Wall clock time and date at job start Sat Apr 11 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 127.24918 * 2 1 4 4 N 1.35037 * 107.23000 * 179.88118 * 3 2 1 5 5 H 0.97002 * 124.88642 * 180.14772 * 4 3 2 6 6 N 1.28468 * 110.22780 * 0.40722 * 4 3 2 7 7 C 1.31807 * 110.07644 * 359.74710 * 6 4 3 8 8 C 1.47708 * 126.52092 * 180.02562 * 7 6 4 9 9 O 1.21572 * 120.00054 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00013 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00141 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46866 * 304.99567 * 12 11 10 14 14 C 1.52995 * 109.47433 * 64.99781 * 12 11 10 15 15 C 1.52998 * 109.46917 * 185.00152 * 12 11 10 16 16 N 1.46500 * 109.47095 * 174.99662 * 15 12 11 17 17 C 1.34780 * 120.00005 * 180.02562 * 16 15 12 18 18 O 1.21280 * 119.99729 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99871 * 179.97438 * 17 16 15 20 20 S 1.81000 * 109.47018 * 179.97438 * 19 17 16 21 21 C 1.76198 * 100.00230 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99967 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00403 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99946 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99576 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46660 * 90.00241 * 25 23 21 27 27 H 1.48493 * 109.46731 * 209.99739 * 25 23 21 28 28 H 1.48493 * 109.47278 * 329.99934 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.67947 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68047 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68028 * 1 2 3 32 32 H 1.08007 * 126.38713 * 0.02562 * 3 2 1 33 33 H 0.97003 * 120.00179 * 0.02562 * 10 8 7 34 34 H 1.08999 * 109.47065 * 300.00389 * 11 10 8 35 35 H 1.08996 * 109.46737 * 60.00266 * 11 10 8 36 36 H 1.08999 * 109.47246 * 299.99928 * 14 12 11 37 37 H 1.08997 * 109.47078 * 60.00124 * 14 12 11 38 38 H 1.08997 * 109.47270 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.47041 * 294.99887 * 15 12 11 40 40 H 1.09004 * 109.47339 * 54.99599 * 15 12 11 41 41 H 0.97000 * 120.00015 * 359.97438 * 16 15 12 42 42 H 1.08992 * 109.47581 * 299.99670 * 19 17 16 43 43 H 1.08999 * 109.47280 * 60.00255 * 19 17 16 44 44 H 0.96993 * 119.99397 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0027 5 1 4.3888 1.1729 0.0053 6 7 3.5998 -0.6695 -0.0043 7 6 2.3635 -1.1264 -0.0063 8 6 1.9505 -2.5446 -0.0133 9 8 0.7697 -2.8339 -0.0141 10 7 2.8828 -3.5179 -0.0189 11 6 2.4732 -4.9245 -0.0264 12 6 3.7157 -5.8174 -0.0309 13 1 4.3548 -5.5463 -0.8713 14 6 4.4855 -5.6269 1.2775 15 6 3.2912 -7.2812 -0.1645 16 7 4.4819 -8.1255 -0.2890 17 6 4.3507 -9.4605 -0.4198 18 8 3.2469 -9.9628 -0.4340 19 6 5.5755 -10.3290 -0.5484 20 16 5.0733 -12.0608 -0.7062 21 6 6.6545 -12.8272 -0.8373 22 1 7.5506 -12.2252 -0.8064 23 6 6.7484 -14.2046 -0.9801 24 7 7.9297 -14.7772 -1.0775 25 14 5.1984 -15.2458 -1.0342 26 1 4.7414 -15.3805 -2.4407 27 1 5.4864 -16.5915 -0.4763 28 1 4.1353 -14.5932 -0.2286 29 1 -0.3633 -0.0057 1.0277 30 1 -0.3633 -0.8871 -0.5188 31 1 -0.3633 0.8929 -0.5089 32 1 2.0220 2.1138 0.0004 33 1 3.8249 -3.2871 -0.0179 34 1 1.8785 -5.1345 0.8626 35 1 1.8781 -5.1248 -0.9173 36 1 4.7879 -4.5840 1.3726 37 1 3.8464 -5.8980 2.1178 38 1 5.3703 -6.2633 1.2744 39 1 2.7261 -7.5777 0.7192 40 1 2.6677 -7.3993 -1.0508 41 1 5.3647 -7.7237 -0.2780 42 1 6.1403 -10.0322 -1.4320 43 1 6.1991 -10.2113 0.3379 44 1 7.9952 -15.7397 -1.1777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721581553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:27 Heat of formation + Delta-G solvation = -44.558272 kcal Electronic energy + Delta-G solvation = -25422.066028 eV Core-core repulsion = 21500.551011 eV Total energy + Delta-G solvation = -3921.515017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.62637 -40.84406 -40.40748 -37.99067 -35.60698 -34.66567 -33.98185 -33.56096 -32.12340 -30.85149 -28.20300 -27.91718 -27.78754 -26.72775 -24.45447 -21.87529 -21.71078 -21.55708 -20.97525 -19.85330 -19.11292 -18.16332 -17.70335 -17.60570 -17.10328 -16.99146 -16.75166 -16.55790 -16.15657 -15.68126 -15.33159 -15.17900 -14.91218 -14.73916 -14.36175 -14.23841 -14.00682 -13.95743 -13.78907 -13.64445 -13.36654 -13.33543 -13.04752 -13.00441 -12.67438 -12.20173 -12.16917 -11.90123 -11.85829 -11.83793 -11.19683 -11.16541 -10.99763 -10.52207 -10.50029 -10.14295 -10.09096 -9.78283 -8.98740 -8.51081 -6.21628 0.50568 0.99893 1.17638 1.31932 1.47490 1.55959 1.58349 1.87021 2.16992 2.25635 2.33051 2.40143 2.73550 2.87390 3.41191 3.68056 3.77408 3.84519 3.92720 3.97858 4.19179 4.25074 4.39494 4.48909 4.50220 4.51789 4.57895 4.74345 4.76473 4.88217 4.91263 4.95315 5.04254 5.13963 5.20737 5.29627 5.38703 5.43299 5.54322 5.71314 6.11981 6.13748 6.43213 6.48275 6.87460 6.94457 7.14655 7.21133 8.61227 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037598 B = 0.001518 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.548928 B =18442.464212 C =19012.520526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.178 4.178 3 C 0.006 3.994 4 N -0.363 5.363 5 H 0.465 0.535 6 N -0.269 5.269 7 C -0.045 4.045 8 C 0.597 3.403 9 O -0.565 6.565 10 N -0.704 5.704 11 C 0.129 3.871 12 C -0.096 4.096 13 H 0.104 0.896 14 C -0.151 4.151 15 C 0.128 3.872 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.564 6.564 19 C -0.111 4.111 20 S -0.179 6.179 21 C -0.529 4.529 22 H 0.063 0.937 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.238 1.238 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.415 0.585 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.417 0.583 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 39.414 3.481 40.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.188 4.188 3 C -0.139 4.139 4 N -0.080 5.080 5 H 0.314 0.686 6 N -0.107 5.107 7 C -0.204 4.204 8 C 0.382 3.618 9 O -0.442 6.442 10 N -0.356 5.356 11 C 0.004 3.996 12 C -0.115 4.115 13 H 0.122 0.878 14 C -0.208 4.208 15 C 0.003 3.997 16 N -0.362 5.362 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.262 4.262 20 S 0.048 5.952 21 C -0.677 4.677 22 H 0.081 0.919 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.161 1.161 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.244 0.756 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.197 37.836 3.449 39.090 hybrid contribution 1.538 0.344 -0.088 1.579 sum -7.659 38.180 3.360 39.085 Atomic orbital electron populations 1.20131 0.88002 1.02995 1.02324 1.20718 0.98254 0.91086 1.08790 1.23292 0.83179 1.01716 1.05743 1.43372 1.09772 1.03661 1.51199 0.68607 1.73427 1.22325 0.95530 1.19385 1.21804 0.90721 0.94748 1.13150 1.17170 0.85133 0.83630 0.75832 1.90773 1.18294 1.83372 1.51774 1.45712 1.10300 1.05562 1.74037 1.21267 0.96513 0.79129 1.02642 1.21421 0.96861 0.92009 1.01214 0.87766 1.21909 1.00437 1.02821 0.95617 1.21282 0.87309 0.88963 1.02105 1.45654 1.11135 1.04942 1.74477 1.19956 0.89472 0.83198 0.75410 1.90701 1.28509 1.74394 1.50662 1.23269 0.99666 0.95812 1.07428 1.84755 1.12509 1.01400 1.96557 1.22469 0.91854 0.95862 1.57467 0.91853 1.25543 0.99214 0.98187 0.92920 1.70014 1.24822 1.11989 1.48633 0.85879 0.80612 0.79554 0.80404 1.18745 1.18344 1.16142 0.91578 0.92660 0.89435 0.75554 0.74719 0.91421 0.91431 0.91065 0.92723 0.91237 0.91876 0.91829 0.74494 0.86719 0.86667 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.93 71.24 0.71 -0.32 16 2 C -0.18 -2.51 6.25 -19.72 -0.12 -2.63 16 3 C 0.01 0.03 11.97 83.53 1.00 1.03 16 4 N -0.36 -2.07 6.83 -57.51 -0.39 -2.46 16 5 H 0.47 -1.15 8.96 -219.99 -1.97 -3.12 16 6 N -0.27 -3.55 11.92 -48.17 -0.57 -4.13 16 7 C -0.04 -0.80 7.13 42.46 0.30 -0.50 16 8 C 0.60 12.72 7.82 86.75 0.68 13.40 16 9 O -0.56 -15.72 15.12 -3.94 -0.06 -15.78 16 10 N -0.70 -11.03 5.28 -466.11 -2.46 -13.49 16 11 C 0.13 2.01 5.06 86.38 0.44 2.45 16 12 C -0.10 -1.18 2.46 -10.80 -0.03 -1.21 16 13 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 14 C -0.15 -1.64 8.94 71.98 0.64 -0.99 16 15 C 0.13 2.46 5.06 86.38 0.44 2.90 16 16 N -0.71 -15.40 5.28 -463.05 -2.45 -17.85 16 17 C 0.53 17.87 7.85 87.66 0.69 18.56 16 18 O -0.56 -24.06 15.86 -3.03 -0.05 -24.11 16 19 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 20 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 21 C -0.53 -30.73 10.04 67.96 0.68 -30.05 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 23 C 0.05 2.75 5.50 84.86 0.47 3.21 16 24 N -0.92 -55.77 13.97 21.65 0.30 -55.47 16 25 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 26 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 27 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 1.06 6.72 -2.39 -0.02 1.04 16 31 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.23 -0.82 8.06 -2.91 -0.02 -0.84 16 33 H 0.42 4.86 7.38 -92.71 -0.68 4.18 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 0.62 7.18 -2.39 -0.02 0.60 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.69 7.18 -2.39 -0.02 0.68 16 39 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.42 6.21 7.66 -92.71 -0.71 5.50 16 42 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 43 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 44 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -85.08 386.57 -0.84 -85.92 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.34 Total: 8.12 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.33 Total: 2.22 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -5.57 Total: -93.40 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.11 Total: -39.89 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -85.08 -0.84 -85.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721581553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.360 kcal (2) G-P(sol) polarization free energy of solvation -85.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds