Wall clock time and date at job start Sat Apr 11 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30704 * 122.10666 * 2 1 4 4 C 1.30550 * 115.90382 * 179.73368 * 3 2 1 5 5 C 1.47258 * 125.53922 * 180.02562 * 4 3 2 6 6 O 1.21616 * 120.00409 * 359.97438 * 5 4 3 7 7 N 1.34786 * 119.99917 * 179.97438 * 5 4 3 8 8 C 1.46495 * 119.99831 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47351 * 324.99740 * 8 7 5 10 10 C 1.52998 * 109.47052 * 84.99970 * 8 7 5 11 11 C 1.53002 * 109.46862 * 204.99755 * 8 7 5 12 12 N 1.46902 * 109.46824 * 55.00419 * 11 8 7 13 13 C 1.46908 * 110.99773 * 179.97438 * 12 11 8 14 14 C 1.50694 * 109.47104 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99990 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00220 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00245 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00119 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99719 * 180.02562 * 17 16 14 20 20 N 1.31404 * 120.00585 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99435 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47197 * 60.00556 * 21 19 17 23 23 H 1.48500 * 109.46662 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47227 * 300.00172 * 21 19 17 25 25 S 1.76095 * 108.91732 * 359.97438 * 4 3 2 26 26 C 1.34234 * 122.10674 * 179.71513 * 2 1 3 27 27 C 1.50701 * 125.45293 * 0.24495 * 26 2 1 28 28 H 1.08995 * 109.47490 * 90.02307 * 1 2 3 29 29 H 1.08999 * 109.47113 * 210.02685 * 1 2 3 30 30 H 1.09004 * 109.46924 * 330.02001 * 1 2 3 31 31 H 0.97001 * 119.99719 * 359.97438 * 7 5 4 32 32 H 1.09008 * 109.47233 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47462 * 299.99701 * 10 8 7 34 34 H 1.08997 * 109.47506 * 60.00092 * 10 8 7 35 35 H 1.09001 * 109.46934 * 174.99975 * 11 8 7 36 36 H 1.08995 * 109.47703 * 295.00159 * 11 8 7 37 37 H 1.00893 * 111.00341 * 56.04508 * 12 11 8 38 38 H 1.09001 * 109.46851 * 299.99971 * 13 12 11 39 39 H 1.08990 * 109.46903 * 59.99611 * 13 12 11 40 40 H 0.96997 * 119.99594 * 0.02562 * 16 14 13 41 41 H 0.96990 * 120.00275 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47096 * 90.00285 * 27 26 2 43 43 H 1.09003 * 109.46845 * 210.00336 * 27 26 2 44 44 H 1.09001 * 109.47369 * 330.00130 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2018 1.1071 0.0000 4 6 3.4996 0.9661 0.0055 5 6 4.4800 2.0649 0.0071 6 8 4.0991 3.2198 0.0028 7 7 5.7997 1.7906 0.0135 8 6 6.7750 2.8836 0.0146 9 1 6.3913 3.7136 -0.5788 10 6 7.0146 3.3518 1.4513 11 6 8.0926 2.3920 -0.5881 12 7 7.8417 1.8322 -1.9229 13 6 9.0874 1.3495 -2.5339 14 6 8.7910 0.7831 -3.8985 15 8 7.6538 0.7813 -4.3204 16 7 9.7894 0.2786 -4.6503 17 6 9.5196 -0.2371 -5.8916 18 1 8.5071 -0.2388 -6.2672 19 6 10.5490 -0.7577 -6.6662 20 7 11.7809 -0.7562 -6.2090 21 14 10.1814 -1.4598 -8.3579 22 1 9.5875 -0.4021 -9.2144 23 1 11.4406 -1.9483 -8.9752 24 1 9.2241 -2.5876 -8.2284 25 16 3.8872 -0.7517 0.0120 26 6 2.2205 -1.1370 0.0057 27 6 1.6453 -2.5299 0.0073 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 6.1035 0.8694 0.0173 32 1 7.7407 4.1649 1.4522 33 1 6.0760 3.7021 1.8807 34 1 7.3983 2.5220 2.0447 35 1 8.7888 3.2268 -0.6692 36 1 8.5212 1.6225 0.0540 37 1 7.3852 2.5070 -2.5181 38 1 9.7902 2.1773 -2.6285 39 1 9.5232 0.5730 -1.9054 40 1 10.6987 0.2798 -4.3127 41 1 12.4993 -1.1199 -6.7497 42 1 1.5104 -2.8685 -1.0199 43 1 2.3273 -3.2040 0.5255 44 1 0.6821 -2.5247 0.5176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716464467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:52 Heat of formation + Delta-G solvation = -33.656570 kcal Electronic energy + Delta-G solvation = -26357.871013 eV Core-core repulsion = 22436.828729 eV Total energy + Delta-G solvation = -3921.042284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48089 -39.49608 -38.31227 -36.67980 -34.35312 -33.71171 -33.53049 -31.38335 -31.15666 -30.04798 -27.63662 -26.70486 -25.20470 -24.89533 -23.28314 -21.84273 -20.80283 -19.35822 -19.04618 -18.60460 -17.91562 -17.30322 -16.63447 -15.95184 -15.73814 -15.28525 -14.91532 -14.63823 -14.56824 -14.33262 -14.02054 -13.95955 -13.55728 -13.46198 -13.33686 -13.25906 -13.23607 -12.72298 -12.60568 -12.42977 -12.28933 -12.04403 -11.83631 -11.57200 -11.50789 -11.40049 -11.03968 -11.00628 -10.52812 -10.45943 -10.23459 -9.76110 -9.63324 -9.52127 -9.25569 -8.80775 -8.51610 -8.14495 -7.98549 -6.43875 -3.84745 0.06492 0.97556 1.40338 2.16102 2.71578 3.13058 3.18571 3.24370 3.28829 3.88121 3.99679 4.16307 4.27774 4.52033 4.64155 4.68478 4.77405 5.00100 5.04796 5.06711 5.14524 5.19503 5.24882 5.36247 5.40923 5.45117 5.50414 5.51347 5.53220 5.58198 5.74455 5.83838 5.91935 5.97775 6.00679 6.22357 6.31405 7.09379 7.20280 7.50873 7.53035 7.55405 8.01992 8.03788 8.58934 9.15759 9.51838 10.03355 10.73778 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.002607 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.688317 B =10739.214211 C =12674.736809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.046 3.954 3 N -0.396 5.396 4 C -0.005 4.005 5 C 0.600 3.400 6 O -0.509 6.509 7 N -0.698 5.698 8 C 0.148 3.852 9 H 0.092 0.908 10 C -0.163 4.163 11 C 0.047 3.953 12 N -0.669 5.669 13 C 0.051 3.949 14 C 0.439 3.561 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 S 0.192 5.808 26 C -0.233 4.233 27 C -0.078 4.078 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.404 0.596 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.352 0.648 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 -0.720 18.305 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 N -0.112 5.112 4 C -0.281 4.281 5 C 0.381 3.619 6 O -0.383 6.383 7 N -0.350 5.350 8 C 0.043 3.957 9 H 0.110 0.890 10 C -0.222 4.222 11 C -0.083 4.083 12 N -0.302 5.302 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 S 0.448 5.552 26 C -0.356 4.356 27 C -0.137 4.137 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.240 0.760 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.601 -0.570 18.151 22.103 hybrid contribution 0.247 -0.063 -1.007 1.039 sum -12.354 -0.633 17.144 21.141 Atomic orbital electron populations 1.20399 0.86921 1.03311 1.03135 1.20212 0.98819 0.85731 1.04402 1.66469 1.03538 1.30417 1.10773 1.27264 0.94216 0.95478 1.11118 1.16623 0.81517 0.86500 0.77263 1.90831 1.79245 1.19549 1.48671 1.45601 1.04187 1.10830 1.74376 1.21049 0.87916 0.89723 0.97006 0.89018 1.22161 1.02642 1.01655 0.95698 1.22333 0.95045 0.98985 0.91969 1.60083 1.23623 1.43390 1.03087 1.21679 0.91099 0.99597 0.95830 1.19799 0.86155 0.84828 0.86742 1.90539 1.21301 1.61358 1.73406 1.41854 1.08980 1.53184 1.15977 1.19650 0.96042 1.35428 0.91822 0.87999 1.25253 0.94720 0.97742 1.00161 1.69593 0.99646 1.46361 1.38742 0.85926 0.77492 0.79367 0.81496 1.19900 1.20963 1.19875 1.83936 1.04173 1.02977 1.64067 1.25448 0.97882 1.01894 1.10367 1.20333 1.01185 0.88655 1.03514 0.90502 0.90646 0.90495 0.76036 0.91198 0.91694 0.92107 0.93422 0.90243 0.82839 0.93730 0.89537 0.77473 0.91805 0.89890 0.90781 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.02 36.01 0.36 -0.30 16 2 C 0.05 0.54 6.68 -84.48 -0.56 -0.02 16 3 N -0.40 -5.91 10.57 -7.69 -0.08 -5.99 16 4 C 0.00 -0.07 7.46 -14.43 -0.11 -0.17 16 5 C 0.60 8.91 7.77 -12.59 -0.10 8.81 16 6 O -0.51 -9.15 16.73 5.26 0.09 -9.06 16 7 N -0.70 -8.44 4.80 -54.94 -0.26 -8.70 16 8 C 0.15 1.61 2.81 -67.93 -0.19 1.42 16 9 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 10 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 11 C 0.05 0.50 5.24 -3.82 -0.02 0.48 16 12 N -0.67 -9.95 5.85 -115.06 -0.67 -10.62 16 13 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 14 C 0.44 10.09 7.82 -10.99 -0.09 10.00 16 15 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 16 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 21 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 S 0.19 2.08 22.28 -107.50 -2.39 -0.31 16 26 C -0.23 -2.37 6.36 -35.72 -0.23 -2.60 16 27 C -0.08 -0.51 10.04 36.01 0.36 -0.15 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.44 6.60 -51.93 -0.34 0.09 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 4.44 7.75 -40.82 -0.32 4.12 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.35 5.77 8.43 -39.30 -0.33 5.44 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.40 6.64 -51.93 -0.34 0.06 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -34.66 390.17 -8.42 -43.08 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.21 Total: 13.65 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.49 Total: 9.27 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.35 Total: -62.92 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.18 Total: -24.54 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.39 Total: -0.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.66 -8.42 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716464467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.419 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds