Wall clock time and date at job start Sat Apr 11 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 127.24918 * 2 1 4 4 N 1.35037 * 107.23000 * 179.88118 * 3 2 1 5 5 H 0.97002 * 124.88642 * 180.14772 * 4 3 2 6 6 N 1.28468 * 110.22780 * 0.40722 * 4 3 2 7 7 C 1.31807 * 110.07644 * 359.74710 * 6 4 3 8 8 C 1.47708 * 126.52092 * 180.02562 * 7 6 4 9 9 O 1.21572 * 120.00054 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00013 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00141 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47483 * 64.99984 * 12 11 10 14 14 C 1.52998 * 109.46917 * 185.00152 * 12 11 10 15 15 N 1.46501 * 109.46663 * 304.99689 * 12 11 10 16 16 C 1.46500 * 120.00343 * 299.99904 * 15 12 11 17 17 C 1.34782 * 119.99921 * 120.00552 * 15 12 11 18 18 O 1.21288 * 119.99705 * 359.97438 * 17 15 12 19 19 C 1.50695 * 119.99989 * 179.97438 * 17 15 12 20 20 S 1.81006 * 109.46972 * 179.97438 * 19 17 15 21 21 C 1.76192 * 99.99896 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00620 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99879 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00138 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47438 * 60.00005 * 25 23 21 27 27 H 1.48507 * 109.46909 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46963 * 299.99743 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.67947 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68047 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68028 * 1 2 3 32 32 H 1.08007 * 126.38713 * 0.02562 * 3 2 1 33 33 H 0.97003 * 120.00179 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47065 * 300.00389 * 11 10 8 35 35 H 1.08996 * 109.46737 * 60.00266 * 11 10 8 36 36 H 1.08999 * 109.47095 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47044 * 299.99540 * 14 12 11 38 38 H 1.09002 * 109.47181 * 59.99647 * 14 12 11 39 39 H 1.09004 * 109.47066 * 90.00260 * 16 15 12 40 40 H 1.08998 * 109.47532 * 210.00143 * 16 15 12 41 41 H 1.09000 * 109.47276 * 330.00498 * 16 15 12 42 42 H 1.08997 * 109.47513 * 299.99442 * 19 17 15 43 43 H 1.09000 * 109.47160 * 60.00392 * 19 17 15 44 44 H 0.96997 * 120.00180 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0027 5 1 4.3888 1.1729 0.0053 6 7 3.5998 -0.6695 -0.0043 7 6 2.3635 -1.1264 -0.0063 8 6 1.9505 -2.5446 -0.0133 9 8 0.7697 -2.8339 -0.0141 10 7 2.8828 -3.5179 -0.0189 11 6 2.4732 -4.9245 -0.0264 12 6 3.7157 -5.8174 -0.0309 13 1 4.2641 -5.6817 0.9013 14 6 3.2912 -7.2812 -0.1645 15 7 4.5746 -5.4530 -1.1604 16 6 4.0641 -5.5499 -2.5301 17 6 5.8347 -5.0287 -0.9394 18 8 6.2572 -4.9481 0.1947 19 6 6.7184 -4.6544 -2.1012 20 16 8.3364 -4.1282 -1.4835 21 6 9.1411 -3.7613 -3.0074 22 1 8.6140 -3.8902 -3.9412 23 6 10.4525 -3.3066 -3.0078 24 7 11.0948 -3.1490 -1.8697 25 14 11.3054 -2.9169 -4.6234 26 1 10.5557 -1.8503 -5.3343 27 1 12.6897 -2.4520 -4.3528 28 1 11.3489 -4.1380 -5.4673 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5188 31 1 -0.3633 0.8929 -0.5089 32 1 2.0220 2.1138 0.0004 33 1 3.8249 -3.2871 -0.0179 34 1 1.8785 -5.1345 0.8626 35 1 1.8781 -5.1248 -0.9173 36 1 4.1763 -7.9173 -0.1682 37 1 2.6521 -7.5523 0.6758 38 1 2.7427 -7.4168 -1.0967 39 1 3.6010 -4.6046 -2.8131 40 1 4.8873 -5.7691 -3.2101 41 1 3.3240 -6.3482 -2.5864 42 1 6.8422 -5.5168 -2.7562 43 1 6.2595 -3.8377 -2.6584 44 1 12.0114 -2.8316 -1.8700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718157104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:07 Heat of formation + Delta-G solvation = 1.280725 kcal Electronic energy + Delta-G solvation = -27262.342103 eV Core-core repulsion = 23342.814813 eV Total energy + Delta-G solvation = -3919.527289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.79586 -40.06597 -39.05056 -36.47769 -34.26865 -33.15689 -32.44726 -32.26477 -31.20383 -28.73295 -27.37763 -26.89994 -26.60534 -25.50201 -23.70221 -21.69134 -20.76833 -20.12208 -19.08849 -18.33487 -17.74265 -17.14363 -16.94249 -16.23137 -15.99888 -15.45610 -15.40491 -14.82975 -14.76512 -14.30570 -14.09216 -13.65869 -13.38442 -13.27570 -13.16683 -13.08439 -13.01246 -12.91980 -12.55079 -12.32940 -12.26733 -12.23809 -11.98125 -11.79038 -11.09078 -11.06034 -11.03466 -10.91518 -10.78047 -10.11599 -9.83116 -9.60316 -9.40695 -9.12733 -9.07689 -8.96877 -8.60106 -8.24411 -6.51222 -6.23332 -3.93570 1.48914 1.93569 2.69959 2.86543 2.99872 3.16373 3.21336 3.24701 3.27326 3.35686 3.59044 4.18715 4.33195 4.52687 4.61370 4.85534 5.02410 5.05856 5.08770 5.11214 5.11752 5.14656 5.34673 5.37521 5.45517 5.49407 5.53979 5.57999 5.64079 5.73984 5.79440 5.87901 5.92750 5.99504 6.03213 6.12794 6.30542 6.36388 6.62953 6.82054 7.39644 7.48053 7.57615 7.75286 8.15791 8.33201 8.50573 9.21924 10.83952 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003293 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.390052 B = 8500.219623 C =10552.464236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.148 4.148 3 C -0.023 4.023 4 N -0.376 5.376 5 H 0.450 0.550 6 N -0.245 5.245 7 C -0.021 4.021 8 C 0.606 3.394 9 O -0.537 6.537 10 N -0.712 5.712 11 C 0.112 3.888 12 C 0.123 3.877 13 H 0.110 0.890 14 C -0.157 4.157 15 N -0.619 5.619 16 C 0.078 3.922 17 C 0.533 3.467 18 O -0.515 6.515 19 C -0.150 4.150 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.184 0.816 33 H 0.412 0.588 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 2.817 1.812 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.159 4.159 3 C -0.167 4.167 4 N -0.091 5.091 5 H 0.295 0.705 6 N -0.082 5.082 7 C -0.182 4.182 8 C 0.391 3.609 9 O -0.413 6.413 10 N -0.364 5.364 11 C -0.012 4.012 12 C 0.018 3.982 13 H 0.128 0.872 14 C -0.215 4.215 15 N -0.356 5.356 16 C -0.065 4.065 17 C 0.321 3.679 18 O -0.389 6.389 19 C -0.300 4.300 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.201 0.799 33 H 0.248 0.752 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.926 2.378 3.583 20.385 hybrid contribution 0.246 0.971 -2.498 2.691 sum -19.680 3.349 1.085 19.992 Atomic orbital electron populations 1.20161 0.88116 1.02958 1.02307 1.20373 0.97515 0.90403 1.07566 1.22721 0.84223 1.00569 1.09160 1.43302 1.08750 1.04421 1.52600 0.70544 1.73683 1.22888 0.93948 1.17635 1.21846 0.89645 0.95038 1.11633 1.16843 0.85251 0.82683 0.76122 1.90747 1.16785 1.82849 1.50916 1.45812 1.10670 1.05696 1.74173 1.21778 0.96610 0.79958 1.02885 1.21297 0.90648 0.94015 0.92197 0.87237 1.22051 1.02285 0.94679 1.02533 1.47937 1.13020 1.67857 1.06779 1.21756 1.00399 1.01657 0.82698 1.20399 0.80936 0.75749 0.90781 1.90705 1.72702 1.51786 1.23707 1.23556 1.02894 1.04182 0.99416 1.85373 1.01146 1.85036 1.11666 1.22823 1.00806 1.51752 0.93003 0.91051 1.24976 0.96264 0.94863 0.97390 1.70003 1.11763 1.43225 1.25307 0.86247 0.78337 0.78856 0.82198 1.19983 1.20813 1.19919 0.91540 0.89992 0.92043 0.79905 0.75151 0.90265 0.90976 0.91385 0.91120 0.91978 0.92809 0.90572 0.91116 0.89253 0.89304 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.93 36.01 0.36 -0.39 16 2 C -0.15 -1.70 6.25 -104.40 -0.65 -2.35 16 3 C -0.02 -0.20 11.97 -17.17 -0.21 -0.40 16 4 N -0.38 -3.75 6.83 30.47 0.21 -3.54 16 5 H 0.45 3.02 8.96 -190.44 -1.71 1.31 16 6 N -0.24 -3.38 11.92 33.42 0.40 -2.98 16 7 C -0.02 -0.29 7.13 -82.76 -0.59 -0.88 16 8 C 0.61 8.85 7.82 -12.39 -0.10 8.75 16 9 O -0.54 -8.51 15.12 5.30 0.08 -8.43 16 10 N -0.71 -9.63 5.38 -61.30 -0.33 -9.96 16 11 C 0.11 1.25 4.97 -4.04 -0.02 1.23 16 12 C 0.12 1.42 2.80 -67.93 -0.19 1.23 16 13 H 0.11 1.50 6.90 -51.93 -0.36 1.14 16 14 C -0.16 -1.38 9.17 37.16 0.34 -1.04 16 15 N -0.62 -8.29 2.24 -173.93 -0.39 -8.68 16 16 C 0.08 0.82 9.40 59.85 0.56 1.39 16 17 C 0.53 9.71 7.40 -10.99 -0.08 9.63 16 18 O -0.51 -11.20 15.19 5.55 0.08 -11.12 16 19 C -0.15 -2.99 4.71 36.00 0.17 -2.83 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 25 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.93 6.72 -51.93 -0.35 0.58 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.41 6.21 7.59 -40.82 -0.31 5.90 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.47 6.66 -51.93 -0.35 0.12 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 41 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 42 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 43 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -36.63 383.98 -8.33 -44.96 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.45 Total: 5.19 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.21 Total: 1.54 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.62 Total: -50.33 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.16 Total: -19.55 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.63 -8.33 -44.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718157104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.242 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds