 13.22 21.65 0.29 -55.77 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 C 0.07 0.98 10.86 84.67 0.92 1.90 16 27 N -0.47 -7.69 10.42 -183.30 -1.91 -9.60 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.07 8.09 -2.38 -0.02 0.05 16 31 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.11 0.76 8.05 -2.39 -0.02 0.74 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.34 4.63 8.72 -89.69 -0.78 3.85 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.39 4.04 9.05 -74.06 -0.67 3.37 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.42 8.16 8.47 -92.71 -0.79 7.37 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -82.53 396.31 -4.81 -87.34 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -1.19 Total: 20.18 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 6.90 Total: -1.95 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -9.38 Total: -105.56 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -2.01 Total: -36.25 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -82.53 -4.81 -87.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716079629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.582 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds