Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 127.24918 * 2 1 4 4 N 1.35037 * 107.23000 * 179.88118 * 3 2 1 5 5 H 0.97002 * 124.88642 * 180.14772 * 4 3 2 6 6 N 1.28468 * 110.22780 * 0.40722 * 4 3 2 7 7 C 1.31807 * 110.07644 * 359.74710 * 6 4 3 8 8 C 1.47708 * 126.52092 * 180.02562 * 7 6 4 9 9 O 1.21572 * 120.00054 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00013 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00141 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47483 * 64.99984 * 12 11 10 14 14 C 1.52998 * 109.46917 * 185.00152 * 12 11 10 15 15 N 1.46501 * 109.46663 * 304.99689 * 12 11 10 16 16 C 1.46500 * 120.00343 * 299.99904 * 15 12 11 17 17 C 1.34782 * 119.99921 * 120.00552 * 15 12 11 18 18 O 1.21288 * 119.99705 * 359.97438 * 17 15 12 19 19 C 1.50695 * 119.99989 * 179.97438 * 17 15 12 20 20 S 1.81006 * 109.46972 * 179.97438 * 19 17 15 21 21 C 1.76192 * 99.99896 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00620 * 0.02562 * 21 20 19 23 23 C 1.38804 * 119.99879 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00138 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99895 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47438 * 60.00005 * 25 23 21 27 27 H 1.48507 * 109.46909 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46963 * 299.99743 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.67947 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68047 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68028 * 1 2 3 32 32 H 1.08007 * 126.38713 * 0.02562 * 3 2 1 33 33 H 0.97003 * 120.00179 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47065 * 300.00389 * 11 10 8 35 35 H 1.08996 * 109.46737 * 60.00266 * 11 10 8 36 36 H 1.08999 * 109.47095 * 179.97438 * 14 12 11 37 37 H 1.08997 * 109.47044 * 299.99540 * 14 12 11 38 38 H 1.09002 * 109.47181 * 59.99647 * 14 12 11 39 39 H 1.09004 * 109.47066 * 90.00260 * 16 15 12 40 40 H 1.08998 * 109.47532 * 210.00143 * 16 15 12 41 41 H 1.09000 * 109.47276 * 330.00498 * 16 15 12 42 42 H 1.08997 * 109.47513 * 299.99442 * 19 17 15 43 43 H 1.09000 * 109.47160 * 60.00392 * 19 17 15 44 44 H 0.96997 * 120.00180 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0027 5 1 4.3888 1.1729 0.0053 6 7 3.5998 -0.6695 -0.0043 7 6 2.3635 -1.1264 -0.0063 8 6 1.9505 -2.5446 -0.0133 9 8 0.7697 -2.8339 -0.0141 10 7 2.8828 -3.5179 -0.0189 11 6 2.4732 -4.9245 -0.0264 12 6 3.7157 -5.8174 -0.0309 13 1 4.2641 -5.6817 0.9013 14 6 3.2912 -7.2812 -0.1645 15 7 4.5746 -5.4530 -1.1604 16 6 4.0641 -5.5499 -2.5301 17 6 5.8347 -5.0287 -0.9394 18 8 6.2572 -4.9481 0.1947 19 6 6.7184 -4.6544 -2.1012 20 16 8.3364 -4.1282 -1.4835 21 6 9.1411 -3.7613 -3.0074 22 1 8.6140 -3.8902 -3.9412 23 6 10.4525 -3.3066 -3.0078 24 7 11.0948 -3.1490 -1.8697 25 14 11.3054 -2.9169 -4.6234 26 1 10.5557 -1.8503 -5.3343 27 1 12.6897 -2.4520 -4.3528 28 1 11.3489 -4.1380 -5.4673 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5188 31 1 -0.3633 0.8929 -0.5089 32 1 2.0220 2.1138 0.0004 33 1 3.8249 -3.2871 -0.0179 34 1 1.8785 -5.1345 0.8626 35 1 1.8781 -5.1248 -0.9173 36 1 4.1763 -7.9173 -0.1682 37 1 2.6521 -7.5523 0.6758 38 1 2.7427 -7.4168 -1.0967 39 1 3.6010 -4.6046 -2.8131 40 1 4.8873 -5.7691 -3.2101 41 1 3.3240 -6.3482 -2.5864 42 1 6.8422 -5.5168 -2.7562 43 1 6.2595 -3.8377 -2.6584 44 1 12.0114 -2.8316 -1.8700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718157104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -25.751438 kcal Electronic energy + Delta-G solvation = -27263.514305 eV Core-core repulsion = 23342.814813 eV Total energy + Delta-G solvation = -3920.699492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.64655 -41.27827 -40.23534 -37.70327 -35.38957 -34.58832 -33.98211 -33.32531 -32.11916 -30.20314 -28.17909 -27.87439 -27.66098 -27.49054 -24.65273 -22.83613 -21.58970 -21.16459 -20.34000 -19.59430 -19.13636 -18.32931 -18.12732 -17.33544 -16.96374 -16.88384 -16.73687 -16.59750 -16.11275 -15.62023 -15.29155 -14.65722 -14.53465 -14.52517 -14.40476 -14.04512 -13.92997 -13.82942 -13.76095 -13.52819 -13.20206 -13.12427 -13.07883 -13.02696 -12.88050 -12.80705 -12.60714 -11.95593 -11.81826 -11.72395 -11.17507 -11.13431 -10.88988 -10.53672 -10.26822 -10.14046 -9.79363 -9.75572 -8.66063 -8.34762 -6.12312 0.49561 1.17419 1.24732 1.42525 1.44414 1.54037 1.55558 1.88415 2.06672 2.26833 2.29173 2.31633 2.99102 3.26082 3.42448 3.56416 3.78724 3.91827 4.07123 4.16057 4.19136 4.21495 4.28002 4.46512 4.47600 4.55610 4.58492 4.64888 4.65514 4.80277 4.88655 4.92963 5.02649 5.04485 5.19751 5.24931 5.35346 5.40895 5.54219 5.57441 6.12292 6.18825 6.23012 6.33220 6.83756 7.06377 7.08644 7.12127 8.74046 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.003293 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.390052 B = 8500.219623 C =10552.464236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.173 4.173 3 C 0.005 3.995 4 N -0.369 5.369 5 H 0.462 0.538 6 N -0.285 5.285 7 C -0.049 4.049 8 C 0.602 3.398 9 O -0.556 6.556 10 N -0.713 5.713 11 C 0.115 3.885 12 C 0.124 3.876 13 H 0.084 0.916 14 C -0.149 4.149 15 N -0.603 5.603 16 C 0.070 3.930 17 C 0.533 3.467 18 O -0.560 6.560 19 C -0.124 4.124 20 S -0.144 6.144 21 C -0.548 4.548 22 H 0.080 0.920 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.996 3.004 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.404 0.596 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.732 3.375 -0.166 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.184 4.184 3 C -0.140 4.140 4 N -0.084 5.084 5 H 0.309 0.691 6 N -0.123 5.123 7 C -0.208 4.208 8 C 0.387 3.613 9 O -0.433 6.433 10 N -0.363 5.363 11 C -0.009 4.009 12 C 0.021 3.979 13 H 0.102 0.898 14 C -0.207 4.207 15 N -0.338 5.338 16 C -0.072 4.072 17 C 0.321 3.679 18 O -0.438 6.438 19 C -0.275 4.275 20 S 0.083 5.917 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.547 5.547 25 Si 0.817 3.183 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.248 0.752 33 H 0.238 0.762 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.741 2.904 1.584 21.991 hybrid contribution 0.670 0.816 -1.848 2.129 sum -21.071 3.720 -0.265 21.398 Atomic orbital electron populations 1.20134 0.87094 1.03232 1.02504 1.20758 0.98535 0.90390 1.08689 1.23402 0.82869 1.01982 1.05757 1.43433 1.10060 1.03586 1.51360 0.69081 1.73615 1.23319 0.95846 1.19501 1.21992 0.90495 0.95364 1.12999 1.17062 0.85096 0.83329 0.75797 1.90719 1.17282 1.83287 1.52057 1.45919 1.10017 1.06590 1.73818 1.21892 0.96346 0.78654 1.03985 1.21420 0.89993 0.96142 0.90361 0.89802 1.22020 1.02360 0.91757 1.04599 1.47887 1.11390 1.65735 1.08776 1.22034 1.01288 1.03186 0.80682 1.20104 0.82315 0.76045 0.89414 1.90691 1.74034 1.54121 1.24956 1.23370 0.99014 1.04998 1.00154 1.85527 1.06457 1.85873 1.13821 1.23159 1.01421 1.51802 0.93164 0.90164 1.26085 0.97004 0.94353 1.01477 1.70169 1.12190 1.44264 1.28035 0.85046 0.77006 0.79143 0.77068 1.18733 1.20339 1.18691 0.91324 0.92225 0.89220 0.75169 0.76167 0.89338 0.89548 0.92427 0.89121 0.89826 0.92458 0.90355 0.87726 0.87497 0.88119 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 9.93 71.24 0.71 -0.59 16 2 C -0.17 -3.78 6.25 -19.72 -0.12 -3.91 16 3 C 0.00 0.07 11.97 83.53 1.00 1.07 16 4 N -0.37 -6.97 6.83 -57.51 -0.39 -7.36 16 5 H 0.46 5.71 8.96 -219.99 -1.97 3.74 16 6 N -0.29 -7.98 11.92 -48.17 -0.57 -8.56 16 7 C -0.05 -1.38 7.13 42.46 0.30 -1.08 16 8 C 0.60 17.84 7.82 86.75 0.68 18.52 16 9 O -0.56 -17.71 15.12 -3.94 -0.06 -17.77 16 10 N -0.71 -19.53 5.38 -466.11 -2.51 -22.04 16 11 C 0.12 2.45 4.97 86.38 0.43 2.88 16 12 C 0.12 2.77 2.80 44.99 0.13 2.90 16 13 H 0.08 2.37 6.90 -2.39 -0.02 2.35 16 14 C -0.15 -2.29 9.17 71.98 0.66 -1.62 16 15 N -0.60 -15.64 2.24 -822.57 -1.85 -17.49 16 16 C 0.07 1.31 9.40 127.77 1.20 2.51 16 17 C 0.53 19.73 7.40 87.65 0.65 20.37 16 18 O -0.56 -25.49 15.19 -3.06 -0.05 -25.53 16 19 C -0.12 -4.99 4.71 71.23 0.34 -4.65 16 20 S -0.14 -7.97 20.57 -56.49 -1.16 -9.13 16 21 C -0.55 -31.19 9.50 67.96 0.65 -30.54 16 22 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 23 C 0.02 0.89 5.49 84.86 0.47 1.36 16 24 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 25 Si 1.00 43.28 29.55 68.60 2.03 45.30 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.34 6.72 -2.39 -0.02 1.33 16 31 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.23 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.40 12.64 7.59 -92.71 -0.70 11.93 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.94 6.66 -2.39 -0.02 0.92 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.08 1.47 6.44 -2.39 -0.02 1.46 16 41 H 0.10 1.29 6.43 -2.39 -0.02 1.28 16 42 H 0.11 3.89 7.40 -2.40 -0.02 3.87 16 43 H 0.10 3.78 8.11 -2.40 -0.02 3.76 16 44 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.99 383.98 1.18 -82.82 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -1.62 Total: 27.85 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 7.08 Total: 7.22 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -5.04 Total: -110.75 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.11 Total: -43.30 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -83.99 1.18 -82.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718157104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.064 kcal (2) G-P(sol) polarization free energy of solvation -83.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds