Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30704 * 122.10666 * 2 1 4 4 C 1.30550 * 115.90382 * 179.73368 * 3 2 1 5 5 C 1.47258 * 125.53922 * 180.02562 * 4 3 2 6 6 O 1.21616 * 120.00409 * 359.97438 * 5 4 3 7 7 N 1.34786 * 119.99917 * 179.97438 * 5 4 3 8 8 C 1.46495 * 119.99831 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47351 * 324.99740 * 8 7 5 10 10 C 1.52998 * 109.47052 * 84.99970 * 8 7 5 11 11 C 1.53002 * 109.46862 * 204.99755 * 8 7 5 12 12 N 1.46902 * 109.46824 * 55.00419 * 11 8 7 13 13 C 1.46908 * 110.99773 * 179.97438 * 12 11 8 14 14 C 1.50694 * 109.47104 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99990 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00220 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00245 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00119 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99719 * 180.02562 * 17 16 14 20 20 N 1.31404 * 120.00585 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99435 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47197 * 60.00556 * 21 19 17 23 23 H 1.48500 * 109.46662 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47227 * 300.00172 * 21 19 17 25 25 S 1.76095 * 108.91732 * 359.97438 * 4 3 2 26 26 C 1.34234 * 122.10674 * 179.71513 * 2 1 3 27 27 C 1.50701 * 125.45293 * 0.24495 * 26 2 1 28 28 H 1.08995 * 109.47490 * 90.02307 * 1 2 3 29 29 H 1.08999 * 109.47113 * 210.02685 * 1 2 3 30 30 H 1.09004 * 109.46924 * 330.02001 * 1 2 3 31 31 H 0.97001 * 119.99719 * 359.97438 * 7 5 4 32 32 H 1.09008 * 109.47233 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.47462 * 299.99701 * 10 8 7 34 34 H 1.08997 * 109.47506 * 60.00092 * 10 8 7 35 35 H 1.09001 * 109.46934 * 174.99975 * 11 8 7 36 36 H 1.08995 * 109.47703 * 295.00159 * 11 8 7 37 37 H 1.00893 * 111.00341 * 56.04508 * 12 11 8 38 38 H 1.09001 * 109.46851 * 299.99971 * 13 12 11 39 39 H 1.08990 * 109.46903 * 59.99611 * 13 12 11 40 40 H 0.96997 * 119.99594 * 0.02562 * 16 14 13 41 41 H 0.96990 * 120.00275 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47096 * 90.00285 * 27 26 2 43 43 H 1.09003 * 109.46845 * 210.00336 * 27 26 2 44 44 H 1.09001 * 109.47369 * 330.00130 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2018 1.1071 0.0000 4 6 3.4996 0.9661 0.0055 5 6 4.4800 2.0649 0.0071 6 8 4.0991 3.2198 0.0028 7 7 5.7997 1.7906 0.0135 8 6 6.7750 2.8836 0.0146 9 1 6.3913 3.7136 -0.5788 10 6 7.0146 3.3518 1.4513 11 6 8.0926 2.3920 -0.5881 12 7 7.8417 1.8322 -1.9229 13 6 9.0874 1.3495 -2.5339 14 6 8.7910 0.7831 -3.8985 15 8 7.6538 0.7813 -4.3204 16 7 9.7894 0.2786 -4.6503 17 6 9.5196 -0.2371 -5.8916 18 1 8.5071 -0.2388 -6.2672 19 6 10.5490 -0.7577 -6.6662 20 7 11.7809 -0.7562 -6.2090 21 14 10.1814 -1.4598 -8.3579 22 1 9.5875 -0.4021 -9.2144 23 1 11.4406 -1.9483 -8.9752 24 1 9.2241 -2.5876 -8.2284 25 16 3.8872 -0.7517 0.0120 26 6 2.2205 -1.1370 0.0057 27 6 1.6453 -2.5299 0.0073 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 6.1035 0.8694 0.0173 32 1 7.7407 4.1649 1.4522 33 1 6.0760 3.7021 1.8807 34 1 7.3983 2.5220 2.0447 35 1 8.7888 3.2268 -0.6692 36 1 8.5212 1.6225 0.0540 37 1 7.3852 2.5070 -2.5181 38 1 9.7902 2.1773 -2.6285 39 1 9.5232 0.5730 -1.9054 40 1 10.6987 0.2798 -4.3127 41 1 12.4993 -1.1199 -6.7497 42 1 1.5104 -2.8685 -1.0199 43 1 2.3273 -3.2040 0.5255 44 1 0.6821 -2.5247 0.5176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716464467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = -61.623050 kcal Electronic energy + Delta-G solvation = -26359.083730 eV Core-core repulsion = 22436.828729 eV Total energy + Delta-G solvation = -3922.255002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45033 -40.51228 -40.07568 -37.82450 -36.03767 -35.19801 -34.34275 -33.25258 -32.25757 -30.72765 -28.95869 -27.55909 -26.68296 -25.85937 -24.58733 -22.76390 -21.81580 -21.04417 -20.06336 -19.85739 -19.50928 -18.31319 -17.84736 -17.40488 -16.73144 -16.64201 -16.36669 -16.04019 -15.77076 -15.61034 -15.18621 -15.04612 -14.90806 -14.59961 -14.12574 -14.06402 -14.00405 -13.84703 -13.58313 -13.45576 -13.26136 -13.07464 -12.99438 -12.86078 -12.80113 -12.72568 -12.42737 -12.16882 -12.12917 -11.87613 -11.62241 -11.49557 -10.75992 -10.50068 -10.36955 -10.24584 -10.00417 -9.65712 -9.34975 -8.46098 -5.94419 -0.86436 0.07731 0.52763 1.20730 1.39585 1.41679 1.52129 1.75861 2.07731 2.09413 2.29205 2.88932 3.21624 3.31031 3.54187 3.73710 3.81191 3.87881 3.99072 4.14410 4.32059 4.37775 4.53284 4.54229 4.61050 4.63234 4.65588 4.73646 4.74218 4.77756 4.78255 4.91116 5.00767 5.02359 5.27489 5.32524 5.37756 5.41340 5.87346 6.09535 6.22703 6.30747 6.60114 6.61684 6.97827 7.14016 7.58311 8.14245 8.70996 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.002607 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.688317 B =10739.214211 C =12674.736809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 N -0.430 5.430 4 C -0.049 4.049 5 C 0.595 3.405 6 O -0.555 6.555 7 N -0.686 5.686 8 C 0.145 3.855 9 H 0.070 0.930 10 C -0.154 4.154 11 C 0.054 3.946 12 N -0.683 5.683 13 C 0.066 3.934 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.989 3.011 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.272 1.272 25 S 0.231 5.769 26 C -0.221 4.221 27 C -0.081 4.081 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.410 0.590 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.340 0.660 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 -2.503 19.297 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 N -0.148 5.148 4 C -0.323 4.323 5 C 0.378 3.622 6 O -0.433 6.433 7 N -0.338 5.338 8 C 0.041 3.959 9 H 0.088 0.912 10 C -0.212 4.212 11 C -0.075 4.075 12 N -0.315 5.315 13 C -0.066 4.066 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.094 0.906 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.813 3.187 22 H -0.199 1.199 23 H -0.194 1.194 24 H -0.197 1.197 25 S 0.487 5.513 26 C -0.344 4.344 27 C -0.140 4.140 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.834 -2.362 19.177 22.658 hybrid contribution -0.017 0.420 -1.276 1.343 sum -11.851 -1.942 17.902 21.557 Atomic orbital electron populations 1.20509 0.84823 1.04448 1.03753 1.20738 1.00340 0.85526 1.05157 1.66471 1.04372 1.32588 1.11361 1.27142 0.94176 0.97133 1.13858 1.16895 0.82379 0.86286 0.76649 1.90782 1.80061 1.21309 1.51160 1.45611 1.03582 1.11510 1.73100 1.21166 0.87668 0.88817 0.98251 0.91208 1.22086 1.02281 1.02896 0.93970 1.22415 0.95043 1.00363 0.89722 1.60087 1.23058 1.43946 1.04420 1.21548 0.92206 1.00820 0.92004 1.20978 0.85013 0.83067 0.88566 1.90511 1.23094 1.62579 1.74964 1.41919 1.09657 1.53830 1.15656 1.19593 0.95388 1.37619 0.93731 0.90564 1.25982 0.94422 0.97466 1.03241 1.69647 1.00093 1.46388 1.39888 0.85044 0.77796 0.78534 0.77315 1.19936 1.19431 1.19686 1.83671 1.04704 1.00084 1.62863 1.26034 0.97425 1.03290 1.07651 1.20567 1.02474 0.86310 1.04610 0.90080 0.87605 0.91273 0.75315 0.89216 0.93630 0.90299 0.91226 0.87912 0.84221 0.91313 0.86930 0.76887 0.91295 0.88927 0.89320 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.02 71.24 0.71 -0.49 16 2 C 0.02 0.46 6.68 41.81 0.28 0.74 16 3 N -0.43 -13.39 10.57 -178.24 -1.88 -15.28 16 4 C -0.05 -1.45 7.46 87.26 0.65 -0.80 16 5 C 0.60 18.66 7.77 86.61 0.67 19.33 16 6 O -0.55 -21.43 16.73 -4.08 -0.07 -21.50 16 7 N -0.69 -16.73 4.80 -445.96 -2.14 -18.87 16 8 C 0.15 3.08 2.81 44.99 0.13 3.20 16 9 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 10 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 11 C 0.05 1.00 5.24 86.30 0.45 1.46 16 12 N -0.68 -19.44 5.85 -517.93 -3.03 -22.47 16 13 C 0.07 2.05 6.17 85.55 0.53 2.58 16 14 C 0.44 20.02 7.82 87.66 0.69 20.70 16 15 O -0.63 -34.19 15.78 -3.07 -0.05 -34.24 16 16 N -0.57 -28.65 5.29 -306.99 -1.62 -30.27 16 17 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 18 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 19 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 20 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 21 Si 0.99 42.60 29.55 68.60 2.03 44.62 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 S 0.23 4.84 22.28 -56.49 -1.26 3.58 16 26 C -0.22 -4.17 6.36 24.77 0.16 -4.01 16 27 C -0.08 -0.81 10.04 71.24 0.72 -0.10 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.11 0.95 6.60 -2.39 -0.02 0.93 16 30 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.41 8.77 7.75 -92.71 -0.72 8.05 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.34 11.16 8.43 -89.70 -0.76 10.40 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 41 H 0.28 13.85 8.31 -92.72 -0.77 13.08 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 0.62 6.64 -2.39 -0.02 0.60 16 Total: -1.00 -78.92 390.17 -1.94 -80.85 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -1.14 Total: 39.38 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.95 Total: 22.74 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -8.39 Total: -135.44 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.12 Total: -55.73 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.26 Total: 3.58 kcal Total: -78.92 -1.94 -80.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716464467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.230 kcal (2) G-P(sol) polarization free energy of solvation -78.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds